Jacques Nicolas
66
Documents
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Concept Lattices as a Search Space for Graph CompressionICFCA 2019 - 15th International Conference on Formal Concept Analysis, Jun 2019, Francfort, Germany. pp.274-289, ⟨10.1007/978-3-030-21462-3_18⟩
Conference papers
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Learning local substitutable context-free languages from positive examples in polynomial time and data by reductionICGI 2018 - 14th International Conference on Grammatical Inference, Sep 2018, Wrocław, Poland. pp.155 - 168
Conference papers
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FCA in a Logical Programming Setting for Visualization-oriented Graph CompressionInternational Conference on Formal Concept Analysis 2017, Jun 2017, Rennes, France. ⟨10.1007/978-3-319-59271-8_6⟩
Conference papers
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Packing graphs with ASP for landscape simulationIJCAI 2016 - 25th International joint conference on artificial intelligence , Jul 2016, New-york, United States. pp.8
Conference papers
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Comparaison des cibles d’une matrice de score et d’une expression régulière. Application à la recherche de sites de fixation du facteur de transcription LXRJOBIM 2015- 16e Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France
Conference papers
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From formal concepts to analogical complexesCLA 2015, LIMOS, CNRS et Université Blaise Pascal, Oct 2015, Clermont-Ferrand, France. pp.12
Conference papers
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A bottom-up efficient algorithm learning substitutable languages from positive examplesICGI (International Conference on Grammatical Inference), Sep 2014, Kyoto, Japan. pp.49--63
Conference papers
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Automated Enzyme classification by Formal Concept AnalysisICFCA - 12th International Conference on Formal Concept Analysis, Jun 2014, Cluj-Napoca, Romania
Conference papers
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Integration of miRNAs data into a gene network of the pea aphid.7th International Symposium on Molecular Insect Science., 2014, Amsterdam, Netherlands
Conference papers
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Computational Protein Design: trying an Answer Set Programming approach to solve the problem10th Workshop on Constraint-Based Methods for Bioinformatics (WCB'14), Nicos Angelopoulos (Imperial College, UK) Simon de Givry (MIAT-INRA, France), Sep 2014, Lyon, France
Conference papers
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Logol: Expressive Pattern Matching in sequences. Application to Ribosomal Frameshift ModelingPRIB2014 - Pattern Recognition in Bioinformatics, 9th IAPR International Conference, Lukas KALL, Aug 2014, Stockholm, Sweden. pp.34-47, ⟨10.1007/978-3-319-09192-1_4⟩
Conference papers
hal-01059506v1
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Edge Selection in a Noisy Graph by Concept Analysis: Application to a Genomic NetworkECDA - European Conference on Data Analysis - 2013, Jul 2013, Luxembourg, Luxembourg
Conference papers
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Recherche d'instances de motifs expressifs avec Logol. Application à la modélisation d'événements de frameshift -1JOBIM 2012- 13e Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.5-14
Conference papers
hal-00726791v1
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Local Substitutability for Sequence GeneralizationICGI 2012, University of Maryland, Sep 2012, Washington, United States. pp.97-111
Conference papers
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Identification rapide de familles protéiques par dominance12th Annual Congress of the French National Society of Operations Research and Decision Science (ROADEF), École Nationale Supérieure des Mines de Saint-Étienne, Mar 2011, Saint-Étienne, France. pp.791-792
Conference papers
inria-00611457v1
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SHREC'10 Track: Protein ModelsEurographics Workshop on 3D Object Retrieval - 3DOR 2010, May 2010, Norrköping, Sweden
Conference papers
inria-00536680v1
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Prediction and analyzes of non coding RNA sequences in the pea aphid genomeArthropods Genomics, Jun 2010, Kansas City, United States
Conference papers
inria-00537927v1
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From AphidBase and Lepido-DB to an Information System for Insect Plant pest genomics studies.1st Workshop on Information System for Insect Pest, Nov 2009, Rennes, France
Conference papers
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c-GAMMA: Comparative Genome Analysis of Molecular MarkersPattern Recognition in Bioinformatics, Sep 2009, Sheffield, United Kingdom. pp.255-269, ⟨10.1007/978-3-642-04031-3_23⟩
Conference papers
inria-00425373v1
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Identification and characterization of novel anti-infectious peptides from the male genital tract.34th Federation of European Biochemical Societies (FEBS) Congress, Jul 2009, Prague, Czech Republic
Conference papers
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Détection de domaines dans des séquences génomiques : un problème de couverture optimaleFRANCORO V/ROADEF 2007, Feb 2007, Grenoble, France
Conference papers
hal-00186471v1
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Organisation modulaire des séquences d'ADN répétées: application à l'étude des hélitrons non-autonomes dans le génome d'Arabidopsis thalianaXIIIe colloque Eléments Transposables, 2005, Orsay, France
Conference papers
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The genomic basis of the Streptococcus thermophilus health-promoting propertiesJOBIM 2022 - Les journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France. , pp.1-1, 2022
Conference poster
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Storing the declaration of human rights on one data DNA moleculeCominLabs day 2022, Oct 2022, Rennes, France. pp.1-1
Conference poster
hal-03817852v1
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Identification of bacterial strains using ORI (Oxford nanopore Reads Identification)Microbes 2021 - Société Française de Microbiologie, Sep 2021, Nantes, France
Conference poster
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Bacterial strains identification using Oxford Nanopore sequencingJOBIM2020, Jun 2020, Montpellier, France
Conference poster
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Topological and semantic Web based method for analyzing TGF-β signaling pathwaysJOBIM 2015, Dec 2015, Clermont-Ferrand, France. JOBIM : Journées Ouvertes en Biologie, Informatique & Mathématiques, 2015
Conference poster
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Searching for Optimal Orders for Discretized Distance GeometryProceedings of Many Faces of Distances (MDF14), Oct 2014, Campinas, São Paulo, Brazil. 2014
Conference poster
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Artificial Intelligence and BioinformaticsMarquis, P., Papini, O., Prade, H. A Guided Tour of Artificial Intelligence Research, III, Springer, pp.575, 2020, Interfaces and Applications of Artificial Intelligence, 978-3-030-06169-2
Book sections
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IA et bioinformatiqueSébastien Konieczny; Henri Prade. L’intelligence artificielle: De quoi s’agit-il vraiment ?, Cépaduès, pp.101, 2020, 9782364938502
Book sections
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Finding Optimal Discretization Orders for Molecular Distance Geometry by Answer Set ProgrammingS. Fidanova. Studies in Computational Intelligence, 610, Springer, pp.1-15, 2015, Recent Advances in Computational Optimization
Book sections
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Finding and Characterizing Repeats in Plant GenomesDavid Edwards. Plant Bioinformatics: Methods and Protocols, 1374, Humana Press - Springer Science+Business Media, pp.365, 2015, Methods in Molecular Biology, 978-1-4939-3166-8. ⟨10.1007/978-1-4939-3167-5_17⟩
Book sections
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Edge Selection in a Noisy Graph by Concept Analysis – Application to a Genomic NetworkLausen, Berthold; Krolak-Schwerdt, Sabine; Böhmer, Matthias. Data Science, Learning by Latent Structures, and Knowledge Discovery, Springer, pp.550, 2014, Data Science, Learning by Latent Structures, and Knowledge Discovery, 978-3-662-44982-0. ⟨10.1007/978-3-662-44983-7_31⟩
Book sections
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To detect and analyze sequence repeats whatever be their originYves Bigot. Mobile genetic elements : protocols and genomic applications, 859, Springer, pp.69-90, 2012, Springer Protocols, 978-1-61779-602-9. ⟨10.1007/978-1-61779-603-6⟩
Book sections
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Pyramid diagram: visualizing the organization of repetitive sequences in genomes.2005
Other publications
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Recherche et annotation des structures de CRISPR dans l'ensemble des génomes procaryotes[Rapport de recherche] PI-1986, 2011, pp.24
Reports
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Modeling local repeats on genomic sequences[Research Report] RR-6802, INRIA. 2008, pp.43
Reports
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Logol : Modelling evolving sequence families through a dedicated constrained string language[Research Report] RR-6350, INRIA. 2007, pp.19
Reports
inria-00186568v3
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Motif Discovery on Promotor Sequences[Research Report] RR-5714, INRIA. 2005, pp.136
Reports
inria-00070303v1
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Grammatical Inference as Unification[Research Report] RR-3632, INRIA. 1999
Reports
inria-00073042v1
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Analyse syntaxique non déterministe utilisant un modèle de n-grams[Rapport de recherche] RR-3262, INRIA. 1997
Reports
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Syntaxe, raisonnement et génomesSciences du Vivant [q-bio]. Université Rennes 1, 2008
Accreditation to supervise research
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