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Jean-Francois Martin



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The influence of native populations' genetic history on the reconstruction of invasion routes: the case of a highly invasive aquatic species

Thomas Brazier , Emira Cherif , Jean-François Martin , André Gilles , Simon Blanchet
Biological Invasions, 2022, 24, pp.2399-2420. ⟨10.1007/s10530-022-02787-6⟩
Journal articles hal-03656986v1
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Metabarcoding and ecological interaction networks for selecting candidate biological control agents

Mélodie Ollivier , Vincent Lesieur , Johannes Tavoillot , Fanny Bénetière , Marie‐stéphane Tixier
Journal of Applied Ecology, 2021, 58 (12), pp.2866-2880. ⟨10.1111/1365-2664.14016⟩
Journal articles hal-03695123v1
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Suspect screening and targeted analyses: Two complementary approaches to characterize human exposure to pesticides

Nathalie Bonvallot , Emilien L. Jamin , L. Regnaut , Jean-François Martin , C. Chevrier
Science of the Total Environment, 2021, 786, pp.147499. ⟨10.1016/j.scitotenv.2021.147499⟩
Journal articles hal-03268812v1

Early Detection of the Root-Knot Nematode Meloidogyne hapla Through Developing a Robust Quantitative PCR Approach Compliant With the Minimum Information for Publication of Quantitative Real-Time PCR Experiments Guidelines

Johannes Tavoillot , Thierry Mateille , Nadine Ali , Anne-Marie Chappé , Jean-François Martin
Plant Disease, 2021, 105 (10), pp.2836-2843. ⟨10.1094/PDIS-11-20-2408-RE⟩
Journal articles hal-03374345v1

Gut microbiota in a host–brood parasite system: insights from common cuckoos raised by two warbler species

Lucie Schmiedová , Jakub Kreisinger , Milica Požgayová , Marcel Honza , Jean-François Martin
FEMS Microbiology Ecology, 2020, 96 (9), pp.fiaa143. ⟨10.1093/femsec/fiaa143⟩
Journal articles hal-02975154v1
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Characterising ecological interaction networks to support risk assessment in classical biological control of weeds

Mélodie Ollivier , Vincent Lesieur , Sathyamurthy Raghu , Jean-François Martin
Current Opinion in Insect Science, 2020, 38, pp.40-47. ⟨10.1016/j.cois.2019.12.002⟩
Journal articles hal-02622752v1
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How being synanthropic affects the gut bacteriome and mycobiome: comparison of two mouse species with contrasting ecologies

Barbora Bendová , Jaroslav Pialek , Ľudovít Ďureje , Lucie Schmiedová , Dagmar Čížková
BMC Microbiology, 2020, 20 (1), ⟨10.1186/s12866-020-01859-8⟩
Journal articles hal-02908216v1
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Trait differentiation between native and introduced populations of the invasive plant Sonchus oleraceus L. (Asteraceae)

Mélodie Ollivier , Elena Kazakou , Maxime Corbin , Kevin Sartori , Ben Gooden
NeoBiota, 2020, 55, pp.85-115. ⟨10.3897/neobiota.55.49158⟩
Journal articles hal-02562275v1
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Microbiota Diversity Within and Between the Tissues of Two Wild Interbreeding Species

Emmanuel Guivier , Jean-François Martin , Nicolas Pech , Arnaud Ungaro , Rémi Chappaz
Microbial ecology, 2018, 75 (3), pp.799-810. ⟨10.1007/s00248-017-1077-9⟩
Journal articles hal-02270253v1
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Fecal microbiota associated with phytohaemagglutinin-induced immune response in nestlings of a passerine bird

Jakub Kreisinger , Lucie Schmiedová , Adéla Petrželková , Oldřich Tomášek , Marie Adamkova
Ecology and Evolution, 2018, 8 (19), pp.9793-9802. ⟨10.1002/ece3.4454⟩
Journal articles hal-02270244v1
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Implications of a phylogeographic approach for the selection of Ceutorhynchus assimilis as a potential biological control agent for Lepidium draba

Vincent Lesieur , Jean-François Martin , Hinz L Hariet , Boris B. Fumanal , Sobhian Rouhollah
Biological Control, 2018, 123, pp.43-52. ⟨10.1016/j.biocontrol.2018.05.001⟩
Journal articles hal-02270252v1
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Challenges and advances for transcriptome assembly in non-model species

Arnaud Ungaro , Nicolas Pech , Jean-François Martin , R. J. Scott Mccairns , Jean-Philippe Mevy
PLoS ONE, 2017, 12 (9), pp.e0185020. ⟨10.1371/journal.pone.0185020⟩
Journal articles hal-01681642v1
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Variation between the oral and faecal microbiota in a free-living passerine bird, the great tit (Parus major)

Lucie Kropáčková , Hana Pechmanová , Michal Vinkler , Jana Svobodová , Hana Velová
PLoS ONE, 2017, 12 (6), pp.e0179945. ⟨10.1371/journal.pone.0179945⟩
Journal articles hal-02336539v2
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DNA Metabarcoding of Amazonian Ichthyoplankton Swarms

M.E. Maggia , Y. Vigouroux , J.-F. Renno , F. Duponchelle , E. Desmarais
PLoS ONE, 2017, 12 (1), pp.e0170009. ⟨10.1371/journal.pone.0170009⟩
Journal articles hal-01470522v1
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A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies

Emmanuel Corse , Emese Meglecz , Gait Archambaud , Morgane Ardisson , Jean-François Martin
Molecular Ecology Resources, 2017, 17 (6), pp.e146-e159. ⟨10.1111/1755-0998.12703⟩
Journal articles hal-01681595v1
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Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird

Lucie Kropackova , Adela Petrzelkova , Oldrich Tomasek , Tomas Albrecht , Clarissa Schwab
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.00050⟩
Journal articles hal-01600971v1
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Phylogeography of the Wheat Stem Sawfly, Cephus cinctus Norton (Hymenoptera: Cephidae): Implications for Pest Management

Vincent Lesieur , Jean-François Martin , David Weaver , Kim A Hoelmer , David Smith
PLoS ONE, 2016, 11 (12), pp.e0168370. ⟨10.1371/journal.pone.0168370⟩
Journal articles hal-02336540v1

Development and characterization of 11 microsatellite markers in the root-gall-forming weevil, Ceutorhynchus assimilis (Coleoptera: Curculionidae)

V. Lesieur , M. Jeanneau , Jean-François Martin , Marie-Claude Bon
Applied Entomology and Zoology, 2016, 51 (3), pp.495 - 500. ⟨10.1007/s13355-016-0414-7⟩
Journal articles hal-01601364v1

New set of microsatellite markers for the spotted-wing Drosophila suzukii (Diptera: Drosophilidae): a promising molecular tool for inferring the invasion history of this major insect pest

Anne Fraimout , Anne Loiseau , Donald K. Price , Anne Xuéreb , Jean-François Martin
European Journal of Entomology, 2015, 112, pp.855-859
Journal articles hal-02631599v1

QDD version 3.1: a user-friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate

Emese Meglécz , Nicolas Pech , André Gilles , Vincent Dubut , Pascal Hingamp
Molecular Ecology Resources, 2014, 14 (6), pp.1302-1313. ⟨10.1111/1755-0998.12271⟩
Journal articles hal-02356473v1
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Cover Cropping Alters the Diet of Arthropods in a Banana Plantation: A Metabarcoding Approach

Grégory Mollot , Pierre-François Duyck , Pierre Lefeuvre , Francoise Lescourret , Jean-François Martin
PLoS ONE, 2014, 9 (4), ⟨10.1371/journal.pone.0093740⟩
Journal articles hal-01189949v1

Discongruence of Mhc and cytochrome b phylogeographical patterns in Myodes glareolus (Rodentia: Cricetidae)

Pierre-Jean Male , Jean-François Martin , Maxime Galan , Valérie Deffontaine , Josef Bryja
Biological Journal of the Linnean Society, 2012, 105 (4), pp.881-899. ⟨10.1111/j.1095-8312.2011.01799.x⟩
Journal articles hal-01506086v1

|SE|S|AM|E| Barcode: NGS-oriented software for amplicon characterization - application to species and environmental barcoding

Sylvain Piry , Emmanuel Guivier , A. Realini , Jean-François Martin
Molecular Ecology Resources, 2012, 12 (6), pp.1151-1157. ⟨10.1111/j.1755-0998.2012.03171.x⟩
Journal articles hal-01506133v1
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A shot in the genome: how accurately do shotgun 454 sequences represent a genome?

Emese Meglécz , Nicolas Pech , André Gilles , Jean-François Martin , Michael G Gardner
BMC Research Notes, 2012, 5 (1), pp.259. ⟨10.1186/1756-0500-5-259⟩
Journal articles hal-02356481v1
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Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

André Gilles , Emese Meglécz , Nicolas Pech , Stéphanie Ferreira , Thibaut Malausa
BMC Genomics, 2011, 12 (1), ⟨10.1186/1471-2164-12-245⟩
Journal articles hal-01995051v1
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High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries

Thibaut Malausa , André Gilles , Emese Meglécz , Hélène Blancard , Stéphanie Duthoy
Molecular Ecology Resources, 2011, 11 (4), pp.638-644. ⟨10.1111/j.1755-0998.2011.02992.x⟩
Journal articles hal-01506135v1
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SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing

Emese Meglécz , Sylvain Piry , Erick Desmarais , Maxime Galan , André Gilles
Bioinformatics, 2011, 27 (2), pp.277-278. ⟨10.1093/bioinformatics/btq641⟩
Journal articles hal-02356496v1
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Cross-species amplification of 41 microsatellites in European cyprinids: A tool for evolutionary, population genetics and hybridization studies

Vincent Dubut , Melthide Sinama , Jean-François Martin , Emese Meglecz , Juliette Fernandez
BMC Research Notes, 2010, 3
Journal articles hal-01933480v1
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Development of 55 novel polymorphic microsatellite loci for the critically endangered L. (Actinopterygii: Perciformes: Percidae) and cross-species amplification in five other percids

Vincent Dubut , Rémi Grenier , Emese Meglécz , Rémi Chappaz , Caroline Costedoat
European Journal of Wildlife Research, 2010, 56 (6), pp.931-938. ⟨10.1007/s10344-010-0421-x⟩
Journal articles hal-00609749v1

Evolution and trans-species polymorphism of MHC class IIbeta genes in cyprinid fish.

Eva Ottová , Andrea Simková , Jean-François Martin , Joëlle Goüy de Bellocq , Milan Gelnar
Fish and Shellfish Immunology, 2005, 18 (3), pp.199-222. ⟨10.1016/j.fsi.2004.07.004⟩
Journal articles hal-00104518v1

Host range of Ceutorhynchus assimilis (Coleoptera: Curculionidae), a candidate for biological control of Lepidium draba (Brassicaceae) in the USA

Boris Fumanal , Jean-François Martin , Rouhollah Sobhian , Arnaud Blanchet , Marie-Claude Bon
Biological Control, 2004, 30 (3), pp.598-607. ⟨10.1016/j.biocontrol.2004.03.001⟩
Journal articles hal-03091849v1

Unveiling the diet of predatory mites through DNA metabarcoding—can abiotic factors affect prey detectability?

Isis Carolina S. de Oliveira , Jean-François Martin , Marie-Stéphane Tixier , Debora Pires Paula , Denise Navia
XVI International Congress of Acarology, Dec 2022, Auckland, New Zealand. ⟨10.11646/zoosymposia.22.1.56⟩
Conference papers hal-04225469v1

Unveiling the diet of predatory mites through DNA metabarcoding

D. Navia , Marie-Stéphane M.-S. Tixier , F. Ferragut , Jean-François Martin
IOBC Vienna 2019 Working Group "Integrated Control of Plant-Feeding Mites", Nov 2019, Vienna, Austria
Conference papers hal-02790082v1

Molecular analysis of ecological interactions for optimizing biocontrol prospection of the invasive weed Sonchus oleraceus L. (Asteraceae)

Mélodie Ollivier , Vincent Lesieur , M. Jourdan , T. Thomann , S. Raghu
21. Australasian Weeds Conference, Sep 2018, Sydney, Australia
Conference papers hal-02787832v1

Molecular analysis of ecological interactions for optimizing biocontrol prospection of the invasive weed Sonchus oleraceus L. (Asteraceae)

Mélodie Ollivier , Vincent Lesieur , M. Jourdan , T. Thomann , Sathyamurthy Raghu
15. International Symposium on Biological Control of Weed, European Station of the Commonwealth Institute of Biological Control., Aug 2018, Engelberg, Switzerland
Conference papers hal-02735146v1

Biological control of Sonchus oleraceus: what is known, what is new and what is still missing?

Vincent Lesieur , T. Thomann , M. Jourdan , Mélodie Ollivier , A. Sheppard
21. Australasian Weeds Conference, Sep 2017, Sydney, Australia
Conference papers hal-02787833v1

Metabarcoding for rapidly identifying Phytoseiidae predatory mite species

Marie-Stéphane M.-S. Tixier , Jean-François Martin
IOBC congress Chania Working Group "Integrated Control of Plant-Feeding Mites", Sep 2017, Chania, Greece
Conference papers hal-02785745v1

Rôle des parasites dans le succès d’invasion : approche corrélative sur deux communautés parasitaires dans le contexte de l’invasion de Mus musculus domesticus au Sénégal

Christophe Amidi Diagne , Lucie Tamisier , Khalilou Ba , Nathalie Charbonnel , Jean-Francois J.-F. Cosson
12th African Small mammals Symposium, Apr 2015, Mantasoa, Madagascar
Conference papers hal-02800359v1

Variability, structure and selection of MHCIIB genes in Chondrostoma toxostoma and Chondrostoma nasus in hybrid zones

Civáňová K , Vetešníková A , A. Simkova , C Costedoat , Gilles André
XIV European Congres of Ichthyology, 2012, Liege, Belgium
Conference papers hal-03533423v1
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Evolutionary biology as a tool towards a more customized biological control strategy of weeds: Lepidium draba as a case study

Boris Fumanal , Jean-François Martin , Sobhian Rouhollah , John Gaskin , Marie-Claude Bon
Conference papers hal-03104861v1

Déchiffrer l'histoire évolutive en utilisant des approches multiples- Implications pour la conservation du blageon, Leuciscus souffia souffia (Téléostei : Cyprinidae)

Marie-Dominique Salducci , Jean-François Martin , Nicolas Pech , Remi Chappaz , C Costedoat
Journées Francophones de Conservation de la Biodiversité, Apr 2003, Villeurbanne, France
Conference papers hal-03533468v1

Etude en condition d'infections expérimentales de l'évolution intra-hôte d'une souche sauvage française du virus Puumala

Caroline Tatard , Maxime Galan , Jean-François Martin , Sarah Madrières , S. Murri
21. Journées Francophones de Virologie, Mar 2019, Lyon, France. 1 p., 2019
Conference poster hal-02787268v1

A beautiful flower with a bitter taste, Allium triquetrum L., angled onion: a new biological control program

Vincent Lesieur , T. Thomann , M. Jourdan , Mélodie Ollivier , A. Sheppard
15. International Symposium on Biological Control of Weed (ISBCW 2018), Aug 2018, Engelberg, Switzerland. , 2018
Conference poster hal-02735161v1

Biological control of Sonchus oleraceus: what is known, what is new and what is still missing?

Vincent Lesieur , T. Thomann , M. Jourdan , Mélodie Ollivier , A. Sheppard
15. International Symposium on Biological Control of Weed (ISBCW 2018), Aug 2018, Engelberg, Switzerland. , 2018
Conference poster hal-02787796v1

Biological control of common sowthistle: what is known, what is new and what is still missing?

Vincent Lesieur , T. Thomann , M. Jourdan , Mélodie Ollivier , A. Sheppard
15. International Symposium on Biological Control of Weed (ISBCW 2018), Aug 2018, Engelberg, Switzerland. , 197 p., 2018, XV International Symposium on Biological Control of Weeds : Abstracts of talks and posters
Conference poster hal-02735205v1

Étude de la compatibilité génomique entre deux espèces de cyprinidés et son implication dans la réorganisation du transcriptome chez les hybrides

Florence Petit , Arnaud Ungaro , Jean-François Martin , Morgane Ardisson , Bernard Barascud
6. Rencontres de l'Ichtyologie en France, Mar 2015, Paris, France. 2015, RIF 2015
Conference poster hal-02743393v1

The evolutionary biology of Leuciscus souffia souffia, a french endemic cyprinidae : implication for its conservation

Marie-Dominique Salducci , Jean-François Martin , Nicolas Pech , Remi Chappaz , C Costedoat
VIIth Evolutionary Biology Meeting, Jun 2003, Marseille, France
Conference poster hal-03535710v1