jacques Lagnel

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Publications

Article dans une revue (52)

Classification des symptômes causés par le watermelon mosaic virus (WMV) sur melon par Deep Learning : conception d’un modèle léger et déploiement mobile Naïma Dambrine,Matthieu Deloget,Jacques Lagnel,Lucie Tamisier NOV'AE - Numéros spéciaux, 2026, régulier 05 NOV'AE, ⟨10.20870/Revue-NOVAE.2026.9852⟩ Article dans une revue hal-05552071v1
Self-(in)compatibility analysis of a worldwide core collection of apricot species H. Bourguiba,A. Boubakri,Naïma Dlalah,Laure Heurtevin,Jacques Lagnelet al. Acta Horticulturae, 2026, 1450, pp.365-370. ⟨10.17660/ActaHortic.2026.1450.48⟩ Article dans une revue hal-05599891v1
Nuclear and organelle genome assemblies of 5 Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais, and Zhimali, belonging to diverse botanical groups Javier Belinchon-Moreno,Aurelie Berard,Aurelie Canaguier,Isabelle Le-Clainche,Vincent Rittener-Ruffet al. G3, 2025, 15 (7), ⟨10.1093/g3journal/jkaf098⟩ Article dans une revue hal-05193547v1
Nanopore adaptive sampling to identify the NLR gene family in melon (Cucumis melo L.) Javier Belinchon-Moreno,Aurélie Berard,Aurélie Canaguier,Véronique Chovelon,Corinne Cruaudet al. BMC Genomics, 2025, 26, ⟨10.1186/s12864-025-11295-5⟩ Article dans une revue hal-04957046v1
Microbial diversity in four Mediterranean irciniid sponges Katerina Skaraki,Christina Pavloudi,Thanos Dailianis,Jacques Lagnel,Adriani Pantazidouet al. Biodiversity Data Journal, 2024, 12, pp.e114809. ⟨10.3897/bdj.12.e114809⟩ Article dans une revue (data paper) hal-04575995v1
Crop domestication as a step towards reproductive isolation M. I. Tenaillon,Ewen Burban,Stella Huynh,Arthur Wojcik,Anne-Céline Thuilletet al. American Journal of Botany, 2023, 110 (7), pp.e16173. ⟨10.1002/ajb2.16173⟩ Article dans une revue hal-04088575v1
Phytophthora capsici genome assembly for two isolates using long-read Oxford Nanopore Technology sequencing Emmanuel Szadkowski,Jacques Lagnel,Nasradin Touhami,Amalia Sayeh,Céline Lopez-Roqueset al. Microbiology Resource Announcements, 2023, 12 (12), ⟨10.1128/mra.00196-23⟩ Article dans une revue hal-04521837v1
The Rm1 and Rm2 Resistance Genes to Green Peach Aphid (Myzus persicae) Encode the Same TNL Proteins in Peach (Prunus persica L.) Henri Duval,Laure Heurtevin,Naïma Dlalah,Caroline Callot,Jacques Lagnel Genes, 2022, 13 (8), ⟨10.3390/genes13081489⟩ Article dans une revue hal-03837796v1
SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments Nelina Angelova,Theodoros Danis,Jacques Lagnel,Costas S Tsigenopoulos,Tereza Manousaki BMC Research Notes, 2022, 15 (1), pp.98. ⟨10.1186/s13104-022-05978-5⟩ Article dans une revue hal-03842053v1
Building a cluster of NLR genes conferring resistance to pests and pathogens: the story of the Vat gene cluster in cucurbits Véronique Chovelon,Rafael Feriche-Linares,Guillaume Barreau,Joël Chadoeuf,Caroline Callotet al. Horticulture research, 2021, 8 (1), ⟨10.1038/s41438-021-00507-0⟩ Article dans une revue hal-03216497v1
0s and 1s in marine molecular research: a regional HPC perspective Jacques Lagnel,Haris Zafeiropoulos,Anastasia Gioti,Stelios Ninidakis,Antonis Potirakiset al. GigaScience, 2021, 10 (8), pp.1-12. ⟨10.1093/gigascience/giab053⟩ Article dans une revue (article de synthèse) hal-03659669v1
Gearing Up for Warmer Times: Transcriptomic Response of Spongia officinalis to Elevated Temperatures Reveals Recruited Mechanisms and Potential for Resilience Vasiliki Koutsouveli,Tereza Manousaki,Ana Riesgo,Jacques Lagnel,Spyros Kolliaset al. Frontiers in Marine Science, 2020, 6, ⟨10.3389/fmars.2019.00786⟩ Article dans une revue hal-03167192v1
The Gene Toolkit Implicated in Functional Sex in Sparidae Hermaphrodites: Inferences From Comparative Transcriptomics Alexandros Tsakogiannis,Tereza Manousaki,Jacques Lagnel,Nikolaos Papanikolaou,Nikos Papandroulakiset al. Frontiers in Genetics, 2019, 9, ⟨10.3389/fgene.2018.00749⟩ Article dans une revue hal-02620563v1
Unravelling paralogous gene expression dynamics during three-spined stickleback embryogenesis Elisavet Kaitetzidou,Ioanna Katsiadaki,Jacques Lagnel,Efthimia Antonopoulou,Elena Sarropoulou Scientific Reports, 2019, 9, ⟨10.1038/s41598-019-40127-2⟩ Article dans une revue hal-02627533v1
The transcriptomic signature of different sexes in two protogynous hermaphrodites: Insights into the molecular network underlying sex phenotype in fish A. Tsakogiannis,T. Manousaki,Jacques Lagnel,A. Sterioti,M. Pavlidiset al. Scientific Reports, 2018, 8 (1), pp.1-17. ⟨10.1038/s41598-018-21992-9⟩ Article dans une revue hal-02620154v1
Muscle and liver transcriptome characterization and genetic marker discovery in the farmed meagre, Argyrosomus regius T. Manousaki,A. Tsakogiannis,Jacques Lagnel,D. Kyriakis,N. Duncanet al. Marine Genomics, 2018, 39, pp.39-44. ⟨10.1016/j.margen.2018.01.002⟩ Article dans une revue hal-02621545v1
The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird Mathieu Gautier,Junichi Yamaguchi,Julien Foucaud,Anne Loiseau,Aurélien Aussetet al. Current Biology, 2018, 28 (20), pp.1-7. ⟨10.1016/j.cub.2018.08.023⟩ Article dans une revue hal-01864435v1
Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis Tereza Manousaki,Alexandros Tsakogiannis,John B. Taggart,Christos Palaiokostas,Dimitris Tsapariset al. G3, 2016, 6 (3), pp.509-519. ⟨10.1534/g3.115.023432⟩ Article dans une revue hal-02632190v1
Transcriptome Profiling and Genetic Study Reveal Amplified Carboxylesterase Genes Implicated in Temephos Resistance, in the Asian Tiger Mosquito Aedes albopictus Linda Grigoraki,Jacques Lagnel,Ilias Kioulos,Anastasia Kampouraki,Evangelia Morouet al. PLoS Neglected Tropical Diseases, 2015, 9 (5), pp.e0003771. ⟨10.1371/journal.pntd.0003771⟩ Article dans une revue hal-01938133v1
Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype Aris Ilias,Jacques Lagnel,Despoina E. Kapantaidaki,Emmanouil Roditakis,Costas S. Tsigenopouloset al. BMC Genomics, 2015, 16, ⟨10.1186/s12864-015-2161-5⟩ Article dans une revue hal-02641522v1
Second generation genetic linkage map for the gilthead sea bream Sparus aurata L. Costas S. Tsigenopoulos,Bruno Louro,Dimitrios Chatziplis,Jacques Lagnel,Emmanouella Vogiatziet al. Marine Genomics, 2014, 18, pp.77 - 82. ⟨10.1016/j.margen.2014.09.008⟩ Article dans une revue istex hal-02630750v1
Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms Grigorios Chrysos,Euripides Sotiriades,Christos Rousopoulos,Kostas Pramataris,Ioannis Papaefstathiouet al. IEEE Design & Test, 2014, 31 (1), pp.62 - 73. ⟨10.1109/MDAT.2013.2284191⟩ Article dans une revue hal-02637115v1
The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo) Tereza Manousaki,Alexandros Tsakogiannis,Jacques Lagnel,Elena Sarropoulou,Jenny Z. Xianget al. BMC Genomics, 2014, 15, ⟨10.1186/1471-2164-15-655⟩ Article dans une revue hal-02637653v1
In silico mining and characterization of simple sequence repeats from gilthead sea bream (Sparus aurata) expressed sequence tags (EST-SSRs); PCR amplification, polymorphism evaluation and multiplexing and cross-species assays Emmanouella Vogiatzi,Jacques Lagnel,Victoria Pakaki,Bruno Louro,Adelino V. M. Canarioet al. Marine Genomics, 2011, 4 (2), pp.83 - 91. ⟨10.1016/j.margen.2011.01.003⟩ Article dans une revue istex hal-02650290v1
Gilthead sea bream (Sparus auratus) and European sea bass (Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers Bruno Louro,Ana Lucia S. Passos,Erika L. Souche,Costas Tsigenopoulos,Alfred Becket al. Marine Genomics, 2010, 3 (3-4), pp.179 - 191. ⟨10.1016/j.margen.2010.09.005⟩ Article dans une revue istex hal-02666990v1
NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results Jacques Lagnel,Costas S. Tsigenopoulos,Ioannis Iliopoulos Bioinformatics, 2009, 25 (6), pp.824-826. ⟨10.1093/bioinformatics/btp067⟩ Article dans une revue hal-02659946v1
A combined AFLP and microsatellite linkage map and pilot comparative genomic analysis of European sea bassDicentrarchus labraxL. D. A. Chistiakov,C. S. Tsigenopoulos,Jacques Lagnel,Y.-M. Guo,B. Hellemanset al. Animal Genetics, 2008, 39 (6), pp.623-634. ⟨10.1111/j.1365-2052.2008.01786.x⟩ Article dans une revue hal-02657212v1
Characterization of nine polymorphic microsatellite markers in sprat (Sprattus sprattusL.) T. Dailianis,M. Limborg,R. Hanel,D. Bekkevold,Jacques Lagnelet al. Molecular Ecology Resources, 2008, 8 (4), pp.861-863. ⟨10.1111/j.1755-0998.2008.02091.x⟩ Article dans une revue istex hal-02664905v1
Biotype status and genetic polymorphism of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in Greece: mitochondrial DNA and microsatellites. A Tsagkarakou,C S Tsigenopoulos,K Gorman,Jacques Lagnel,I D Bedford Bulletin of Entomological Research, 2007, 97 (1), pp.29-40. ⟨10.1017/S000748530700466X⟩ Article dans une revue hal-02667439v1
FDC-specific functions of p55TNFR and IKK2 in the development of FDC networks and of antibody responses. Panayiotis Victoratos,Jacques Lagnel,Sotiria Tzima,Marat B Alimzhanov,Klaus Rajewskyet al. Immunity, 2006, 24 (1), pp.65-77. ⟨10.1016/j.immuni.2005.11.013⟩ Article dans une revue hal-02664288v1
Extrachromosomal DNA of the symbiont Sodalis glossinidius. a C Darby,Jacques Lagnel,C Z Matthew,K Bourtzis,I Maudlinet al. Journal of Bacteriology, 2005, 187 (14), pp.5003-5007. ⟨10.1128/JB.187.14.5003-5007.2005⟩ Article dans une revue hal-02678823v1
Transposable element polymorphism of Wolbachia in the mosquito Culex pipiens: evidence of genetic diversity, super-infection and recombination Olivier Duron,Jacques Lagnel,Michel Raymond,Kostas Bourtzis,Philippe Fortet al. Molecular Ecology, 2005, 14 (5), pp.1561-1573. ⟨10.1111/j.1365-294X.2005.02495.x⟩ Article dans une revue istex halsde-00193163v1
Inducible transgenic mice reveal resting dendritic cells as potent inducers of CD8+ T cell tolerance. Hans Christian Probst,Jacques Lagnel,George Kollias,Maries van den Broek Immunity, 2003, 18 (5), pp.713-20. ⟨10.1016/S1074-7613(03)00120-1⟩ Article dans une revue hal-02683091v1
Genetic structure of a greenhouse population of the spider mite Tetranychus urticae: spatio-temporal analysis with microsatellite markers. Maria Navajas,Marie-Jeanne Cezilly,Jacques Lagnel,Alain Migeon,T Bourseet al. Insect Molecular Biology, 2002, 11 (2), pp.157-65 Article dans une revue hal-02679319v1
Field releases of the predatory mite Neoseiulus fallacis (Acari : Phytoseiidae) in Canada, monitored by pyrethroid resistance and allozyme markers Maria Navajas,H. Thistlewood,Jacques Lagnel,D. Marshall,Anastasia Tsagkarakouet al. Biological Control, 2001, 20 (3), pp.191-198. ⟨10.1006/bcon.2000.0896⟩ Article dans une revue istex halsde-00201056v1
Isolation and characterization by direct amplification of length polymorphisms (DALP) of codominant genetic markers with Mendelian inheritance in Neoseiulus californicus (Acari: Phytoseiidae). Marie-Jeanne Perrot-Minnot,Jacques Lagnel,E Desmarais,Maria Navajas Experimental and Applied Acarology, 2000, 24 (10-11), pp.795-803. ⟨10.1023/A:1006457310697⟩ Article dans une revue istex hal-02696448v1
Comparison of ribosomal ITS regions among Androctonus spp. sorpions (Scorpionida: Buthidae) from Tunisia. Z Ben Ali,P Boursot,K Said,Jacques Lagnel,N Chattiet al. Journal of Medical Entomology, 2000, 37 (6), pp.787-790. ⟨10.1603/0022-2585-37.6.787⟩ Article dans une revue hal-02698084v1
Genetic differentiation in Tetranychus urticae (Acari: Tetranychidae): polymorphism, host races or sibling species? Maria Navajas,A Tsagkarakov,Jacques Lagnel,M J Perrot-Minnot,Marie-Jeanne Perrot-Minnot Experimental and Applied Acarology, 2000, 24 (5-6), pp.365-376. ⟨10.1023/A:1006432604611⟩ Article dans une revue istex hal-02699110v1
Tracking paternal genes with DALP markers in a pseudoarrhenotokous reproductive system: biparental transmission but haplodiploid-like inheritance in the mite Neoseiulus californicus. Marie-Jeanne Perrot-Minnot,Jacques Lagnel,Alain Migeon,Maria Navajas Heredity, 2000, 84 ( Pt 6) (6), pp.702-709. ⟨10.1046/j.1365-2540.2000.00708.x⟩ Article dans une revue hal-02694021v1
Sequence variation of ribosomal internal transcribed spacers (ITS) in commercially important Phytoseiidae mites Maria M. Navajas Navarro,Jacques Lagnel,G. Fauvel,G. de Moraes Experimental and Applied Acarology, 1999, 23, pp.851-859. ⟨10.1023/A:1006251220052⟩ Article dans une revue istex hal-02695950v1
Mechanisms of insecticide resistance in the aphid Nasonovia ribisnigri (Mosley) (Homoptera : Aphididae) from France Catherine Rufingier,Nicole Pasteur,Jacques Lagnel,C. Martin,Maria Navajas Insect Biochemistry and Molecular Biology, 1999, 29 (4), pp.385-391. ⟨10.1016/S0965-1748(99)00014-4⟩ Article dans une revue istex halsde-00201906v1
Direct amplification of length polymorphisms (DALP), or how to get and characterize new genetic markers in many species. Eric Desmarais,I. Lanneluc,Jacques Lagnel Nucleic Acids Research, 1998, 26 (6), pp.1458-1465 Article dans une revue hal-02694020v1
Species-wide homogeneity of nuclear ribosomal ITS2 sequences in the spider mite Tetranychus urticae contrasts with extensive mitochondrial COI polymorphism. Maria Navajas,Jacques Lagnel,Juliana Guttierez,P Boursot Heredity, 1998, 80 (6), pp.742-52. ⟨10.1046/j.1365-2540.1998.00349.x⟩ Article dans une revue hal-02699169v1
Microsatellite sequences are under-represented in two mite genomes. Maria Navajas,H. M. Thistlewood,Jacques Lagnel,C Hughes Insect Molecular Biology, 1998, 7 (3), pp.249-56. ⟨10.1111/j.1365-2583.1998.00066.x⟩ Article dans une revue istex hal-02697825v1
Population structure in the spider mite Tetranychus urticae (Acari: Tetranychidae) from Crete based on multiple allozymes Anastasia Tsagkarakou,Maria Navajas,Jacques Lagnel,Nicole Pasteur Heredity, 1997, 78, pp.84-92. ⟨10.1038/hdy.1997.10⟩ Article dans une revue halsde-00201298v1
Genetic variability in Tetranychus urticae ( Acari : Tetranychidae ) from Greece : insecticide resistance and isozymes. Anastasia Tsagkarakou,Maria M. Navajas Navarro,Jacques Lagnel,J. Gutíerrez,N. Pasteur Journal of Economic Entomology, 1996, 89, 5 p Article dans une revue hal-02688550v1
Population structure in the spider mite Tetranychus urticae (Acari: Tetranychidae) from Crete based on multiple allozymes Anastasia Tsagkarakou,Maria M. Navajas Navarro,Jacques Lagnel,N. Pasteur Heredity, 1996, 78 (1), pp.84-92. ⟨10.1038/hdy.1997.10⟩ Article dans une revue hal-02696589v1
Mitochondrial COI sequences in mites : evidence for variations in base composition. Maria M. Navajas Navarro,Dominique Fournier,Jacques Lagnel,J. Gutíerrez,P. Boursot Insect Molecular Biology, 1996, 5 (4), pp.281-285. ⟨10.1111/j.1365-2583.1996.tb00102.x⟩ Article dans une revue istex hal-02699203v1
Mitochondrial cytochrome oxidase I in tetranychid mites : a comparison between molecular phylogeny and changes of morphological and life history traits. Maria M. Navajas Navarro,J. Gutíerrez,Jacques Lagnel,Pierre Boursot Bulletin of Entomological Research, 1996, 86, pp.407-417 Article dans une revue hal-02693555v1
Genetic variability in Tetranychus urticae (Acari: Tetranychidae) from Greece: Insecticide resistance and isozymes Anastasia Tsagkarakou,Maria Navajas,Jacques Lagnel,Jean Gutierrez,Nicole Pasteur Journal of Economic Entomology, 1996, 89 (6), pp.1354-1358. ⟨10.1093/jee/89.6.1354⟩ Article dans une revue halsde-00201336v1
A glycoprotein highly toxic for Galleria mellonella larvae secreted by the entomopathogenic fungus Beauveria sulfurescens Pascale Mollier,Jacques Lagnel,B. Fournet,Agnes Aioun,Guy Riba Journal of Invertebrate Pathology, 1994, 64 (3), pp.200-207. ⟨10.1016/S0022-2011(94)90175-9⟩ Article dans une revue istex hal-02715841v1
Cytotoxic activity in culture filtrates from the entomopathogenic fungus Beauveria sulfurescens Pascale Mollier,Jacques Lagnel,J.M. Quiot,Agnes Aioun,Guy Riba Journal of Invertebrate Pathology, 1994, 64, pp.208-213 Article dans une revue hal-02714982v1

Communication dans un congrès (9)

Assessing the diversity of the Espelette pepper landrace in the French Basque country Kritika Adhikari,Sonia Elbelt,Anne Massire,Paul Dumeaux,Damien Hinsingeret al. Colloque INRAE Genomics 2025, Jun 2025, Clermont - Ferrand, France. 1 p Communication dans un congrès hal-05600409v1
Change of paradigm for breeding disease resistant cultivars robust to varying environments: estimators of the robustness of plant immunity and promising genes for the future William Billaud,Thibaud Jayet,Valentin Ribaut,Lucie Tamisier,Anne Massireet al. European Scientific Conference – Towards Pesticide Free Agriculture “What research to meet the pesticides reduction objectives embedded in the European Green Deal?”, French Research Institute for Agriculture, Food and Environment (INRAE), Jun 2022, Dijon, France Communication dans un congrès hal-03737211v1
Robustesse de l'immunité du piment à Phytophthora capsici face à une perturbation thermique William Billaud,Thibaud Jayet,Valentin Ribaut,Lucie Tamisier,Anne Massireet al. 13. Rencontres de Phytopathologie - Mycologie, Sep 2022, Aussois (France), France. 1p Communication dans un congrès hal-04133317v1
Bioinformatique et reproductibilité au sein de l’unité Génétique et Amélioration des Fruits et Légumes (GAFL): mise en place et retour d'expérience. Jacques Lagnel Journées du PEPI IBIS 2019, Jun 2019, Paris, France Communication dans un congrès hal-02613718v1
Apport de la technologie Oxford NanoPore pour l’assemblage de novo du génome d’espèces non-modèles : le cas de la coccinelle asiatique Harmonia axyridis Jacques Lagnel,Arnaud A Estoup,Cecile Donnadieu,Celine Lopez-Roques,Maxime Mannoet al. Montpellier Omics days 2018, Université de Montpellier (UM). Montpellier, FRA., Feb 2018, Montpellier, France Communication dans un congrès hal-02737315v1
Contribution of Oxford NanoPore technology for the de novo genome assembly of nonmodel species: the case of the Asian ladybird Harmonia axyridis Jacques Lagnel,Arnaud A Estoup,Cecile Donnadieu,Celine Lopez-Roques,Maxime Mannoet al. Réunion France Génomique, Nov 2018, Evry, France Communication dans un congrès hal-02785309v1
Apport de la technologie Oxford NanoPore pour l’assemblage de novo du génome d’espèces non-modèles : le cas de la coccinelle asiatique Harmonia axyridis Jacques Lagnel,Arnaud A Estoup,Cecile Donnadieu,Celine Lopez-Roques,Maxime Mannoet al. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM 2018), Société Française de Bio-Informatique (SFBI). FRA. GdR 3003 Bioinformatique Moléculaire (GdR BiM), FRA. Institut Français de Bioinformatique (IFB), FRA. Aix Marseille Université (AMU), FRA. Institut National de la Santé et de la Recherche Médicale (INSERM), FRA. Centre National de la Recherche Scientifique (CNRS), FRA., Jul 2018, Marseille, France Communication dans un congrès hal-02733723v1
Differential gene expression analysis in the threatened sponge Spongia officinalis following exposure to different temperature conditions. V Koutsouveli,Tereza Manousaki,Jacques Lagnel,S Kollias,Costas Tsigenopouloset al. 10. World Sponge Conference, National University of Ireland Galway. IRL., Jun 2017, Galway, Ireland Communication dans un congrès hal-02733624v1
Evaluating the performance of available tools for building de novo transcriptome hybrid assemblies by combining reads of different length Jacques Lagnel,Tereza Manousaki,Costas Tsigenopoulos,Anastasia Tsagkarakou 9. Hellenic Bioinformatics 2016, Hellenic Bioinformatics (H.bioinfo). GRC., Nov 2016, Thessalonica, Greece Communication dans un congrès hal-02801754v1

Poster de conférence (13)

GWASpipe: a Nexflow pipeline for GWAS analyses incorporating quality control Sophia Marguerit,Marc Galland,Cervin Guyomar,Jacques Lagnel,Fabrice Legeaiet al. JOBIM, événement annuel de la bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux, France. ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-05265454v1
LoRa-com INRAE's Shared LoRaWAN Platform for Agri-environmental Research Towards an Efficient IoT Ecosystem Jean-François Bompa,Pierre Catala,Cédric Goby,Baptiste Lagardère,Jacques Lagnelet al. JOBIM, événement annuel de la bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux (France), France Poster de conférence hal-05517793v1
OLGA : Local Tool for management plant Accessions for Biological Resource Centers (BRC) Jacques Lagnel,Franciane Nuissier,Rado Andromalala JOBIM, événement annuel de la bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux (FR), France. 2025 Poster de conférence hal-05517730v1
Deciphering the genetic architecture of plant-pathogen interactions using co-GWAS Moustapha Boubacar-Abdou,Vincent Rittener,Pascale Mistral,Karine Leyre,Jacques Lagnelet al. Journées Jeunes Chercheurs du département BAP 2025, May 2025, Bordeaux, France Poster de conférence hal-05127001v1
Whole genome exon-capture: a targeted approach for addressing apricot genetic diversity on suitable bases for genetic analysis Laure Heurtevin,Jacques Lagnel,Frédérique Bitton,Sylvain Santoni,Christine Tollon-Cordetet al. ISHS Plum Apricot 2024 - 1. International Symposium on Apricot and Plum, Apr 2024, Avignon, France. ⟨10.1371/journal.pone.015460⟩ Poster de conférence hal-05051467v1
A reference genome of Solanum habrochaites Bernard Caromel,Jacques Lagnel,Carole Iampietro,Marie-Claire Le Coant,Marine Sallaberryet al. XVII SOLANACEAE2022 International Conference on the Plant Family of Solanaceae, Nov 2022, Thessaloniki, Greece Poster de conférence hal-04136943v1
Development of a Snakemake “framework/templates” to study the whole-genome transcriptional profiling from a blood-flesh trait (bf) and non blood-flesh trait (non-bf) cultivars in Prunus persica Laure Heurtevin,Thierry Pascal,Bénédicte Quilot-Turion,Martin-Magniette Marie-Laure,Jacques Lagnel Journées ouvertes en biologie, informatique et mathématiques (JOBIM), Jun 2020, Montpellier, France. ⟨10.13140/RG.2.2.15060.63366⟩ Poster de conférence hal-03267808v1
Hybrid de novo genome assembly using Oxford Nanopore Technology, 10X Genomics Linked-Reads sequencing, and Bionano optical map of a non-model species: the case of the melon-cotton aphid Aphis gossypii Jacques Lagnel,Rafael Feriche-Linares,Pierre Bertrand,William Marande,Anne Loiseauet al. JOBIM, 2020, Online, France Poster de conférence hal-04009338v1
Research of candidate genes in peach for resistance to root-knot nematodes and resistance to aphids Myzus persicae Henri Duval,Laure Heurtevin,Naïma Dlalah,Jacques Lagnel,Caroline Callot 10th Rosaceae Genomics Conference, Dec 2020, Barcelona, Spain Poster de conférence hal-03267708v1
Small deletion in a photosynthesis-related gene is involved in anthocyanin accumulation in the mesocarp of bf blood-flesh peaches Laure Heurtevin,Carole Confolent,Bénédicte Quilot-Turion,Sylvie Bureau,Carine Le Bourvellecet al. 10th Rosaceae Genomics Conference, Dec 2020, Barcelone, Spain Poster de conférence hal-03267672v1
AllMine, a flexible pipeline for allele mining Thomas Bersez,Jean-Luc Gallois,Jacques Lagnel JOBIM (Journées Ouvertes Biologie, Informatique et Mathématiques), Jul 2019, Nantes, France Poster de conférence hal-02613672v1
A high-density genotyping strategy based on gene capture in pepper: perspectives for genome wide association study and genetic mapping Sonia Elbelt,Jacques Lagnel,Bernard Caromel,Jacques David,Judith Hirschet al. 17. Eucarpia Meeting on Genetics and Breeding of Capsicum and Eggplant, Sep 2019, Avignon, France. INRA, Centre de recherche Provence-Alpes-Côte d’Azur, 263 p., 2019, Innovations in Genetics and Breeding of Capsicum and Eggplant. Proceedings of the 17th EUCARPIA Meeting on Genetics and Breeding of Capsicum and Eggplant September 11-13, 2019 | Avignon - France Poster de conférence hal-02737663v1
Biocluster: an NGS-dedicated HPC cluster in IMBBC, HCMR Upcoming Upgrade Usage/Partners Training Jacques Lagnel,Tereza Manousaki,Georgios Kotoulas,Antonios Magoulas 9. Hellenic Bioinformatics 2016, Nov 2016, Thessalonica, Greece. 2016 Poster de conférence hal-02799037v1

Pré-publication, Document de travail (4)

Intra-specific NLR allelic diversity and genomic landscape for plant resistance association studies Javier Belinchon-Moreno,Aurelie Berard,Aurelie Canaguier,Isabelle Le-Clainche,Pascale Mistralet al. 2025 Pré-publication, Document de travail hal-05363423v1
Nanopore adaptive sampling to identify the NLR-gene family in melon (Cucumis melo L.) Javier Belinchon-Moreno,Aurelie Berard,Aurelie Canaguier,Veronique Chovelon,Corinne Cruaudet al. 2024 Pré-publication, Document de travail hal-04670606v1
The genomic basis of colour pattern polymorphism in the harlequin ladybird Mathieu Gautier,Junichi Yamaguchi,Julien Foucaud,Anne Loiseau,Aurélien Aussetet al. 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02791082v1
New tools to optmise the analysis of a large RNA-Seq dataset from non model species: development of a hybrid assembly strategy and assessment of library complexity from raw sequencing output. Jacques Lagnel,Khalid Belkhir,Tereza Manousaki,Erick Desmarais,Anastasia Tsagkarakouet al. 2014 Pré-publication, Document de travail (preprint/prepublication) hal-02799163v1