jean-baptiste masson

Publications

Proceedings/Recueil des communications (1)

Optimal transport unlocks end-to-end learning for single-molecule localization Romain Seailles,Jean-Baptiste Masson,Jean Ponce,Julien Mairal ICLR 2026: The Fourteenth International Conference on Learning Representations, Apr 2026, Rio de Janeiro, Brazil. 2026 Proceedings/Recueil des communications hal-05397581v2

Pré-publication, Document de travail (5)

Information maximization for a broad variety of multi-armed bandit games Alex Barbier--Chebbah,Christian L. Vestergaard,Jean-Baptiste Masson 2025 Pré-publication, Document de travail pasteur-04997815v1
Feeding-state dependent neuropeptidergic modulation of reciprocally interconnected inhibitory neurons biases sensorimotor decisions in Drosophila Eloïse de Tredern,Dylan Manceau,Alexandre Blanc,Panagiotis Sakagiannis,Chloe Barreet al. 2024 Pré-publication, Document de travail hal-04756727v1
Serotonergic Neurons Mediate Operant Conditioning in Drosophila Larvae Kristina T Klein,Elise C Croteau-Chonka,Lakshmi Narayan,Michael Winding,Jean-Baptiste Massonet al. 2021 Pré-publication, Document de travail pasteur-04008262v1
Genuage: visualizing and analyzing multidimensional point cloud data in virtual reality Thomas Blanc,Mohamed El Beheiry,Jean-Baptiste Masson,Bassam Hajj 2020 Pré-publication, Document de travail pasteur-02872314v1
Comparative single-cell transcriptomics of complete insect nervous systems Benjamin T Cocanougher,Jason D Wittenbach,Xi Salina Long,Andrea B Kohn,Tigran P Norekianet al. 2023 Pré-publication, Document de travail pasteur-04009853v1

Article dans une revue (51)

Feeding state-dependent neuropeptidergic modulation of reciprocally interconnected inhibitory neurons biases sensorimotor decisions in Drosophila Eloïse de Tredern,Dylan Manceau,Alexandre Blanc,Abhijit Parameswaran,Panagiotis Sakagianniset al. Nature Communications, 2025, 16 (1), pp.8198. ⟨10.1038/s41467-025-61805-y⟩ Article dans une revue hal-05237474v1
Photorealistic rendering of fetal faces from raw magnetic resonance imaging data Thomas Blanc,Charlotte Godard,David Grevent,Mohamed El Beheiry,Laurent Salomonet al. Ultrasound in Obstetrics and Gynecology = Ultrasound in Obstetrics & Gynecology, In press, ⟨10.1002/uog.29165⟩ Article dans une revue hal-05009620v1
Competition between glycine and GABAA receptors for gephyrin controls their equilibrium populations at inhibitory synapses Dorota Kostrz,Stephanie A Maynard,Serena Camuso,Clemens Schulte,François Laurentet al. Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (52), pp.e2500226122. ⟨10.1073/pnas.2500226122⟩ Article dans une revue hal-05446453v2
Virtual reality-augmented differentiable simulations for digital twin applications in surgical planning Robin Cremese,Charlotte Godard,Alexis Bénichou,Thomas Blanc,Iwan Quemadaet al. Scientific Reports, 2025, 15 (1), pp.24377. ⟨10.1038/s41598-025-99608-2⟩ Article dans une revue pasteur-05337495v1
Plasticity of ventricle position after heart looping in heterotaxy with right isomerism Audrey Desgrange,Emeline Perthame,Carmen Marchiol,Daphné Madec,Laurent Guillemotet al. Science Advances , 2025, 11 (38), pp.eads8192. ⟨10.1126/sciadv.ads8192⟩ Article dans une revue hal-05271935v1
Statistical signature of subtle behavioural changes in large-scale behavioural assays Alexandre Blanc,François Laurent,Alex Barbier--Chebbah,Benjamin Cocanougher,Benjamin M.W. Joneset al. PLoS Computational Biology, 2025, 21 (4), pp.e1012990. ⟨10.1371/journal.pcbi.1012990⟩ Article dans une revue hal-04670703v1
Neural circuits underlying context-dependent competition between defensive actions in Drosophila larvae Maxime Lehman,Chloé Barré,Md Amit Hasan,Benjamin Flament,Sandra Autranet al. Nature Communications, 2025, 16 (1), pp.1120. ⟨10.1038/s41467-025-56185-2⟩ Article dans une revue hal-04918380v1
Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results Kelly Payette,Céline Steger,Roxane Licandro,Priscille de Dumast,Hongwei Bran Liet al. IEEE Transactions on Medical Imaging, 2024, 44, pp.1257-1272. ⟨10.48550/arXiv.2402.09463⟩ Article dans une revue hal-05009633v1
Compression-based inference of network motif sets Alexis Bénichou,Jean-Baptiste Masson,Christian L. Vestergaard PLoS Computational Biology, 2024, 20 (10), pp.e1012460. ⟨10.1371/journal.pcbi.1012460⟩ Article dans une revue hal-04733164v2
Confinement energy landscape classification reveals membrane receptor nano-organization mechanisms Chao Yu,Maximilian Richly,Thi Thuy Hoang,Mohammed El Beheiry,Silvan Türkcanet al. Biophysical Journal, 2024, 123 (13), pp.1882-1895. ⟨10.1016/j.bpj.2024.06.001⟩ Article dans une revue hal-04629849v1
Motion of VAPB molecules reveals ER–mitochondria contact site subdomains Christopher Obara,Jonathon Nixon-Abell,Andrew Moore,Federica Riccio,David Hoffmanet al. Nature, 2024, 626 (7997), pp.169-176. ⟨10.1038/s41586-023-06956-y⟩ Article dans une revue hal-04629851v1
LarvaTagger: Manual and automatic tagging of Drosophila larval behaviour François Laurent,Alexandre Blanc,Lilly May,Lautaro Gándara,Benjamin Cocanougheret al. Bioinformatics, 2024, 40 (7), pp.btae441. ⟨10.1093/bioinformatics/btae441⟩ Article dans une revue pasteur-04629791v1
Fast-track virtual reality software to facilitate 3-dimensional reconstruction in congenital heart disease Francesco Bertelli,Francesca Raimondi,Charlotte Godard,Emma Bergonzoni,Claudia Cattapanet al. Interdisciplinary Cardiovascular and Thoracic Surgery, 2023, 36 (6), pp.ivad087. ⟨10.1093/icvts/ivad087⟩ Article dans une revue hal-04629852v1
Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics Hippolyte Verdier,François Laurent,Alhassan Cassé,Christian L. Vestergaard,Christian Spechtet al. PLoS Computational Biology, 2023, 19 (2), pp.e1010088. ⟨10.1371/journal.pcbi.1010088⟩ Article dans une revue hal-03876446v2
Breast Magnetic Resonance Image Analysis for Surgeons Using Virtual Reality: A Comparative Study Mohamed El Beheiry,Thomas Gaillard,Noémie Girard,Lauren Darrigues,Marie Osdoitet al. JCO Clinical Cancer Informatics, 2023, 5, pp.1127-1133. ⟨10.1200/CCI.21.00048⟩ Article dans une revue pasteur-04008404v1
Approximate information for efficient exploration-exploitation strategies Alex Barbier-Chebbah,Christian L. Vestergaard,Jean-Baptiste Masson Physical Review E , 2023, 109 (5), pp.L052105. ⟨10.1103/PhysRevE.109.L052105⟩ Article dans une revue hal-04147006v1
Management of ischiopagus twin separation with a focus on W–S incision design François Ruiz,Cecilia Neiva-Vaz,Marie-Paule Vazquez,Jean-Baptiste Masson,Mohammed El Beheiryet al. Journal of Pediatric Surgery Case Reports, 2023, 64, pp.101747. ⟨10.1016/j.epsc.2020.101747⟩ Article dans une revue pasteur-04008441v1
Fast‐track virtual reality for cardiac imaging in congenital heart disease Francesca Raimondi,Vladimiro Vida,Charlotte Godard,Francesco Bertelli,Elena Reffoet al. Journal of Cardiac Surgery, 2023, 36 (7), pp.2598-2602. ⟨10.1111/jocs.15508⟩ Article dans une revue pasteur-04008456v1
New Approach to Accelerated Image Annotation by Leveraging Virtual Reality and Cloud Computing Corentin Guérinot,Valentin Marcon,Charlotte Godard,Thomas Blanc,Hippolyte Verdieret al. Frontiers in Bioinformatics, 2022, 1, pp.777101. ⟨10.3389/fbinf.2021.777101⟩ Article dans une revue hal-03795778v1
TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments François Laurent,Hippolyte Verdier,Maxime Duval,Alexander Serov,Christian L Vestergaardet al. Bioinformatics, 2022, 38 (11), pp.3149-3150. ⟨10.1093/bioinformatics/btac291⟩ Article dans une revue pasteur-03695448v1
High-throughput automated methods for classical and operant conditioning of Drosophila larvae Elise Croteau-Chonka,Michael Clayton,Lalanti Venkatasubramanian,Samuel Harris,Benjamin Mw Joneset al. eLife, 2022, 11, pp.e70015. ⟨10.7554/eLife.70015⟩ Article dans une revue hal-04629854v1
Towards Human in the Loop Analysis of Complex Point Clouds: Advanced Visualizations, Quantifications, and Communication Features in Virtual Reality Thomas Blanc,Hippolyte Verdier,Louise Regnier,Guillaume Planchon,Corentin Guérinotet al. Frontiers in Bioinformatics, 2022, 1, ⟨10.3389/fbinf.2021.775379⟩ Article dans une revue hal-03795768v1
Hematopoietic stem cell transplantation chemotherapy causes microglia senescence and peripheral macrophage engraftment in the brain Kurt A Sailor,George Agoranos,Sergio López-Manzaneda,Satoru Tada,Beatrix Gillet-Legrandet al. Nature Medicine, 2022, ⟨10.1038/s41591-022-01691-9⟩ Article dans une revue pasteur-03588683v1
Variational inference of fractional Brownian motion with linear computational complexity Hippolyte Verdier,François Laurent,Alhassan Cassé,Christian L Vestergaard,Jean-Baptiste Masson Physical Review E , 2022, 106, pp.055311. ⟨10.1103/PhysRevE.106.055311⟩ Article dans une revue hal-03612918v3
Challenges of intracellular visualization using virtual and augmented reality Cesar Augusto Valades-Cruz,Ludovic Leconte,Gwendal Fouché,Thomas Blanc,Nathan van Hilleet al. Frontiers in Bioinformatics, 2022, 2, pp.997082:1-997082:9. ⟨10.3389/fbinf.2022.997082⟩ Article dans une revue hal-03790274v1
Learning physical properties of anomalous random walks using graph neural networks Hippolyte Verdier,Maxime Duval,François Laurent,Alhassan Cassé,Christian L. Vestergaardet al. Journal of Physics A: Mathematical and Theoretical, 2021, 54 (23), pp.234001. ⟨10.1088/1751-8121/abfa45⟩ Article dans une revue pasteur-03150190v2
Partial breast resection for multifocal lower quadrant breast tumour using virtual reality Enora Laas,Mohamed El Beheiry,Jean-Baptiste Masson,Caroline Malhaire BMJ Case Reports, 2021, 14 (3), pp.e241608. ⟨10.1136/bcr-2021-241608⟩ Article dans une revue pasteur-04008370v1
Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain Nicolas Dray,Laure Mancini,Udi Binshtok,Felix Cheysson,Willy Supattoet al. Cell Stem Cell, 2021, 28 (8), pp.1-16. ⟨10.1016/j.stem.2021.03.014⟩ Article dans une revue hal-03287988v1
Objective comparison of methods to decode anomalous diffusion Gorka Muñoz-Gil,Giovanni Volpe,Miguel Angel Garcia-March,Erez Aghion,Aykut Argunet al. Nature Communications, 2021, 12 (1), pp.6253. ⟨10.1038/s41467-021-26320-w⟩ Article dans une revue hal-04670713v1
Identifying neural substrates of competitive interactions and sequence transitions during mechanosensory responses in Drosophila Jean-Baptiste Masson,François Laurent,Albert Cardona,Chloé Barré,Nicolas Skatchkovskyet al. PLoS Genetics, 2020, 16 (2), pp.e1008589. ⟨10.1371/journal.pgen.1008589⟩ Article dans une revue hal-02519739v1
Genuage: visualize and analyze multidimensional single-molecule point cloud data in virtual reality Thomas Blanc,Mohamed El Beheiry,Clément Caporal,Jean-Baptiste Masson,Bassam Hajj Nature Methods, 2020, 17 (11), pp.1100 - 1102. ⟨10.1038/s41592-020-0946-1⟩ Article dans une revue hal-02989365v1
DIVA, a 3D virtual reality platform, improves undergraduate craniofacial trauma education Jebrane Bouaoud,Mohamed El Beheiry,Eve Jablon,Thomas Schouman,Chloé Bertoluset al. Journal of Stomatology, Oral and Maxillofacial Surgery, 2020, ⟨10.1016/j.jormas.2020.09.009⟩ Article dans une revue hal-02974248v1
Statistical Tests for Force Inference in Heterogeneous Environments Alexander S Serov,François Laurent,Charlotte Floderer,Karen Perronet,Cyril Favardet al. Scientific Reports, 2020, 10 (1), pp.3783. ⟨10.1038/s41598-020-60220-1⟩ Article dans une revue pasteur-02865729v1
Mapping spatio-temporal dynamics of single biomolecules in living cells François Laurent,Charlotte Floderer,Cyril Favard,Delphine Muriaux,Jean-Baptiste Massonet al. Physical Biology, 2020, 17 (1), pp.015003. ⟨10.1088/1478-3975/ab5167⟩ Article dans une revue pasteur-02408362v1
DIVA: Natural Navigation inside 3D Images Using Virtual Reality Mohamed El Beheiry,Charlotte Godard,Cĺement Caporal,Valentin Marcon,Cecilia Ostertaget al. Journal of Molecular Biology, 2020, 432 (16), pp.4745-4749. ⟨10.1016/j.jmb.2020.05.026⟩ Article dans une revue pasteur-02872140v1
Virtual Reality: Beyond Visualization Mohamed El Beheiry,Sébastien Doutreligne,Clément Caporal,Cecilia Ostertag,Maxime Dahanet al. Journal of Molecular Biology, 2019, 431 (7), pp.1315-1321. ⟨10.1016/j.jmb.2019.01.033⟩ Article dans une revue pasteur-02872135v1
Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells Charlotte Floderer,Jean-Baptiste Masson,Elise Boilley,Sonia Georgeault,Peggy Meridaet al. Scientific Reports, 2018, 8 (1), pp.16283. ⟨10.1038/s41598-018-34536-y⟩ Article dans une revue pasteur-01930758v1
Olfactory coding in the turbulent realm Vincent Jacob,Christelle Monsempes,Jean-Pierre Rospars,Jean-Baptiste Masson,Philippe Lucas PLoS Computational Biology, 2017, 13 (12), ⟨10.1371/journal.pcbi.1005870⟩ Article dans une revue hal-02624610v1
Gradients of Rac1 Nanoclusters Support Spatial Patterns of Rac1 Signaling Amanda Remorino,Simon de Beco,Fanny Cayrac,Fahima Di Federico,Gaetan Cornilleauet al. Cell Reports, 2017, 21 (7), pp.1922-1935. ⟨10.1016/j.celrep.2017.10.069⟩ Article dans une revue hal-01637091v1
Competitive Disinhibition Mediates Behavioral Choice and Sequences in Drosophila Tihana Jovanic,Casey Martin Schneider-Mizell,Mei Shao,Jean-Baptiste Masson,Gennady Denisovet al. Cell, 2016, 167 (3), pp.858-870.e19. ⟨10.1016/j.cell.2016.09.009⟩ Article dans une revue hal-04194755v1
A Primer on the Bayesian Approach to High-Density Single-Molecule Trajectories Analysis Mohamed El beheiry,Silvan Türkcan,Maximilian u. Richly,Antoine Triller,Antigone Alexandrouet al. Biophysical Journal, 2016, 110 (6), pp.1209 - 1215. ⟨10.1016/j.bpj.2016.01.018⟩ Article dans une revue hal-01421582v1
Investigating the Cell Membrane via Single Particle Tracking, Bayesian Inference and Hydrodynamic Force Application Maximilian Richly,Silvan Türkcan,Cédric Bouzigues,Michel R. Popoff,Jean-Baptiste Massonet al. Biophysical Journal, 2014, 106 (2), p633a. ⟨10.1016/j.bpj.2013.11.3504⟩ Article dans une revue hal-01048723v1
Using insect electroantennogram sensors on autonomous robots for olfactory searches Dominique Martinez,Lotfi Arhidi,Elodie Demondion,Jean-Baptiste Masson,Philippe P. Lucas Journal of visualized experiments : JoVE, 2014, 90 (90), pp.e51704. ⟨10.3791/51704⟩ Article dans une revue hal-01111341v1
Probing membrane protein interactions with their lipid raft environment using single-molecule tracking and Bayesian inference analysis. Silvan Türkcan,Maximilian U. Richly,Antigoni Alexandrou,Jean-Baptiste Masson PLoS ONE, 2013, 8 (1), pp.e53073. ⟨10.1371/journal.pone.0053073⟩ Article dans une revue hal-00817161v1
Olfactory receptor neuron coding in the turbulent realm Jean-Baptiste Masson,Christelle Monsempes,Jean-Pierre Rospars,Philippe Lucas BMC Neuroscience, 2013, 14 (Suppl 1), pp.P315. ⟨10.1186/1471-2202-14-S1-P315⟩ Article dans une revue pasteur-00842294v1
Calibrating optical tweezers with Bayesian inference Maximilian U. Richly,Silvan Türkcan,Antoine Le Gall,Nicolas Fiszman,Jean-Baptiste Massonet al. Optics Express, 2013, 21 (25), pp.31578. ⟨10.1364/OE.21.031578⟩ Article dans une revue hal-00918884v1
Inflammatory chemokines direct and restrict leukocyte migration within live tissues as glycan-bound gradients. Milka Sarris,Jean-Baptiste Masson,Damien Maurin,Lieke M van Der Aa,Pierre Boudinotet al. Current Biology, 2012, 22 (24), pp.2375-82. ⟨10.1016/j.cub.2012.11.018⟩ Article dans une revue hal-00880492v1
A Bayesian Inference Scheme to Extract Diffusivity and Potential Fields from Confined Single-Molecule Trajectories Silvan Tuerkcan,Antigoni Alexandrou,Jean-Baptiste Masson Biophysical Journal, 2012, 102 (10), pp.2288-2298. ⟨10.1016/j.bpj.2012.01.063⟩ Article dans une revue hal-00817167v1
Observing the Confinement Potential of Bacterial Pore-Forming Toxin Receptors Inside Rafts with Nonblinking Eu3+-Doped Oxide Nanoparticles Silvan Türkcan,Jean-Baptiste Masson,Didier Casanova,Geneviève Mialon,Thierry Gacoinet al. Biophysical Journal, 2012, 102 (10), pp.2299-2308. ⟨10.1016/j.bpj.2012.03.072⟩ Article dans une revue hal-00865949v1
Inferring maps of forces inside cell membrane microdomains J.-B. Masson,Didier Casanova,Silvan Türkcan,G. Voisinne,Michel Popoffet al. Physical Review Letters, 2009, 102 (4), pp.48103. ⟨10.1103/PhysRevLett.102.048103⟩ Article dans une revue hal-00811680v1
A model for thermal exchange in axons during action potential propagation. Jean-Baptiste Masson,Guilhem Gallot European Biophysics Journal, 2008, 37 (6), pp.1001-1006. ⟨10.1007/s00249-008-0329-5⟩ Article dans une revue inserm-00319737v1

Communication dans un congrès (4)

Approximate information maximization for bandit games Alex Barbier-Chebbah,Christian L. Vestergaard,Jean-Baptiste Masson,Etienne Boursier 28th International Conference on Artificial Intelligence and Statistics, May 2025, Phuket, Thailand. pp.316-324 Communication dans un congrès hal-04246907v5
Optical tweezers calibration with Bayesian inference (Orale) Silvan Türkcan,Maximilian U. Richly,Antoine Le Gall,Nicolas Fiszman,Jean-Baptiste Massonet al. SPIE NanoScience + Engineering 2014, Conference on Optical Trapping and Optical Micromanipulation XI, Aug 2014, San Diego, United States. pp.UNSP 916415 Communication dans un congrès hal-01664147v1
Calibrating optical tweezers with Bayesian inference (Poster) Maximilian U. Richly,Silvan Türkcan,Antoine Le Gall,Nicolas Fiszman,Jean-Baptiste Massonet al. 58th Annual Meeting - Biophysical Society, Feb 2014, San Francisco, United States Communication dans un congrès hal-01709073v1
Hole depth dependence of the extraordinary electromagnetic transmission in the terahertz domain A. Podzorov,J.-B. Masson,Guilhem Gallot 2009 34th International Conference on Infrared, Millimeter, and Terahertz Waves (IORMMW-THz 2009), Sep 2009, Busan, South Korea. pp.1-2, ⟨10.1109/ICIMW.2009.5324713⟩ Communication dans un congrès hal-02374375v1

Poster de conférence (1)

FROM MOLECULES TO BEHAVIOR: A NEURAL CIRCUIT MODEL OF ALZHEIMER’S DISEASE Anqi Zhou,Tihana Jovanic,Jean-Baptiste Masson IBRO 11th World Congress of Neuroscience, Sep 2023, Grenade (Espagne), Spain. Elsevier, IBRO Neuroscience Reports, 15 (S1), pp.S665, 2023, ⟨10.1016/j.ibneur.2023.08.1332⟩ Poster de conférence hal-04700925v1

Notice d’encyclopédie ou de dictionnaire (1)

High-Speed Localization Microscopy and Single-Particle Tracking (2nd edition) Mohamed El Beheiry,Bassam Hajj,Jean-Baptiste Masson,Maxime Dahan Encyclopedia of Cell Biology, 2023, pp.152-160. ⟨10.1016/B978-0-12-821618-7.00118-8⟩ Notice d’encyclopédie ou de dictionnaire pasteur-04008207v1