Jean-Loup Faulon
Présentation
Publications
Publications
Estimating the Learning Capacity of Bacterial Metabolic NetworksAdvances in Intelligent Data Analysis XXIII. IDA 2025, May 2025, Konstanz, Germany, Germany. pp.28-40, ⟨10.1007/978-3-031-91398-3_3⟩ |
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Information processing circuits in cell-free systems: beyond gene expression regulationInternational Conference on Engineering Synthetic Cells and Organelles, May 2023, Minneapolis, MN, USA, United States |
in vitro and in vivo neural computations with metabolismAI, Engineering Biology & Beyond, The University of Edinburgh, Mar 2023, Edinburgh, United Kingdom |
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Coupling retrosynthesis with automated in vitro and in vivo metabolic pathway engineeringBIOTRANS-2023, CBSO (Club Biocatalysis in Organic Synthesis), Jun 2023, La Rochelle, France |
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Galaxy-SynBioCAD — An Automated Pipeline for Synthetic Biology Design and EngineeringGlobal BioFoundries Alliance Meeting 2023 (GBA2023), Sep 2023, Copenaghen, Denmark |
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Automated in vitro and in vivo metabolic pathway engineeringESAB WEBINAR - Biocatalysis meets Informatics, ESAB - European Society of Applied Biocatalysis, Aug 2023, Virtual, France |
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Hybrid models for neural computations with metabolismUniversity of Stuttgart seminatr series, University of Stuttgart, Jun 2022, Stuttgart, Germany |
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Hybrid models enabling neural computation with metabolic networksSystem Biology Seminar Series, University of Stuttgart, Jun 2022, Stuttgart, Germany |
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Automated Pipeline for Synthetic Biology Design and EngineeringJBEI seminar series, JBEI (DOE), Oct 2022, Emeryville, CA, United States |
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Artificial Metabolic NetworkAAAI Spring Symposium: Artificial Intelligence for Synthetic Biology, AAAI, Mar 2022, Stanford University (CA), United States |
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Artificial Metabolic Network for neural computation with metabolismAI-4-SynBio UK, Imperial College, Mar 2022, London, United Kingdom |
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Artificial Metabolic NetworkSéminaire Centre de Biologie Structural, Centre de Biologie Structural, May 2022, Montpellier, France |
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Synthetic Biology: past, present and futureBioket-2021, Bioket, Mar 2021, Lille, France |
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Biocomputing with EnzymeFaulon JL, “Biocomputing with Enzyme”, International symposium on High Throughput Catalyst Design, HTCD-2021, HTCD, University of Lille, Jun 2021, Lille, France |
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The Galaxy-SynBioCAD portal: tools and workflows for synthetic biology and metabolic engineeringJournées du PEPI IBIS 2021, Nov 2021, Toulouse, France |
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Biological Design and Engineering By and For machine LearningEngineering, Evolution & Design (SEED), AICHE, Jun 2021, Vitual, United States |
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Automated Workflows for Synthetic Biology and metabolic Engineering: the Galaxy-SynBioCAD PortalMicrobial Cell Factories Webinar Series, University of Manchester, Mar 2021, Manchester, United Kingdom |
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AI and Synthetic BiologyInvited Lecture EPFL, EPFL, Feb 2020, Lausane, Switzerland |
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Intelligence Artificielle et BioSynthèseSéance Substances Naturelle, Académie nationale de Pharmacie, May 2020, Paris, France |
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Enzyme for BiocomputingSymposium « Chemistry goes Green », SANOFI, Sep 2020, Montpellier, France |
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Design Automation Workflows for Synthetic Biology and Metabolic Engineering: The Galaxy SynBioCAD portalIWBDA, 12th International Workshop on Bio-Design Automation, Bio-Design Automation Consortium (BDAC), Aug 2020, Worcester, MA, United States |
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Machine Learning for and by Synthetic BiologyBeilstein Bozen Symposium, Beilstein Institute, Sep 2020, Rudesheime, Germany |
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Machine Learning in Synthetic Biology2nd Annual Synthetic Biology Congress, EBRC, Nov 2019, London, United Kingdom |
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Interfacing Machine Learning with Biological SystemsEMBO workshop “Creating is Under-standing: Synthetic Biology Masters Complexity”, EMBO, Sep 2019, Heidelberg, Germany |
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A large-scale exploration of cell-free compositions to maximize protein production using active learningCell Free Systems Conference, Dec 2019, Boston (MA), United States |
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Keynote lecture #2: Retrosynthesis and computer-aided design of metabolic pathwaysEMBO course Synthetic Biology in Action: Bridging Natural/NonNatural, EMBO, Sep 2019, Heidelberg, Germany |
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Design-Build-Test-Learn Paradigm in Synthetic BiologyJOBIM conference, JOBIM, Jul 2019, Nante, France |
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Metabolic PerceptronSynthetic Biology UK 2019, Dec 2019, Warwick, UK, United Kingdom |
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Metabolic Perceptrons for Neural Computing in Cell Free SystemsAIChE Cell Free Systems Conference, American Institute of Chemical Engineers (AIChE), Dec 2019, Boston (MA), United States |
OptBioDes: an optimal design for the synbio toolchainIWBDA 11th In-ternational Workshop on Bio-Design Automation, Bio-Design Automation Consortium (BDAC), Jul 2019, Cambridge, UK, United Kingdom |
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A large-scale exploration of cell-free compositions to maximize protein production using reinforcement learningEMBO workshop “Creating is Understand-ing: Synthetic Biology Masters Complexity, EMBO, Sep 2019, Heildelberg, Germany |
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Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensorsCongrés GDR BioSynSys, GDG BioSynSys, Oct 2018, Toulouse, France |
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Microbial Biotechnology12th CeBiTec-Symposium, CeBiTec, Mar 2018, Bielefeld, Germany |
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Standard in Synthetic BiologyEU-US High Level Expert workshop on Biotechnology, Apr 2018, Bruxelles, Belgium |
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Metabolic engineering for Natural ProductsIUPHAR Natural Products Meeting, IUPHAR, Apr 2018, Paris, France |
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The Microbial Biotechnology ELIXIR communityAthens ELIXIR workshop, ELIXIR, Sep 2018, Athens, Greece |
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Retrosynthèse en BiologieColloque Chimie et biologie de synthèse : les applications, Maison de la Chimie, Feb 2018, Paris, France |
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Retrosynthesis to design and engineer metabolic pathways BiologyCongress SCF 2018, SCF, Jul 2018, Montpellier, France |
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Cell-Free Biosensors and AI integrationCell-Free Gene Expression, 2433, Springer US, pp.303-323, 2022, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1998-8_19⟩ |
Synthetic Biology at the Hand of Cell-Free SystemsAdvances in Synthetic Biology, Springer Singapore, pp. 275-288, 2020, ⟨10.1007/978-981-15-0081-7_16⟩ |
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Enzyme discovery: Enzyme selection and pathway designMethods in Enzymology, 608, Elsevier Academic Press Inc., pp.25, 2018, Methods in Enzymology, 978-0-12-815148-8. ⟨10.1016/bs.mie.2018.04.005⟩ |
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Extended metabolic space modelingSynthetic metabolic pathways, 1671, Springer, 394 p., 2017, Methods in Molecular Biology, 978-1-4939-7295-1 |
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Retrosynthetic design of heterologous pathways 2013Systems Metabolic Engineering, 985, Humana Press, 2013, Methods in Molecular Biology, 978-1-62703-298-8. ⟨10.1007/978-1-62703-299-5_9⟩ |
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Retrosynthetic design of heterologous pathwaysSystems metabolic engineering, 985, Springer, 474 p., 2013, Methods in Molecular Biology, 978-1-62703-298-8 |
Graphs: flexible representations of molecular structures and biological networksComputational Approaches in Cheminformatics and Bioinformatics, John Wiley and sons, 292 p., 2011, 978-0-470-38441-1. ⟨10.1002/9781118131411.ch6⟩ |
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RetroRules 2026: multi‑dataset combining chemistry and biochemistry for reaction templates2025 |
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Cell-free genome-wide transcriptomics through machine learning optimization2025 |
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dAMN: a genome scale neural-mechanistic hybrid model to predict bacterial growth dynamics2025 |
Microbial computing: review and perspectives2025 |
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Living bacterial reservoir computers for information processing and sensing2026 |
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Artificial Metabolic Networks: enabling neural computation with metabolic networks2022 |
EMBL-EBI Services ReviewEMBL-EBI. 2023 |
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IBISBA-FR : Une infrastructure en soutien au développement de la biotechnologie industrielle comme technologie clef pour l’industrie du futur et pour accompagner la bioéconomie et l’économie circulaireINRAE; CNRS; CEA; INSA Toulouse; Université de nantes; Aix-Marseille Université (AMU). 2021 |
Synthèse du livre blanc des sciences de la vie du département des sciences de la vie de l'université Paris Saclay[0] 2015 |