Isabelle SANCHEZ

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Publications

Kalman filter with impulse noised outliers: a robust sequential algorithm to filter data with a large number of outliers

Bertrand Cloez , Bénédicte Fontez , Eliel González García , Isabelle Sanchez
The international journal of biostatistics, 2024, 20 (2), ⟨10.1515/ijb-2023-0065⟩
Article dans une revue hal-04563781 v1
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The role of farmers' networks in sourcing planting material and information in a context of agroforestry transition in Madagascar

Juliette Mariel , Isabelle Sanchez , Nicolas Verzelen , François Massol , M. Carrière Stéphanie et al.
Agricultural Systems, 2024, 217, pp.103906. ⟨10.1016/j.agsy.2024.103906⟩
Article dans une revue hal-04511174 v1

Unveiling the Power of Sterols: Optimizing Wine Fermentation with Strategic management

Giovana Girardi Piva , Erick Casalta , Jean-Luc Legras , Isabelle Sanchez , Martine Pradal et al.
International Journal of Food Microbiology, 2023, 406, pp.110350. ⟨10.1016/j.ijfoodmicro.2023.110350⟩
Article dans une revue hal-04185866 v1
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Evaluating a Walk-over-Weighing system for the automatic monitoring of growth in postweaned Mérinos d’Arles ewe lambs under Mediterranean grazing conditions

Estelle Leroux , Irene Llach-Martinez , Gaelle Besche , J.-D. Guyonneau , Denis Montier et al.
Animal - Open Space, 2023, 2, pp.100032. ⟨10.1016/j.anopes.2022.100032⟩
Article dans une revue hal-03919239 v1
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Analysis of volatile compounds production kinetics: A study of the impact of nitrogen addition and temperature during alcoholic fermentation

Joséphine Godillot , Clara Baconin , Isabelle Sanchez , Meïli Baragatti , Marc Pérez et al.
Frontiers in Microbiology, 2023, 14, pp.1124970. ⟨10.3389/fmicb.2023.1124970⟩
Article dans une revue hal-04053997 v1
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Genetic bases for the metabolism of the DMS precursor S-methylmethionine by Saccharomyces cerevisiae

Matthias Eder , Isabelle Sanchez , Carole Camarasa , Jean-Marc Daran , Sylvie Dequin et al.
Food Microbiology, 2022, 106, ⟨10.1016/j.fm.2022.104041⟩
Article dans une revue hal-03661692 v1
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The Impact of Must Nutrients and Yeast Strain on the Aromatic Quality of Wines for Cognac Distillation

Charlie Guittin , Faïza Maçna , Isabelle Sanchez , Adeline Barreau , Xavier Poitou et al.
Fermentation, 2022, 8 (2), pp.51. ⟨10.3390/fermentation8020051⟩
Article dans une revue hal-04534345 v1
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The Timing of Nitrogen Addition Impacts Yeast Genes Expression and the Production of Aroma Compounds During Wine Fermentation

Joséphine Godillot , Isabelle Sanchez , Marc Perez , Christian Picou , Virginie Galeote et al.
Frontiers in Microbiology, 2022, 13, ⟨10.3389/fmicb.2022.829786⟩
Article dans une revue hal-03625745 v1

Impact of high lipid contents on the production of fermentative aromas during white wine fermentation

Charlie Guittin , Faïza Maçna , Isabelle Sanchez , Xavier Poitou , Jean-Marie Sablayrolles et al.
Applied Microbiology and Biotechnology, 2021, 105 (16-17), pp.6435-6449. ⟨10.1007/s00253-021-11479-5⟩
Article dans une revue hal-03332021 v1
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Nitrogen sources preferences of non-Saccharomyces yeasts to sustain growth and fermentation under winemaking conditions

Ying Su , Pauline Seguinot , Isabelle Sanchez , Anne Ortiz-Julien , José Maria Heras et al.
Food Microbiology, 2020, 85, pp.103287. ⟨10.1016/j.fm.2019.103287⟩
Article dans une revue hal-02320569 v1
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Specific gene regulations of unusual micronutrient starvations leading to cell death during wine fermentation

Camille Duc , Martine Pradal , Isabelle Sanchez , Jessica Noble , Bruno Blondin et al.
OENO One, 2020, 54 (2), pp.359-371. ⟨10.20870/oeno-one.2020.54.2.2970⟩
Article dans une revue hal-02871928 v1
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QTL mapping of modelled metabolic fluxes reveals gene variants impacting yeast central carbon metabolism

Matthias Eder , Thibault Nidelet , Isabelle Sanchez , Carole Camarasa , Jean-Luc Legras et al.
Scientific Reports, 2020, 10 (1), pp.2162. ⟨10.1038/s41598-020-57857-3⟩
Article dans une revue hal-02516760 v2
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Large-Scale Screening of Thiol and Fermentative Aroma Production during Wine Alcoholic Fermentation: Exploring the Effects of Assimilable Nitrogen and Peptides

Camille Duc , Faïza Maçna , Isabelle Sanchez , Virginie Galeote , Stéphane Delpech et al.
Fermentation, 2020, 6 (4), ⟨10.3390/fermentation6040098⟩
Article dans une revue hal-03102145 v1
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Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System

Pascal Neveu , Anne Tireau , Nadine Hilgert , Vincent Negre , Jonathan Mineau-Cesari et al.
New Phytologist, 2019, 221 (1), pp.588-601. ⟨10.1111/nph.15385⟩
Article dans une revue hal-02627721 v1
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Relief from nitrogen starvation entails quick unexpected down-regulation of glycolytic/lipid metabolism genes in enological Saccharomyces cerevisiae

Catherine Tesniere , Chloé Bessiere , Martine Pradal , Isabelle Sanchez , Bruno Blondin et al.
PLoS ONE, 2019, 14 (4), ⟨10.1371/journal.pone.0215870⟩
Article dans une revue hal-02126102 v1
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To clean or not to clean phenotypic datasets for outlier plants in genetic analyses?

Santiago Alvarez Prado , Isabelle Sanchez , Llorenç Cabrera Bosquet , Antonin Grau , Claude Welcker et al.
Journal of Experimental Botany, 2019, 70 (15), pp.3693-3698. ⟨10.1093/jxb/erz191⟩
Article dans une revue hal-02619451 v1
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QTL mapping of volatile compound production in Saccharomyces cerevisiae during alcoholic fermentation

Matthias Eder , Isabelle Sanchez , Claire Brice , Carole Camarasa , Jean-Luc Legras et al.
BMC Genomics, 2018, 19 (1), 19 p. ⟨10.1186/s12864-018-4562-8⟩
Article dans une revue hal-01837846 v1
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Impact of the timing and the nature of nitrogen additions on the production kinetics of fermentative aromas by Saccharomyces cerevisiae during winemaking fermentation in synthetic media

Pauline Seguinot , Stéphanie Rollero , Isabelle Sanchez , Jean-Marie Sablayrolles , Anne Ortiz-Julien et al.
Food Microbiology, 2018, 76, pp.29-39. ⟨10.1016/j.fm.2018.04.005⟩
Article dans une revue hal-02623197 v1
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Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication

Jean-Luc Legras , Virginie Galeote , Frederic Bigey , Carole Camarasa , Souhir Marsit et al.
Molecular Biology and Evolution, 2018, 35 (7), pp.1712-1727. ⟨10.1093/molbev/msy066⟩
Article dans une revue hal-01837856 v1
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Relief from nitrogen starvation triggers transient destabilization of glycolytic mRNAs in Saccharomyces cerevisiae cells

Catherine Tesniere , Martine Pradal , Chloé Bessiere , Isabelle Sanchez , Bruno Blondin et al.
Molecular Biology of the Cell, 2018, 29 (4), pp.490-498. ⟨10.1091/mbc.E17-01-0061⟩
Article dans une revue hal-01837842 v1

Yeast multi-stress resistance and lag phase characterization during wine fermentation

David Ferreira , Virginie Galeote , Isabelle Sanchez , Jean-Luc Legras , Anne Julien Ortiz et al.
FEMS Yeast Research, 2017, 11 p. ⟨10.1093/femsyr/fox051⟩
Article dans une revue hal-01607566 v1
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Integrating transcriptomics and metabolomics for the analysis of the aroma profiles of Saccharomyces cerevisiae strains from diverse origins

Inès Mendes , Isabelle Sanchez , Ricardo Franco-Duarte , Carole Camarasa , Dorit Schuller et al.
BMC Genomics, 2017, 18, 13 p. ⟨10.1186/s12864-017-3816-1⟩
Article dans une revue hal-01605957 v1
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A set of nutrient limitations trigger yeast cell death in a nitrogen-dependent manner during wine alcoholic fermentation

Camille Duc , Martine Pradal , Isabelle Sanchez , Jessica Noble , Catherine Tesniere et al.
PLoS ONE, 2017, 12 (9), 22 p. ⟨10.1371/journal.pone.0184838⟩
Article dans une revue hal-01608237 v1

Management of multiple nitrogen sources during wine fermentation by Saccharomyces cerevisiae

Lucie Crepin , Nhat My Truong , Audrey Bloem , Isabelle Sanchez , Sylvie Dequin et al.
Applied and Environmental Microbiology, 2017, 85 (4), pp.21. ⟨10.1128/aem.02617-16⟩
Article dans une revue hal-01606184 v1
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Quantitative 13 C-isotope labelling-based analysis to elucidate the influence of environmental parameters on the production of fermentative aromas during wine fermentation

Stéphanie Rollero , Jean-Roch Mouret , Audrey Bloem , Isabelle Sanchez , Anne Ortiz-Julien et al.
Microbial Biotechnology, 2017, 14 p. ⟨10.1111/1751-7915.12749⟩
Article dans une revue hal-01606296 v1
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Metabolic impact of redox cofactor perturbations on the formation of aroma compounds in Saccharomyces cerevisiae.

Audrey Bloem , Isabelle Sanchez , Sylvie Dequin , Carole Camarasa
Applied and Environmental Microbiology, 2016, 82 (1), pp.174-183. ⟨10.1128/AEM.02429-15⟩
Article dans une revue hal-01837759 v1

Horizontally acquired oligopeptide transporters favor adaptation of Saccharomyces cerevisiae wine yeast to enological environment

Souhir Marsit , Isabelle Sanchez , Virginie Galeote , Sylvie Dequin
Environmental Microbiology, 2016, 18, pp.1148-1161. ⟨10.1111/1462-2920.13117⟩
Article dans une revue istex hal-01837763 v1
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Key role of lipid management in nitrogen and aroma metabolism in an evolved wine yeast strain

Stéphanie Rollero , Jean-Roch Mouret , Isabelle Sanchez , Carole Camarasa , Anne Ortiz-Julien et al.
Microbial Cell Factories, 2016, 15, 15 p. ⟨10.1186/s12934-016-0434-6⟩
Article dans une revue hal-01284656 v1

Combined effects of nutrients and temperature on the production of fermentative aromas by Saccharomyces cerevisiae during wine fermentation.

Stéphanie Rollero , Audrey Bloem , Carole Camarasa , Isabelle Sanchez , Anne Ortiz-Julien et al.
Applied Microbiology and Biotechnology, 2015, 99 (5), pp.2291-2304. ⟨10.1007/s00253-014-6210-9⟩
Article dans une revue hal-01837726 v1

Comment la nutrition azotée influe-t-elle sur la production d'arômes?

Lucie Crépin , Nhat-My Truong , Stéphanie Rollero , Audrey Bloem , Isabelle Sanchez et al.
Revue Française d'Oenologie, 2015, 271, pp.8-10
Article dans une revue hal-01604946 v1
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Identification of new Saccharomyces cerevisiae variants of the MET2 and SKP2 genes controlling the sulfur assimilation pathway and the production of undesirable sulfur compounds during alcoholic fermentation

Jessica Noble , Isabelle Sanchez , Bruno Blondin
Microbial Cell Factories, 2015, 14, 16 p. ⟨10.1186/s12934-015-0245-1⟩
Article dans une revue hal-01161657 v1

Une étude du besoin en azote des levures œnologiques révèle le rôle clé de la signalisation azote dans le contrôle de la vitesse de fermentation

Claire Brice , Isabelle Sanchez , Catherine Tesniere , Frederic Bigey , Jean-Luc Legras et al.
La revue des œnologues et des techniques vitivinicoles et œnologiques, 2015, 154, pp.21-24
Article dans une revue hal-01506449 v1
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Efficient ammonium uptake and mobilization of vacuolar arginine by Saccharomyces cerevisiae wine strains during wine fermentation

Lucie Crepin , Isabelle Sanchez , Thibault Nidelet , Sylvie Dequin , Carole Camarasa
Microbial Cell Factories, 2014, 13 (109), 24 p. ⟨10.1186/s12934-014-0109-0⟩
Article dans une revue hal-01268687 v1
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Deciphering regulatory variation of THI genes in alcoholic fermentation indicate an impact of Thi3p on PDC1 expression

Christian Brion , Chloé C. Ambroset , Pierre Delobel , Isabelle Sanchez , Bruno Blondin
BMC Genomics, 2014, 15, ⟨10.1186/1471-2164-15-1085⟩
Article dans une revue hal-01837734 v1
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A genetic approach of wine yeast fermentation capacity in nitrogen-starvation reveals the key role of nitrogen signaling.

Claire Brice , Isabelle Sanchez , Frederic Bigey , Jean-Luc Legras , Bruno Blondin
BMC Genomics, 2014, 15 (1), pp.495. ⟨10.1186/1471-2164-15-495⟩
Article dans une revue hal-01189979 v1

Assessing the mechanisms responsible for differences between nitrogen requirements of Saccharomyces cerevisiae wine yeasts in alcoholic fermentation

Claire Brice , Isabelle Sanchez , Catherine Tesniere , Bruno Blondin
Applied and Environmental Microbiology, 2014, 80 (4), pp.1330-1339. ⟨10.1128/AEM.03856-13⟩
Article dans une revue hal-02639540 v1

Stuck fermentation: Development of a synthetic stuck wine and study of a restart procedure

Pierre Maisonnave , Isabelle Sanchez , Virginie Moine , Sylvie Dequin , Virginie Galeote
International Journal of Food Microbiology, 2013, 163 (2-3), pp.239 - 247. ⟨10.1016/j.ijfoodmicro.2013.03.004⟩
Article dans une revue hal-01506241 v1

Metabolic Responses of Saccharomyces cerevisiae to Valine and Ammonium Pulses during Four-Stage Continuous Wine Fermentations

Tiphaine Clement , Marc M. Perez , Jean-Roch Mouret , Isabelle Sanchez , Jean-Marie J.-M. Sablayrolles et al.
Applied and Environmental Microbiology, 2013, 79 (8), pp.2749 - 2758. ⟨10.1128/AEM.02853-12⟩
Article dans une revue hal-02647528 v1
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Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks

Christian C. Brion , Chloé C. Ambroset , Isabelle Sanchez , Jean-Luc Legras , Bruno B. Blondin
BMC Genomics, 2013, 14, pp.1-21. ⟨10.1186/1471-2164-14-681⟩
Article dans une revue hal-00939593 v1
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A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation

Magalie Celton , Isabelle Sanchez , Anne Goelzer , Vincent Fromion , Carole Camarasa et al.
BMC Genomics, 2012, 13 (1), pp.317. ⟨10.1186/1471-2164-13-317⟩
Article dans une revue hal-02649995 v1
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QTL mapping of the production of wine aroma compounds by yeast.

Damien Steyer , Chloé C. Ambroset , Christian Brion , Patricia Claudel , Pierre Delobel et al.
BMC Genomics, 2012, 13, pp.573. ⟨10.1186/1471-2164-13-573⟩
Article dans une revue hal-01485468 v1

Sequential Use of Nitrogen Compounds by Saccharomyces cerevisiae during Wine Fermentation: a Model Based on Kinetic and Regulation Characteristics of Nitrogen Permeases

Lucie Crepin , Thibault Nidelet , Isabelle Sanchez , Sylvie Dequin , Carole Camarasa
Applied and Environmental Microbiology, 2012, 78 (22), pp.8102 - 8111. ⟨10.1128/AEM.02294-12⟩
Article dans une revue hal-01506263 v1
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Phenotypic landscape of Saccharomyces cerevisiae during wine fermentation: evidence for origin-dependent metabolic traits

Carole Camarasa , Isabelle Sanchez , Pascale Brial , Frederic Bigey , Sylvie S. Dequin
PLoS ONE, 2011, 6 (9), pp.e25147. ⟨10.1371/journal.pone.0025147⟩
Article dans une revue hal-02645675 v1
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Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach

Chloé C. Ambroset , Maud Petit , Christian Brion , Isabelle Sanchez , Pierre Delobel et al.
G3, 2011, 1, pp.263-281. ⟨10.1534/G3.111.000422⟩
Article dans une revue hal-01487358 v1
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SK8: an institutional management and hosting service for R Shiny applications

Élise Maigné , Isabelle Sanchez , David Carayon , Joseph Tran , Jean-François Rey
JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. 2024
Poster de conférence hal-04935716 v1
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ORIOLE: a web application for cleaning data from the walk-over-weighing device in livestock systems

Isabelle Sanchez , Eliel González García , Bénédicte Fontez , Bertrand Cloez
74th Annual Meeting of the European Federation of Animal Science, Aug 2023, Lyon, France. Wageningen Academic Publishers, 29, pp.504, Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science. ⟨10.3920/978-90-8686-936-7⟩
Poster de conférence hal-04195753 v1
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SK8 : Un service institutionnel de gestion et d'hébergement d'applications Shiny

Élise Maigné , Isabelle Sanchez , David Carayon , Joseph Tran , Jean-François Rey et al.
Rencontres R 2023 et 2024, Jun 2023, Avignon (FR), France.
Poster de conférence hal-04141247 v2

Influence of phytosterols and ergosterol on wine alcoholic fermentation for Saccharomyces cerevisiae strains

Virginie Galeote , Giovana Girardi-Piva , Erick Casalta , Jean-Luc Legras , Thibault Nidelet et al.
36th International Specialised Symposium on Yeasts, Jul 2022, Vancouver, Canada.
Poster de conférence hal-04177018 v1
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Nitrogen source utilisation by non-Saccharomyces yeasts in winemaking conditions

Ying Su , Pauline Seguinot , Isabelle Sanchez , Anne Ortiz Julien , José María Heras et al.
7. Conference on Yeasts and Filamentous Fungi, Jun 2019, Milan, Italy.
Poster de conférence hal-02961837 v1
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PHIS, a plant science ontology-driven Phenotyping Hybrid Information System

Pascal Neveu , Anne Tireau , Nadine Hilgert , Vincent Negre , Jonathan Mineau-Cesari et al.
NETTAB 2018: Building a FAIR Bioinformatics environment, Oct 2018, Genova, Italy. , 1 p., 2018
Poster de conférence hal-02788853 v1
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Impact of nitrogen sources on the fermentative kinetic and aroma compounds production by non-Saccharomyces yeasts in alcoholic fermentation

Pauline Seguinot , Ying Su , Isabelle Sanchez , Audrey Bloem , Pascale Brial et al.
International Conference in Wine Sciences Macrowine 2018, May 2018, Saragosse, Spain
Poster de conférence hal-02958317 v1

Impact of nitrogen sources on the fermentative kinetic of non - Saccharomyces yeasts

Pauline Seguinot , Isabelle Sanchez , Audrey Bloem , Anne Ortiz-Julien , Carole Camarasa
issy 33, Jun 2017, Cork, United Kingdom. , 2017
Poster de conférence hal-01604146 v1

Deciphering the Genetic and Metabolic Bases of Yeast Aroma Properties

Matthias Eder , Isabelle Sanchez , Peggy Rigou , Thibault Nidelet , Carole Camarasa et al.
ISSY 33, Jun 2017, Cork, Ireland. 2017
Poster de conférence hal-01603289 v1
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Impact of nitrogen sources on the fermentative kinetic of non -Saccharomyces yeasts

Pauline Seguinot , Isabelle Sanchez , Audrey Bloem , Anne Julien Ortiz , Carole Camarasa
33rd International Specialized Symposium on Yeast (ISSY33) - Exploring and Engineering Yeasts for Industrial Application, Jun 2017, Cork, Ireland
Poster de conférence hal-02958350 v1

Comment la nutrition azotée influe-t-elle sur la production d’arômes ?

Lucie Crépin , Nhat-My Truong , Stéphanie Rollero , Audrey Bloem , Isabelle Sanchez et al.
7. Journées scientifiques de la vigne et du vin, Apr 2015, Montpellier, France. 2015
Poster de conférence hal-01606654 v1

Comprehensive and quantitative analyses of nitrogen and aroma metabolism during wine fermentation

Carole Camarasa , Lucie Crepin , Nhat My Truong , Isabelle Sanchez , Sylvie Dequin
Macrowine 2014, 2014, Stellenbosch, South Africa. 2014
Poster de conférence hal-01601704 v1
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Quantitative genetic analysis of the metabolism of key fermentation aroma by wine yeast

Damien Steyer , Jean-Luc Legras , Claude Erny , Patricia Claudel , Chloé Ambroset et al.
27. International specialised Symposium on Yeasts Issy, Aug 2009, Paris, France. 2009
Poster de conférence hal-02821197 v1
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statgenHTP: High Throughput Phenotyping (HTP) Data Analysis

Emilie J. Millet , Maria Xose Rodriguez-Alvarez , Diana Marcela Perez Valencia , Isabelle Sanchez , Nadine Hilgert et al.
Logiciel hal-04977360 v1
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kfino: Kalman Filter for Impulse Noised Outliers

Isabelle Sanchez , Bertrand Cloez , Bénédicte Fontez
Logiciel hal-04830668 v1
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blockmodels4inventories: a Collection of R Functions to Analyze Inventories Data

Isabelle Sanchez , Nicolas Verzelen , Mathieu Thomas
Logiciel hal-04835927 v1
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ORIOLE: A web application for the automatic filtering of outliers in databases produced by the Walk-over-Weighing (WoW) platform - TechCare project - v1.1.0

Isabelle Sanchez , Bertrand Cloez
Logiciel hal-04835991 v1
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SpiceFP: Sparse Method to Identify Joint Effects of Functional Predictors

Isabelle Sanchez , Girault Gnanguenon Guesse , Bénédicte Fontez , Nadine Hilgert , Thierry Simonneau
Logiciel hal-04831212 v1