Jean-Christophe Palauqui

Présentation

Professional background

1999-Present: INRAE Researcher, Institut J-P Bourgin, Versailles (France)

1998-1999: Post-doctoral Fellow. Sainsbury Lab, John Innes Centre, Norwich (UK). BBSRC 1998. PI: D. Baulcombe

1994-1998: PhD in Plant Molecular Biology, Institu J-P Bourgin, Versailles (France). PI: H. Vaucheret

Publications

Article dans une revue (40)

M2WISH : An easy and efficient protocol for whole‐mount mRNA in situ hybridization that allows 3D cell resolution of gene expression in Arabidopsis thaliana Liudmila Chelysheva,Halima Morin,Eric Biot,Antoine Nicolas,Philippe Rechet al. The Plant Journal, 2024, ⟨10.1111/tpj.16792⟩ Article dans une revue hal-04644422v1
TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images Elise Laruelle,Jean-Christophe Palauqui,Philippe Andrey,Alain Trubuil Plant Methods, 2023, 19, pp.128. ⟨10.1186/s13007-023-01106-x⟩ Article dans une revue hal-04398556v1
Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis Elise Laruelle,Katia Belcram,Alain Trubuil,Jean-Christophe Palauqui,Philippe Andrey eLife, 2022, 11, pp.e79224. ⟨10.7554/eLife.79224⟩ Article dans une revue hal-04301574v1
BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon Kaori Sakai,Sylvie Citerne,Sébastien Antelme,Philippe Le Bris,Sylviane Danielet al. BMC Plant Biology, 2021, 21 (1), pp.196. ⟨10.1186/s12870-021-02970-2⟩ Article dans une revue hal-03222326v1
Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos Julien Moukhtar,Alain Trubuil,Katia Belcram,David Legland,Zhor Khadiret al. PLoS Computational Biology, 2019, 15 (2), pp.e1006771. ⟨10.1371/journal.pcbi.1006771⟩ Article dans une revue hal-02393309v1
Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology Kaori Sakai,Florence Charlot,Thomas Le Saux,Sandrine Bonhomme,Fabien Noguéet al. Plant Methods, 2019, 15 (1), ⟨10.1186/s13007-019-0459-z⟩ Article dans une revue hal-02309578v2
OCTOPUS Negatively Regulates BIN2 to Control Phloem Differentiation in Arabidopsis thaliana Pauline Anne,Marianne Azzopardi,Lionel Gissot,Sébastien Beaubiat,Kian Hematyet al. Current Biology, 2015, 25 (19), pp.2584 - 2590. ⟨10.1016/j.cub.2015.08.033⟩ Article dans une revue hal-01536504v1
The vasculature complexity and connectivity gene encodes a plant-specific protein required for embryo provasculature development Hannetz Roschzttardtz,Julio Paez-Valencia,Tejaswi Dittakavi,Sathya Jali,Francisca C Reyeset al. Plant Physiology, 2014, 166 (2), pp.889-902. ⟨10.1104/pp.114.246314⟩ Article dans une revue hal-02631141v1
Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3 (RGA) in embryo development and seed germination. Alessandra Boccaccini,Silvia Santopolo,Davide Capauto,Riccardo Lorrai,Emanuele Minutelloet al. BMC Plant Biology, 2014, 14, pp.200. ⟨10.1186/s12870-014-0200-z⟩ Article dans une revue pasteur-01182911v1
Modeling of plant embryo morphodynamics at early developmental stages S.V. S. Nikolaev,N. A. N. A. Kolchanov,S. K. S. K. Golushko,Jean-Christophe J.-C. Palauqui,Aurélie A. Urbanet al. Russian Journal of Genetics: Applied Research, 2013, 3 (3), pp.176-183. ⟨10.1134/S207905971303009X⟩ Article dans une revue hal-01001000v1
Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses Ronny R. Brandt,Merce M. Salla-Martret,Jordi J. Bou-Torrent,Thomas T. Musielak,Mark M. Stahlet al. The Plant Journal, 2012, 72 (1), pp.31 - 42. ⟨10.1111/j.1365-313X.2012.05049.x⟩ Article dans une revue hal-01004523v1
OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana Elisabeth Truernit,Helene Baub,Katia Belcram,Julien Barthélémy,Jean-Christophe Palauqui Development (Cambridge, England), 2012, 139 (7), pp.1306 - 1315. ⟨10.1242/dev.072629⟩ Article dans une revue hal-01003441v1
ATHB4 and HAT3, two class II HD-ZIP transcription factors, control leaf development in Arabidopsis Jordi Bou-Torrent,Merce Salla-Martret,Ronny Brandt,Thomas Musielak,Jean-Christophe Palauquiet al. Plant Signaling and Behavior, 2012, 7 (11), pp.1382-1387. ⟨10.4161/psb.21824⟩ Article dans une revue hal-01204162v1
Phyllotaxis: In Search of the Golden Angle Jean-Christophe J.-C. Palauqui,Patrick P. Laufs Current Biology, 2011, 21 (13), pp.R502 - R504. ⟨10.1016/j.cub.2011.05.054⟩ Article dans une revue hal-01004329v1
Very-long-chain fatty acids are required for cell plate formation during cytokinesis in Arabidopsis thaliana Liên Bach,Lionel Gissot,Jessica Marion,Frédérique Tellier,Patrick Moreauet al. Journal of Cell Science, 2011, 124 (19), pp.3223-3234. ⟨10.1242/jcs.074575⟩ Article dans une revue hal-00855927v1
Sphingolipids containing very-long-chain fatty acids define a secretory pathway for specific polar plasma membrane protein targeting in Arabidopsis. Jonathan E Markham,Diana Molino,Lionel Gissot,Yannick Bellec,Kian Hématyet al. The Plant cell, 2011, 23 (6), pp.2362-78. ⟨10.1105/tpc.110.080473⟩ Article dans une revue hal-00855942v1
Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis François Roudier,Lionel Gissot,Frédéric Beaudoin,Richard Haslam,Louise V. Michaelsonet al. The Plant cell, 2010, 22 (2), pp.364-375. ⟨10.1105/tpc.109.071209⟩ Article dans une revue hal-00856101v1
NOF1 encodes an arabidopsis protein involved in the control of rRNA expression Erwana Harscoet,Bertrand Dubreucq,Jean-Christophe Palauqui,Loic Lepiniec PLoS ONE, 2010, 5 (9), pp.e12829. ⟨10.1371/journal.pone.0012829⟩ Article dans une revue hal-01203890v1
High-contrast three-dimensional imaging of the Arabidopsis leaf enables the analysis of cell dimensions in the epidermis and mesophyll. Nathalie Wuyts,Jean-Christophe Palauqui,Geneviève Conejero,Jean-Luc Verdeil,Christine Granieret al. Plant Methods, 2010, 6, pp.17. ⟨10.1186/1746-4811-6-17⟩ Article dans une revue hal-00508435v1
Looking deeper: whole-mount confocal imaging of plant tissue for the accurate study of inner tissue layers. Elisabeth Truernit,Jean-Christophe Palauqui Plant Signaling and Behavior, 2009, 4 (2), pp.151-152. ⟨10.4161/psb.4.2.7683⟩ Article dans une revue hal-02657732v1
High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of Phloem development and structure in Arabidopsis. Elisabeth Truernit,Hélène Bauby,Bertrand Dubreucq,Olivier Grandjean,John Runionset al. The Plant cell, 2008, 20 (6), pp.1494-1503. ⟨10.1105/tpc.107.056069⟩ Article dans une revue hal-02663189v1
Protophloem differentiation in early Arabidopsis thaliana development Hélène Bauby,Fanchon Divol,Elisabeth Truernit,Olivier Grandjean,Jean-Christophe J.-C. Palauqui Plant and Cell Physiology, 2007, 48 (1), pp.97-109 Article dans une revue hal-02655495v1
Alterations in sphingolipid synthesis in the model plant Arabidopsis thaliana is associated with cell polarity and developmental defects François Roudier,Lionel L. Gissot,Julien Vignard,Christine Rochat,Patrick Moreauet al. Chemistry and Physics of Lipids, 2006, 143 (1-2), pp.100 Article dans une revue hal-02657873v1
Systemic response to aphid infestation by Mycus persicae in the phloem of Apium graveolens Fanchon Divol,Francoise F. Vilaine,S. Thibivilliers,Joelle J. Amselem,Jean-Christophe J.-C. Palauquiet al. Plant Molecular Biology, 2005, 57 (4), pp.517-540. ⟨10.1007/s11103-005-0338-z⟩ Article dans une revue istex hal-02682711v1
Diversity of the superfamily of phloems lectins (Phloem protein 2) in angiosperms Sylvie Dinant,A.M. Clark,Y. Zhu,Francoise F. Vilaine,Jean-Christophe J.-C. Palauquiet al. Plant Physiology, 2003, 131, pp.114-128 Article dans une revue hal-02679214v1
Towards deciphering phloem : a transcriptome analysis of the phloem of Apium graveolens Françoise Vilaine,Jean-Christophe Palauqui,J. Amselem,Chantal Zusiak,Rémi Lemoineet al. The Plant Journal, 2003, 36, pp.67-81. ⟨10.1046/j.1365-313X.2003.01855.x⟩ Article dans une revue hal-00096795v1
Les macromolécules transportées dans le phloème Jean-Christophe J.-C. Palauqui Comptes Rendus de l'Académie d'Agriculture de France, 2002, 88 (8), pp.69-77 Article dans une revue hal-02674534v1
Activation of systemic acquired silencing by localised introduction of DNA Jean-Christophe Palauqui,Sandrine Balzergue Current Biology, 1999, 9 (2), pp.59-66. ⟨10.1016/S0960-9822(99)80016-5⟩ Article dans une revue hal-02694052v1
Arabidopsis mutants impaired in cosuppression Taline T. Elmayan,Sandrine Balzergue,F. Béon,V. Bourdon,J. Daubremetet al. The Plant cell, 1998, 10, pp.1747-1757 Article dans une revue hal-02687808v1
Infection of Tobacco or Arabidopsis plants by CMV counteracts systemic post-transcriptional silencing of nonviral (trans)genes Christophe Beclin,R. Berthomé,Jean-Christophe J.-C. Palauqui,Mark M. Tepfer,Herve H. Vaucheret Virology, 1998, 252, pp.313-317 Article dans une revue hal-02693464v1
Transgenes are dispensable for the RNA degradation step of cosuppression Jean-Christophe J.-C. Palauqui,Herve H. Vaucheret Proceedings of the National Academy of Sciences of the United States of America, 1998, 95, pp.9675-9680 Article dans une revue hal-02686361v1
Transgene-induced gene silencing in plants Herve H. Vaucheret,Christophe Beclin,Taline T. Elmayan,C. Godon,J.B. Morelet al. The Plant Journal, 1998, 16 (6), pp.651-659 Article dans une revue hal-02694449v1
Infection of Tobacco or Arabidopsis Plants by CMV Counteracts Systemic Post-transcriptional Silencing of Nonviral (Trans)Genes Christophe Béclin,Richard Berthomé,Jean-Christophe Palauqui,Mark Tepfer,Hervé Vaucheret Virology, 1998, 252 (2), pp.313-317. ⟨10.1006/viro.1998.9457⟩ Article dans une revue hal-03741531v1
Systemic acquired silencing : transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions Jean-Christophe J.-C. Palauqui,Taline T. Elmayan,J.M. Pollien,Herve H. Vaucheret EMBO Journal, 1997, 16 (15), pp.4738-4745 Article dans une revue hal-02693816v1
A transcriptionally active state is required for post-transcriptional silencing (cosuppression) of nitrate reductase host genes and transgenes. Herve H. Vaucheret,Laurent Nussaume,Jean-Christophe J.-C. Palauqui,Isabelle I. Quillere,Taline T. Elmayan The Plant cell, 1997, 9, pp.1495-1504 Article dans une revue hal-02689537v1
Nitrate reductase and nitrite reductase as targets to study gene silencing phenomena in transgenic plants Herve H. Vaucheret,Jean-Christophe J.-C. Palauqui,P. Mourrain,Taline T. Elmayan Euphytica, 1997, 00, pp.195-200 Article dans une revue hal-02683732v1
Contrôle épigénétique des (trans)gènes chez les plantes supérieures Herve H. Vaucheret,Christophe Beclin,Taline T. Elmayan,P. Mourain,Jean-Christophe J.-C. Palauquiet al. Comptes rendus des séances de la Société de biologie et de ses filiales, 1997, 191 (2), pp.161-163 Article dans une revue hal-02692401v1
Frequencies, timing, and spatial patterns of co-suppression of nitrate reductase and nitrite reductase in transgenic tobacco plants Jean-Christophe J.-C. Palauqui,Taline T. Elmayan,F. Dorlhac de Borne,P. Crete,Cyril Charleset al. Plant Physiology, 1996, 112, pp.1447-1456 Article dans une revue hal-02688248v1
Field trial analysis of nitrate reductase co-suppression: a comparative study of 38 combinations of transgene loci Jean-Christophe J.-C. Palauqui,Herve H. Vaucheret Plant Molecular Biology, 1995, 29, pp.149-159 Article dans une revue hal-02708779v1
Molecular and genetic analysis of nitrite reductase co-suppression in transgenic tobacco plants Herve H. Vaucheret,Jean-Christophe J.-C. Palauqui,Taline T. Elmayan,B. Moffatt Molecular and General Genetics MGG, 1995, 248, pp.311-317 Article dans une revue hal-02713839v1

Communication dans un congrès (17)

Deciphering cell division patterns in plant early embryogenesis by combining 3D image analysis and computer modelling Elise Laruelle,Julien Moukhtar,Alain Trubuil,Katia Belcram,David Leglandet al. Plant Growth and Form: International Symposium on Quantitative Plant Morphodynamics, Sep 2019, Heidelberg, Germany Communication dans un congrès hal-02786917v1
Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesis Julien Moukhtar El Demerdache,Elise Laruelle,Alain Trubuil,Katia Belcram,David Leglandet al. Quantitative BioImaging Conference, Jan 2019, Rennes, France Communication dans un congrès hal-02791564v1
Cellular determinants of early embryo development : seeing what is hidden Jean-Denis Faure,Jean-Christophe J.-C. Palauqui The Seed Biology Paris Summer School, Jul 2015, Paris, France Communication dans un congrès hal-01528027v1
Computational modelling of cell division patterns during plant early embryogenesis Julien Moukhtar,Katia Belcram,Alain Trubuil,David Legland,Jean-Christophe Palauquiet al. International Workshop on Image Analysis Methods for the Plant Sciences (IAMPS), Sep 2015, Louvain-la-Neuve, Belgium Communication dans un congrès hal-02795769v1
On 3D reconstruction and lineage of Arabidopsis embryos from a collection of fixed samples Aurelie A. Urbain,Jean-Christophe J.-C. Palauqui,S.V. S. Nikolaev,N.A. N. Kolchanov,Alain Trubuil EMBO Confererence Series, Morphogenesis and Dynamics of Multicellular Systems, Sep 2012, Heidelberg, Germany. pp.1 Communication dans un congrès hal-01001051v1
Systemic response to aphid infestation by Myzus persicae in the phloem of apuim graveolens Fanchon Divol,Françoise Vilaine,Sandra Thibivilliers,Joëlle Amselem,Jean-Cristophe Palauquiet al. congrès SEB, Jul 2005, Paris, France Communication dans un congrès hal-02913051v1
Transcriptome analysis of the phloem in the plant response to virus, bacteria or fungi pathogens Sandra Thibivilliers,Fanchon Divol,Francoise F. Vilaine,Joëlle Amselem,Rachid Aazizet al. Journées thématiques SFBV, Apr 2004, Poitiers, France Communication dans un congrès hal-02913043v1
New insights on phloem processes provided by transcriptome analysis Sylvie S. Dinant,Fanchon Divol,Sandra Thibivilliers,Joelle J. Amselem,Jean-Christophe Palauquiet al. Journées thématiques SFBV, Apr 2004, Poitiers, France Communication dans un congrès hal-02913040v1
identification of markers involved in the differenciation of phloem in arabidopsis thaliana Hélène Bauby,Sylvie Dinant,Francoise Vilaine,Georges Pelletier,Jean-Christophe Palauqui Phloem, Aug 2003, Bayreuth, Germany Communication dans un congrès hal-02913037v1
Phloem transcriptome analysis Rémi Lemoine,Lucie Landouar-Arsivaud,Laurence Maurousset,Françoise Vilaine,Jean-Christophe Palauquiet al. International Conférence on Phloem Transport, Aug 2003, Bayreuth, Germany Communication dans un congrès hal-00107932v1
Transcriptome analysis of the phloem of in the plant response to aphid feeding Fanchon Divol,Francoise F. Vilaine,Sandra Thibivilliers,Joelle J. Amselem,Jean-Christophe Palauquiet al. Phloem, Aug 2003, Bayreuth, Germany Communication dans un congrès hal-02913028v1
a transcriptome analysis of the phloem in the plant response to aphis feeding Fanchon Divol,Francoise F. Vilaine,Jean-Christophe Palauqui,Sylvie S. Dinant Colloque Genoplante, Oct 2003, Poitiers, France Communication dans un congrès hal-02912998v1
Toward phloem deciphering : a transcriptome analysis of the phloem of apium graveolens in arabidopsis thaliana Francoise Vilaine,Jean-Christophe Palauqui,Joëlle Amselem,Chantal Kusiak,Rémi Lemoineet al. Phloem, Aug 2003, Bayreuth, Germany Communication dans un congrès hal-02913035v1
Plant defense response in the phloem of Celery upon aphid infestation Fanchon Divol,Jean-Christophe Palauqui,Francoise F. Vilaine,Rachid Aaziz,B. Mabaet al. Colloque génoplante, Oct 2001, Poitiers, France Communication dans un congrès hal-02912993v1
Unravelling the macromolecular movement through plasmodesmata Rachid Aaziz,Jean-Christophe Palauqui,Francoise Vilaine,Rémi Lemoine,Sylvie Dinant Quatrième colloque généralde la Société Française de Physiologie végétale, Dec 2000, Paris, France Communication dans un congrès hal-02912985v1
Recherche de promoteurs a expression phloeme -spécifique chez le céleri (Apium graveolens) Francoise Vilaine,Sylvie Dinant,Jean-Christophe Palauqui 1er marché aux projets "GRAINES", Nov 1999, Paris, France Communication dans un congrès hal-02912972v1
Analysis of phloem formation in celery by c-DNA sequencing Sylvie Dinant,Françoise Vilaine,Murielle Gagneux,Jean-Christophe Palauqui,Chantal Kusiaket al. International Congress of assimilate transport and partitionning., Aug 1999, Newcastle, Australia Communication dans un congrès hal-02912978v1

Poster de conférence (1)

Training a deep neural network to learn 3D division rules Alexandre Durrmeyer,Jean-Christophe Palauqui,Philippe Andrey 7th International Plant Computational Biology Workshop, Sep 2023, Cambridge (Angleterre), United Kingdom Poster de conférence hal-04829522v1

Chapitre d'ouvrage (2)

Studying Cell Division Plane Positioning in Early-Stage Embryos Katia Belcram,Jean-Christophe Palauqui,Martine Pastuglia Plant Cell Division, 2382, Springer US, pp.141-154, 2022, Methods in Molecular Biology, 978-1-0716-1743-4. ⟨10.1007/978-1-0716-1744-1_9⟩ Chapitre d'ouvrage hal-03766433v1
Studying cell division plane positioning in early-stage embryos Katia Belcram,Jean-Christophe Palauqui,Martine Pastuglia Plant Cell Division, 1370, Humana Press Inc., 13 p., 2016, Methods in Molecular Biology, 978-1-4939-3141-5. ⟨10.1007/978-1-4939-3142-2_14⟩ Chapitre d'ouvrage hal-01532553v1

Pré-publication, Document de travail (3)

Deep learning of geometrical cell division rules Alexandre Durrmeyer,Jean-Christophe Palauqui,Philippe Andrey 2025 Pré-publication, Document de travail hal-05280518v1
M2WISH: an easy and efficient protocol for whole-mount mRNA in situ hybridization that allows 3D cell resolution of gene expression in Arabidopsis thaliana Liudmila Chelysheva,Halima Morin,Eric Biot,Antoine Nicolas,Philippe Rechet al. 2024 Pré-publication, Document de travail hal-04526089v1
Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis Elise Laruelle,Katia Belcram,Alain Trubuil,Jean-Christophe Palauqui,Philippe Andrey 2022 Pré-publication, Document de travail hal-03766429v1