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Jean-Pierre Flandrois

129
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Current Research ---------------- Two flagship projects --------------------- [BIBI-DB](https://umr5558-bibiserv.univ-lyon1.fr/lebibi/lebibi.cgi) BIBI-DB is a taxonomy-hierarchized set of databasesand oriented to facilitate the phylogeny of *Archaea* and *Bacteria*. Thanks to a web interface it allows the phylogenetic placement of unknown nucleic acid sequences (this may precede identification). [RiboDB](https://umr5558-bibiserv.univ-lyon1.fr/riboDB/ribodb.cgi) is a ribosomal protein database of Bacteria and Archaea freely searchable via the Internet. RiboDB construction process is versatile and can be used to construct proteins databases from freshly assembled and annotated genomes. Applications ------------ [leBIBI](https://umr5558-bibiserv.univ-lyon1.fr/lebibi/lebibi.cgi) is a web application used worldwide to identify bacteria in hospital laboratories, industrial, environmental. The [leBIBI](https://umr5558-bibiserv.univ-lyon1.fr/lebibi/lebibi.cgi) and [RiboDB](https://umr5558-bibiserv.univ-lyon1.fr/riboDB/ribodb.cgi) databases are useful to classify more rigorously the Bacteria and Archaea and may highlight new pathogen species. Their use helps to explain the evolution of the microbial world. [RiboDB](https://umr5558-bibiserv.univ-lyon1.fr/riboDB/ribodb.cgi) will allow to improve the quality of diagnosis of infections.

Publications

Climate conditions and dietary practices during the Second Iron Age studied through the multi-isotope analysis of bones and teeth from individuals of Thézy-Glimont, Picardie, France

Thibault Clauzel , Pascale Richardin , Jannick Ricard , Yves Le Béchennec , Romain Amiot
Archaeological and Anthropological Sciences, 2022, 14 (4), pp.61. ⟨10.1007/s12520-022-01534-1⟩
Journal articles hal-03620017v1
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A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea

Monique Aouad , Jean-Pierre Flandrois , Frédéric Jauffrit , Manolo Gouy , Simonetta Gribaldo
BMC Ecology and Evolution, 2022, 22 (1), pp.1-12. ⟨10.1186/s12862-021-01952-0⟩
Journal articles hal-03514913v1

Hydrogen isotope measurements of bone and dental tissues from archaeological human and animal samples and their use as climatic and diet proxies

Thibault Clauzel , Pascale Richardin , Jannick Ricard , Yves Le Béchennec , Romain Amiot
Journal of Archaeological Science, 2022, 147, pp.105676. ⟨10.1016/j.jas.2022.105676⟩
Journal articles hal-03833280v1
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A Comprehensive Evolutionary Scenario of Cell Division and Associated Processes in the Firmicutes

Pierre Garcia , Wandrille Duchemin , Jean-Pierre Flandrois , Simonetta Gribaldo , Christophe Grangeasse
Molecular Biology and Evolution, 2021, 38 (6), pp.2396-2412. ⟨10.1093/molbev/msab034⟩
Journal articles hal-03293358v1
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Climatic change and diet of the pre-Hispanic population of Gran Canaria (Canary Archipelago, Spain) during the Medieval Warm Period and Little Ice Age

Christophe Lécuyer , Jean Goedert , Johanne Klee , Thibault Clauzel , Pascale Richardin
Journal of Archaeological Science, 2021, 128, pp.105336. ⟨10.1016/j.jas.2021.105336⟩
Journal articles hal-03293366v1
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Isotopic systematics point to wild origin of mummified birds in Ancient Egypt

Marie Linglin , Romain Amiot , Pascale Richardin , Stéphanie Porcier , Ingrid Antheaume
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-72326-7⟩
Journal articles hal-02991805v1

A Sample-to-Report Solution for Taxonomic Identification of Cultured Bacteria in the Clinical Setting Based on Nanopore Sequencing

Stefan Moritz Neuenschwander , Miguel Angel Terrazos Miani , Heiko Amlang , Carmen Perroulaz , Pascal Bittel
Journal of Clinical Microbiology, 2020, 58 (6), ⟨10.1128/JCM.00060-20⟩
Journal articles hal-03105483v1

Metapopulation ecology links antibiotic resistance, consumption, and patient transfers in a network of hospital wards

Julie Teresa Shapiro , Gilles Leboucher , Anne-Florence Myard-Dury , Pascale Girardo , Anatole Luzzati
Journal articles hal-03105766v1
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δ18O and δ13C of diagenetic land snail shells from the Pliocene (Zanclean) of Lanzarote, Canary Archipelago: Do they still record some climatic parameters?

Christophe Lécuyer , Antonio Sanchez Marco , Alejandro Lomoschitz , Juan-Francisco Betancort , François Fourel
Journal of African Earth Sciences, 2020, 162, pp.103702. ⟨10.1016/j.jafrearsci.2019.103702⟩
Journal articles hal-02991811v1

Dickeya poaceiphila sp. nov., a plant-pathogenic bacterium isolated from sugar cane (Saccharum officinarum)

Nicole Hugouvieux‐cotte‐pattat , Celine Brochier-Armanet , Jean-Pierre Flandrois , Sylvie Reverchon
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (8), pp.4508-4514. ⟨10.1099/ijsem.0.004306⟩
Journal articles hal-03103453v1
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The Gauls experienced the Roman Warm Period: Oxygen isotope study of the Gallic site of Thézy-Glimont, Picardie, France

Thibault Clauzel , Pascale Richardin , Jannick Ricard , Yves Le Béchennec , Romain Amiot
Journal of Archaeological Science: Reports, 2020, 34, pp.102595. ⟨10.1016/j.jasrep.2020.102595⟩
Journal articles hal-02998511v1
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The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity

Alexandre Duprey , Najwa Taïb , Simon Leonard , Tiffany Garin , Jean-Pierre Flandrois
Environmental Microbiology, 2019, 21 (8), pp.2809-2835. ⟨10.1111/1462-2920.14627⟩
Journal articles hal-02099020v1
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Taxonomic assignment of uncultured prokaryotes with long range PCR targeting the spectinomycin operon

Jean-Pierre Flandrois , Céline Brochier-Armanet , Jérôme Briolay , Danis Abrouk , Guillaume P Schwob
Research in Microbiology, 2019, 170 (6-7), pp.280-287. ⟨10.1016/j.resmic.2019.06.005⟩
Journal articles hal-02327832v1
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Highly Reduced Genome of the New Species Mycobacterium uberis, the Causative Agent of Nodular Thelitis and Tuberculoid Scrotitis in Livestock and a Close Relative of the Leprosy Bacilli

Andrej Benjak , Charlotte Avanzi , Yvonne Benito , Franck Breysse , Christophe Chartier
MSphere, 2018, 3 (5), pp.e00405-18. ⟨10.1128/mSphere.00405-18⟩
Journal articles hal-02332532v1

Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France

Maxime Barbier , Oana Dumitrescu , Catherine Pichat , Gérard Carret , Anne-Sophie Ronnaux-Baron
Scientific Reports, 2018, 8 (1), pp.5855. ⟨10.1038/s41598-018-24034-6⟩
Journal articles hal-01908989v1

Tsunami sedimentary deposits of Crete records climate during the ‘Minoan Warming Period’ (≈3350 yr BP)

Christophe Lécuyer , François Atrops , Romain Amiot , Delphine Angst , Valérie Daux
The Holocene, 2018, ⟨10.1177/0959683617752840⟩
Journal articles hal-01806805v1

Strain-specific estimation of epidemic success provides insights into the transmission dynamics of tuberculosis

Jean-Philippe Rasigade , Maxime Barbier , Oana Dumitrescu , Catherine Pichat , Gérard Carret
Scientific Reports, 2017, 7, pp.45326. ⟨10.1038/srep45326⟩
Journal articles hal-01911199v1

Record of Nile seasonality in Nubian neonates.

Céline Martin , Bruno Maureille , Romain Amiot , Alexandra Touzeau , Aurélien Royer
Isotopes in Environmental and Health Studies, 2017, 53 (3), pp.223-242. ⟨10.1080/10256016.2016.1229667⟩
Journal articles hal-01495855v1

δ 18 O-derived incubation temperatures of oviraptorosaur eggs

Romain Amiot , Xu Wang , Shuo Wang , Christophe Lécuyer , Jean-Michel Mazin
Palaeontology, 2017, 60 (5), pp.633-647. ⟨10.1111/pala.12311⟩
Journal articles hal-02994695v1

d18O-Derived incubation temperatures of oviraptorosaur eggs.

Romain Amiot , Xu Wang , Shuo Wang , Christophe Lécuyer , Jean-Michel Mazin
Palaeontology, 2017, pp.1-15. ⟨10.1111/pala.12311⟩
Journal articles hal-01561556v1

Oxygen isotope fractionation between bird eggshell calcite and body water: application to fossil eggs from Lanzarote (Canary Islands)

Nicolas Lazzerini , Christophe Lécuyer , Romain Amiot , Delphine Angst , Eric Buffetaut
The Science of Nature Naturwissenschaften, 2016, 103 (9-10), ⟨10.1007/s00114-016-1404-x⟩
Journal articles hal-02994717v1

Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France

Catherine Pichat , David Couvin , Gérard Carret , Isabelle Frédénucci , Véronique Jacomo
PLoS ONE, 2016, 11 (4), pp.e0153580. ⟨10.1371/journal.pone.0153580⟩
Journal articles hal-01910925v1

RiboDB database: a comprehensive resource for prokaryotic systematics

Frédéric Jauffrit , Simon Penel , Stéphane Delmotte , Carine Rey , Damien M de Vienne
Molecular Biology and Evolution, 2016, 33 (8), pp.2170--2172. ⟨10.1093/molbev/msw088⟩
Journal articles hal-01800061v1

A Toolbox for Nonlinear Regression in R: The Package nistools

F. Baty , C. Ritz , Sandrine Charles , M. Brutsche , Jean-Pierre Flandrois
Journal of Statistical Software, 2015, 66, pp.1-21
Journal articles hal-02044944v1
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leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences

Jean-Pierre Flandrois , G. Perrière , Manolo Gouy
BMC Bioinformatics, 2015, 16 (1), pp.251. ⟨10.1186/s12859-015-0692-z⟩
Journal articles hal-02044751v1

Nontuberculous Mycobacteria: An Underestimated Cause of Bioprosthetic Valve Infective Endocarditis

C. Bouchiat , J. Saison , S. Boisset , Jean-Pierre Flandrois , B. Issartel
Open Forum Infectious Diseases, 2015, 2 (2), ⟨10.1093/ofid/ofv047⟩
Journal articles hal-02044973v1

Assessment of polycarbonate filter in a molecular analytical system for the microbiological quality monitoring of recycled waters onboard ISS

Anne-Laure Bechy-Loizeau , Jean-Pierre Flandrois , Hafid Abaibou
Life Sciences in Space Research, 2015, 6, pp.29-35. ⟨10.1016/j.lssr.2015.06.002⟩
Journal articles hal-02332536v1
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MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis.

Jean-Pierre Flandrois , Gérard Lina , Oana Dumitrescu
BMC Bioinformatics, 2014, 15 (1), pp.107. ⟨10.1186/1471-2105-15-107⟩
Journal articles inserm-00982132v1

Mycobacterium Species Related to M. leprae and M. lepromatosis from Cows with Bovine Nodular Thelitis

D. Pin , V. Guerin-Faublee , V. Garreau , F. Breysse , Oana Dumitrescu
Emerging Infectious Diseases, 2014, 20, pp.2111-4. ⟨10.3201/eid2012.140184⟩
Journal articles hal-02045107v1

Optimization of the reactional medium and a food impact study for a colorimetric in situ Salmonella spp. detection method

L. Morand , D. Michel , Jean-Pierre Flandrois , T. Junillon , D. Mosticon
International Journal of Food Microbiology, 2014, 181, pp.48-52
Journal articles hal-02046798v1

Enhanced tetrazolium violet reduction of Salmonella spp. by magnesium addition to the culture media

T. Junillon , L. Morand , Jean-Pierre Flandrois
Food Microbiology, 2014, 42, pp.132-135
Journal articles hal-02046799v1

Diet of ancient Egyptians inferred from stable isotope systematics

Alexandra Touzeau , Romain Amiot , Janne Blichert-Toft , Jean-Pierre Flandrois , François Fourel
Journal of Archaeological Science, 2014, 46, pp.114-124. ⟨10.1016/j.jas.2014.03.005⟩
Journal articles hal-02994728v1

Candida albicans and non- Candida albicans fungemia in an institutional hospital during a decade

Jean-Pierre Flandrois , Laurence Parmeland , Mathieu Gazon , Claude Guérin , Laurent Argaud
Medical Mycology, 2013, 51 (1), pp.33-37. ⟨10.3109/13693786.2012.686673⟩
Journal articles hal-02334577v1

Diminution of 2,3,5-triphenyltetrazolium chloride toxicity on Listeria monocytogenes growth by iron source addition to the culture medium

T. Junillon , Jp. Flandrois
Food Microbiology, 2013, 38, pp.1--5. ⟨10.1016/j.fm.2013.07.005⟩
Journal articles hal-02281566v1

Egyptian mummies record increasing aridity in the Nile valley from 5500 to 1500yr before present

Alexandra Touzeau , Janne Blichert-Toft , Romain Amiot , François Fourel , François Martineau
Earth and Planetary Science Letters, 2013, 375, pp.92-100. ⟨10.1016/j.epsl.2013.05.014⟩
Journal articles hal-02110386v1

Mycobacterium bourgelatii sp. nov., a rapidly growing, non-chromogenic species isolated from the lymph nodes of cattle.

Véronique Guérin-Faublée , Jean-Pierre Flandrois , Catherine Pichat , Maria Laura Boschiroli , Brigitte Lamy
International Journal of Systematic and Evolutionary Microbiology, 2013, 63 (Pt 12), pp.4669-74. ⟨10.1099/ijs.0.051979-0⟩
Journal articles hal-01017330v1

Simplified detection of food-borne pathogens: An in situ high affinity capture and staining concept

T. Junillon , A. Vimont , D. Mosticone , B. Mallen , F. Baril
Journal of Microbiological Methods, 2012, 91, pp.501--505. ⟨10.1016/j.mimet.2012.09.015⟩
Journal articles hal-02296823v1

Species-driven interpretation guidelines in case of a single-sampling strategy for blood culture

D. Leyssene , S. Gardes , P. Vilquin , Jp. Flandrois , Gérard Carret
European Journal of Clinical Microbiology and Infectious Diseases, 2011, 30, pp.1537-1541. ⟨10.1007/s10096-011-1257-3⟩
Journal articles hal-02297650v1

A pharmacologically based multiscale mathematical model of angiogenesis and its use in investigating the efficacy of a new cancer treatment strategy.

Frédérique Billy , Benjamin Ribba , Olivier Saut , Hélène Morre-Trouilhet , Thierry Colin
Journal of Theoretical Biology, 2009, 260 (4), pp.545-62. ⟨10.1016/j.jtbi.2009.06.026⟩
Journal articles inria-00440447v1

A seven-gene multilocus genus-wide approach to the phylogeny of mycobacteria using supertrees

S. Mignard , Jean-Pierre Flandrois
International Journal of Systematic and Evolutionary Microbiology, 2008, 58(part 6), pp.1432-1441
Journal articles hal-00428262v1

Identification of Mycobacterium using the EF-Tu encoding (tuf) gene and the tmRNA encoding (ssrA) gene

S. Mignard , J.-P. Flandrois
Journal of Medical Microbiology, 2007, 56 (8), pp.1033-1041. ⟨10.1099/jmm.0.47105-0⟩
Journal articles hal-02332574v1

Rapid identification of Enterobacteriaceae by sequencing DNA gyrase subunit B encoding gene

J. Delmas , F. Breysse , G. Devulder , Jean-Pierre Flandrois , M. Chomarat
Diagnostic Microbiology and Infectious Disease, 2006, 55, pp.263-268
Journal articles hal-00427939v1

16S rRNA sequencing in routine bacterial identification : A 30-month experiment

S. Mignard , Jean-Pierre Flandrois
Journal of Microbiological Methods, 2006, 67, pp.574-581
Journal articles hal-00427881v1

Use of PCR-Restriction Enzyme Pattern Analysis and Sequencing Database for hsp65 Gene-Based Identification of Nocardia Species

V. Rodriguez-Nava , A. Couble , G. Devulder , Jean-Pierre Flandrois , P. Boiron
Journal of Clinical Microbiology, 2006, 44 (2), pp.536-546. ⟨10.1128/JCM.44.2.536-546.2006⟩
Journal articles hal-00428029v1

Mycobacterium bovis Infection

S. Mignard , Jean-Pierre Flandrois
Journal of Medical Microbiology, 2006, 56, pp.1033-1041
Journal articles hal-00428005v1

A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model

G. Devulder , M. Perouse de Montclos , Jean-Pierre Flandrois
International Journal of Systematic and Evolutionary Microbiology, 2005, 55, pp.293-302
Journal articles hal-00427738v1

[From prevalence to predictive values: considerations on the antimicrobial susceptibility testing dealing with change of susceptibility rates].

Jean-Pierre Flandrois , B Lamy , G. Carret , M Delignette-Muller
Annales de Biologie Clinique, 2005, 63 (5), pp.493-502
Journal articles hal-02332581v1

De la prévalence aux valeurs prédictives: L`antibiogramme face à l`évolution de la résistance aux antibiotiques

B. Lamy , G. Carret , Jean-Pierre Flandrois , Marie Laure Delignette-Muller
Annales de Biologie Clinique, 2005, 63, pp.493-502
Journal articles hal-00427775v1

How does susceptibility prevalence impact on the performance of disk diffusion susceptibility testing?

B. Lamy , G. Carret , Jean-Pierre Flandrois , Marie Laure Delignette-Muller
Diagnostic Microbiology and Infectious Disease, 2004, 49, pp.131-139
Journal articles hal-00427611v1

Quelques problèmes statistiques rencontrés dans l`estimation de la température minimale de croissance de Listeria monocytogenes

S. Charles-Bajard , Jean-Pierre Flandrois , R. Tomassone
Revue de Statistique Appliquée, 2003, LI, pp.59-71
Journal articles hal-00427493v1

BIBI a bioinformatics bacterial identification tool

G. Devulder , G. Perrière , F. Baty , Jean-Pierre Flandrois
Journal of Clinical Microbiology, 2003, 41, pp.1785-1787
Journal articles hal-00427401v1

A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

A. Dechesne , C. Pallud , D. Debouzie , J. P. Flandrois , T. M. Vogel
Soil Biology and Biochemistry, 2003, 35 (12), pp.1537-1546. ⟨10.1016/S0038-0717(03)00243-8⟩
Journal articles hal-02573523v1

A method to study the microscale 3-D spatial distribution of Bacteria in soil.

A. Dechesne , C. Pallud , D. Debouzie , Jean-Pierre Flandrois , J.P. Gaudet
Mycological Research, 2003, 107, pp.1221-1230
Journal articles hal-00427331v1

What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia

B. Lamy , Pascal Roy , G. Carret , Jean-Pierre Flandrois , Marie Laure Delignette-Muller
Clinical Infectious Diseases, 2002, 35 (7), pp.842-850. ⟨10.1086/342383⟩
Journal articles hal-00427281v1

Modeling the Lag Time of Listeria monocytogenes from Viable Count Enumeration and Optical Density Data

F. Baty , Jean-Pierre Flandrois , Marie Laure Delignette-Muller
Applied and Environmental Microbiology, 2002, 68, pp.5816-5825
Journal articles hal-00427255v1

Modelling the competitive growth of Listeria monocytogenes and Listeria innocua in enrichment broths

Marie Cornu , Martin Kalmokoff , Jean-Pierre Flandrois
International Journal of Food Microbiology, 2002, 73 (2-3), pp.261-274. ⟨10.1016/S0168-1605(01)00658-4⟩
Journal articles hal-02332587v1

Fitness and competitive growth advantage of new gentamicin-susceptible MRSA clones spreading in French hospitals

Jean-Pierre Flandrois , F. Laurent
Journal of Antimicrobial Chemotherapy, 2001, 47 (3), pp.277-283. ⟨10.1093/jac/47.3.277⟩
Journal articles hal-02332592v1

A mathematical model describing the thermal virus inactivation

C. Noel , Sandrine Charles , A. Francon , Jean-Pierre Flandrois
Vaccine, 2001, 19, pp.3575-3582
Journal articles hal-00427188v1

Spatial Modeling of Nitrifier Microhabitats in Soil

G. Grundmann , A. Dechesne , F. Bartoli , Jean-Pierre Flandrois , J. Chassé
Soil Science Society of America Journal, 2001, 65 (6), pp.1709. ⟨10.2136/sssaj2001.1709⟩
Journal articles hal-02332596v1

A model describing the relationship between regrowth lag time and mild temperature increase for Listeria monocytogenes

S. Breand , G. Fardel , Jean-Pierre Flandrois , L. Rosso , R. Tomassone
International Journal of Food Microbiology, 1999, 46, pp.251-261
Journal articles hal-00428438v1

Characterization of Unexpected Growth of Escherichia coli O157:H7 by Modeling

M. Cornu , Marie Laure Delignette-Muller , Jean-Pierre Flandrois
Applied and Environmental Microbiology, 1999, 65, pp.5322-5327
Journal articles hal-00428469v1

Saccharomyces boulardii Fungemia in a Patient Receiving Ultra‐levure Therapy

Jean-Pierre Flandrois , I. Fredenucci , M. Chomarat , C. Boucaud
Clinical Infectious Diseases, 1998, 27 (1), pp.222-223. ⟨10.1086/517685⟩
Journal articles hal-02334575v1

Model of the influence of time and mild temperature on Listeria monocytogenes nonlinear survival curves

S. Breand , G. Fardel , Jean-Pierre Flandrois , L. Rosso , R. Tomassone
International Journal of Food Microbiology, 1998, 40, pp.185-195
Journal articles hal-00428479v1

Influence of atmospheric conditions during incubation on the susceptibilities of Streptococcus pneumoniae isolates to five beta- lactam antibiotics

M. Chomarat , L. Chollet , M. Peyret , Jean-Pierre Flandrois
Journal of Antimicrobial Chemotherapy, 1997, 40 (4), pp.599-601. ⟨10.1093/jac/40.4.599⟩
Journal articles hal-02332606v1

Reappraisal of the effect of temperature on the growth kinetics of Aeromonas salmonicida

V. Guérin-Faublée , Sandrine Charles , M. Chomarat , Jean-Pierre Flandrois
Letters in Applied Microbiology, 1997, 25, pp.363-366
Journal articles hal-00434985v1

A model describing the relationship between lag time and mild temperature increase duration

S. Breand , G. Fardel , Jean-Pierre Flandrois , L. Rosso , R. Tomassone
International Journal of Food Microbiology, 1997, 38, pp.157-167
Journal articles hal-00434965v1

A Descriptive Model for the Kinetics of a Homogeneous Fluorometric Immunoassay

Emmanuel Zuber , Laurent Rosso , Bruno Darbouret , Françoise Socquet , Gérard Mathis
Journal of Immunoassay and Immunochemistry, 1997, 18 (1), pp.21-47. ⟨10.1080/01971529708005803⟩
Journal articles hal-02332602v1

Homogeneous Two-Site Immunometric Assay Kinetics as a Theoretical Tool for Data Analysis

Emmanuel Zuber , Gérard Mathis , Jean-Pierre Flandrois
Analytical Biochemistry, 1997, 251 (1), pp.79-88. ⟨10.1006/abio.1997.2243⟩
Journal articles hal-02332601v1

Simple relationship between acid dissociation constant and minimal pH for microbial growth in laboratory medium

Jean-Pierre Flandrois , L. Rosso , E. Zuber , C. Pichat
International Journal of Food Microbiology, 1997, 35 (1), pp.75-81. ⟨10.1016/S0168-1605(96)01231-7⟩
Journal articles hal-02332604v1

Application of a modified disc diffusion technique to antimicrobial susceptibility testing of Vibrio anguillarum and Aeromonas salmonicida clinical isolates

V. Guerin-Faublée , Marie Laure Delignette-Muller , M. Vigneulle , Jean-Pierre Flandrois
Veterinary Microbiology, 1996, 51, pp.137-149
Journal articles hal-00435044v1

Differential growth of Listeria monocytogenes at 4 and 8°C: Consequences for the Shelf Life of Chilled Products

L. Rosso , S. Bajard , Jean-Pierre Flandrois , C. Lahellec , J. Fournaud
Journal of Food Protection, 1996, 59 (9), pp.944-949. ⟨10.4315/0362-028X-59.9.944⟩
Journal articles hal-02332607v1
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Use of mathematics and statistics in nutrition modelling

G Ciuperca , R Tomassone , Jp Flandrois
Annales de zootechnie, 1996, 45 (Suppl1), pp.143-152
Journal articles hal-00889615v1

The particular behaviour of Listeria monocytogenes under sub-optimal conditions

S. Bajard , L. Rosso , G. Fardel , Jean-Pierre Flandrois
International Journal of Food Microbiology, 1996, 29, pp.201-211
Journal articles hal-00435025v1

An economic approach to the MIC.

M. Delignette-Muller , Jean-Pierre Flandrois , Catherine Chapuis
Zentralblatt fur Bakteriologie : international journal of medical microbiology, 1996, 284 (1), pp.67-74
Journal articles hal-02332615v1

Evaluation of an expert system linked to a rapid antibiotic susceptibility testing system for the detection of β-lactam resistance phenotypes

Jean-Pierre Flandrois , G. Vedel , M. Peyret , J.P. Gayral , Patrick Millot
Research in Microbiology, 1996, 147 (4), pp.297-309. ⟨10.1016/0923-2508(96)81390-8⟩
Journal articles hal-02332610v1

The effect of incubation temperature and sodium chloride concentration on the growth kinetics of Vibrio anguillarum and Vibrio anguillarum -related organisms

Véronique Guérin-Faublée , L. Rosso , Martine Vigneulle , J.-P. Flandrois
The Journal of applied bacteriology, 1995, 78 (6), pp.621-629. ⟨10.1111/j.1365-2672.1995.tb03108.x⟩
Journal articles hal-02332625v1

Accuracy of microbial growth predictions with square root and polynomial models

Jean-Pierre Flandrois , M. Delignette-Muller
International Journal of Food Microbiology, 1995, 27 (2-3), pp.139-146. ⟨10.1016/0168-1605(94)00158-3⟩
Journal articles hal-02332618v1

Convenient Model To Describe the Combined Effects of Temperature and pH on Microbial Growth

L. Rosso , J.R. Lobry , S. Bajard , Jean-Pierre Flandrois
Applied and Environmental Microbiology, 1995, 61, pp.610-616
Journal articles hal-00698190v1

Relationship between colonial surface and density on agar plate

L. Rosso , Jean-Pierre Flandrois , Catherine Chapuis
The Journal of applied bacteriology, 1995, 79 (5), pp.542-550. ⟨10.1111/j.1365-2672.1995.tb03175.x⟩
Journal articles hal-02332629v1

Olecranon bursitis due toPrototheca wickerhamii, an algal opportunistic pathogen

M. Montclos , G. Chatte , M. Perrin-Fayolle , Jean-Pierre Flandrois
European Journal of Clinical Microbiology and Infectious Diseases, 1995, 14 (6), pp.561-562. ⟨10.1007/bf02113444⟩
Journal articles hal-02332623v1

[Post-antibiotic effect of three aminoglycosides against Klebsiella pneumoniae].

M de Montclos , M. Guinet , Jean-Pierre Flandrois , Catherine Chapuis
Pathologie Biologie, 1994, 42 (5), pp.419-24
Journal articles hal-02332637v1

Mathematical model of the interactions between Micrococcus spp. and Pseudomonas aeruginosa on agar surface

J.-P. Flandrois , Catherine Chapuis
The Journal of applied bacteriology, 1994, 77 (6), pp.727-732. ⟨10.1111/j.1365-2672.1994.tb02826.x⟩
Journal articles hal-02332635v1

An accurate diffusion method for determining bacterial sensitivity to antibiotics

M. Delignette-Muller , Jean-Pierre Flandrois
Journal of Antimicrobial Chemotherapy, 1994, 34 (1), pp.73-81. ⟨10.1093/jac/34.1.73⟩
Journal articles hal-02332634v1
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Actinomyces pyogenes: susceptibility of 103 clinical animal isolates to 22 antimicrobial agents

V Guérin-Faublée , Jp Flandrois , E Broye , F Tupin , Y Richard
Veterinary Research, 1993, 24 (3), pp.251-259
Journal articles hal-00902121v1

An unexpected correlation between cardinal temperatures of microbial growth highlighted by a new model

L. Rosso , J.R. Lobry , Jean-Pierre Flandrois
Journal of Theoretical Biology, 1993, 162, pp.447-463
Journal articles hal-00698186v1

Antimicrobial susceptibility testing of actinomyces pyogenes: Comparison of disk diffusion test and Api ATB Strep system with the Agar dilution method

Véronique Guérin-Faublée , Jean-Pierre Flandrois , Yves Richard
Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1993, 279 (3), pp.377-386. ⟨10.1016/S0934-8840(11)80370-1⟩
Journal articles hal-02332640v1

Mathematical model for comparison of time-killing curves.

F Guerillot , G. Carret , Jean-Pierre Flandrois
Antimicrobial Agents and Chemotherapy, 1993, 37 (8), pp.1685-1689. ⟨10.1128/AAC.37.8.1685⟩
Journal articles hal-02332638v1

A statistical evaluation of the bactericidal effects of ceftibuten in combination with aminoglycosides and ciprofloxacin

F. Guérillot , G. Carret , Jean-Pierre Flandrois
Journal of Antimicrobial Chemotherapy, 1993, 32 (5), pp.685-694. ⟨10.1093/jac/32.5.685⟩
Journal articles hal-02332639v1

Gram-positive infections in neutropenic patients: glycopeptide antibiotic choice

Monique Chomarat , Daniel Espinouse , Jean-Pierre Flandrois
Journal of Antimicrobial Chemotherapy, 1992, 29 (4), pp.462-463. ⟨10.1093/jac/29.4.462⟩
Journal articles hal-02334574v1

Monod's bacterial growth model revisited

J.R. Lobry , Jean-Pierre Flandrois , G. Carret , A. Pavé
Bulletin of Mathematical Biology, 1992, 54(1), pp.117-122
Journal articles hal-00698414v1

Maintenance requirements of Escherichia coli ATCC 25922 in the presence of sub-inhibitory concentrations of various antibiotics

J.R. Lobry , G. Carret , Jean-Pierre Flandrois
Journal of Antimicrobial Chemotherapy, 1992, 29, pp.121-127
Journal articles hal-00698024v1

[Comparative study of two systems for the determination of the sensitivity of yeasts to antifungal agents].

M de Montclos , H. de Montclos , Jean-Pierre Flandrois
Pathologie Biologie, 1992, 40 (5), pp.495-9
Journal articles hal-02332641v1

Coagulase-negative staphylococci emerging during teicoplanin therapy and problems in the determination of their sensitivity

Monique Chomarat , Daniel Espinouse , Jean-Pierre Flandrois
Journal of Antimicrobial Chemotherapy, 1991, 27 (4), pp.475-480. ⟨10.1093/jac/27.4.475⟩
Journal articles hal-02332642v1

A FORTRAN subroutine for the determination of parameter confidence limits in non-linear Models

J.R. Lobry , L. Rosso , Jean-Pierre Flandrois
Binary, 1991, 3, pp.86-93
Journal articles hal-00698031v1

Comparison of estimates of Monod's growth model from the same data set

J.R. Lobry , Jean-Pierre Flandrois
Binary, 1991, 3, pp.20-23
Journal articles hal-00698025v1

Biphasic kinetics of bacterial killing by quinolones

G. Carret , Jean-Pierre Flandrois , Jean R Lobry
Journal of Antimicrobial Chemotherapy, 1991, 27 (3), pp.319-327. ⟨10.1093/jac/27.3.319⟩
Journal articles hal-02332643v1

Time-killing curves of Pseudomonas aeruginosa strains exposed to polymyxin B

M. Peyret , Jean-Pierre Flandrois , G. Fardel
Pathologie Biologie, 1991, 39, pp.446-450
Journal articles hal-00698139v1

[Time-killing curves of Pseudomonas aeruginosa strains exposed to polymyxin B].

M. Peyret , Jean-Pierre Flandrois , G. Fardel
Pathologie Biologie, 1991, 39 (5), pp.446-50
Journal articles hal-02332645v1

[Influence of the culture medium (Isosensitest or Mueller-Hinton) on the results of antibiotics susceptibility testing and its interpretation].

Jean-Pierre Flandrois , M. Peyret , J Zindel
Pathologie Biologie, 1991, 39 (5), pp.455-60
Journal articles hal-02334573v1

Etude sur quatre ans des cas de yersiniose dans un service d'hépato-gastro-entérologie de la région lyonnaise

Jean-Pierre Flandrois , F. Bailly , M. Peyret , L. Descos
Médecine et Maladies Infectieuses, 1991, 21, pp.371-375. ⟨10.1016/S0399-077X(05)81308-3⟩
Journal articles hal-02334571v1

[Expert systems and antibiotic sensitivity test].

Jean-Pierre Flandrois , G. Carret
Annales de Biologie Clinique, 1991, 49 (3), pp.166-71
Journal articles hal-02334572v1

Susceptibility to Aminoglycosides of 63 Strains of Stomatococcus mucilaginosus Isolated from Sputum

Monique Chomarat , Marie-Gabrielle Vital , Jean-Pierre Flandrois
Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1991, 276 (1), pp.63-67. ⟨10.1016/S0934-8840(11)80219-7⟩
Journal articles hal-02332646v1

Mathematical study of the sensitivity curves of Escherichia coli exposed to polymyxins

M. Peyret , Jean-Pierre Flandrois , G. Fardel
Pathologie Biologie, 1990, 38, pp.441-445
Journal articles hal-00698138v1

Preparation of a Latex Reagent for the Detection of Anti-Staphylococcus aureus Ribitol Teichoic Acid Antibodies

Michèle de Montclos , Jean-Pierre Flandrois
Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1990, 274 (1), pp.50-60. ⟨10.1016/S0934-8840(11)80974-6⟩
Journal articles hal-02332653v1

Isolation ofSporosarcina ureae from a bronchial biopsy in a child with cystic fibrosis

Jean-Pierre Flandrois , M. Chomarat , M. Montclos , F. Breysse
European Journal of Clinical Microbiology and Infectious Diseases, 1990, 9 (4), pp.302-303. ⟨10.1007/bf01968068⟩
Journal articles hal-02332652v1

[Mathematical study of the sensitivity curves of Escherichia coli exposed to polymyxins].

M. Peyret , G. Carret , C. Carré , G. Fardel , Jean-Pierre Flandrois
Pathologie Biologie, 1990, 38 (5), pp.441-5
Journal articles hal-02332651v1

Bacterial Strain Characterization Using Mathematical Modelling of Growth

Marie-Joëlle Rochet , Jean-Pierre Flandrois
Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1989, 271 (1), pp.2-10. ⟨10.1016/S0934-8840(89)80047-7⟩
Journal articles hal-02332655v1

[Bacteriostatic and bactericidal antibiotics: differences in subinhibitory concentration effects on the growth of Escherichia coli].

S Comby , G. Carret , A. Pavé , Jean-Pierre Flandrois , C. Pichat
Pathologie Biologie, 1989, 37 (5), pp.335-40
Journal articles hal-02332659v1

Mathematical modelling of growth of Escherichia coli at subinhibitory levels of chloramphenicol or tetracyclines

Jean-Pierre Flandrois , S. Comby , J.P. Flandrois , G. Carret , C. Pichat
Research in Microbiology, 1989, 140 (3), pp.243-254. ⟨10.1016/0923-2508(89)90079-X⟩
Journal articles hal-02332654v1

[Interpretative reading and quality control of an antibiotic sensitivity test using an expert system. Application to the API ATB system and Enterobacteriaceae].

M. Peyret , Jean-Pierre Flandrois , G. Carret , C. Pichat
Pathologie Biologie, 1989, 37 (5 Pt 2), pp.624-8
Journal articles hal-02332658v1

[Value of enzymuria during antibacterial therapy].

C Flandrois , Jean-Pierre Flandrois , D Coullioud , I Maire
Pathologie Biologie, 1989, 37 (5 Pt 2), pp.657-63
Journal articles hal-02332656v1

Study of staphylococcus aureus teichoic acid immunodominant site by help of synthetic haptens

Michèle Pérouse de Montclos , Paul Boullanger , Jean-Pierre Flandrois
Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1988, 267 (3), pp.414-424. ⟨10.1016/S0176-6724(88)80058-0⟩
Journal articles hal-02332687v1

[A mathematical study of the mortality curve of Escherichia coli exposed to aminoglycosides].

Jean-Pierre Flandrois , G. Carret , G. Fardel
Pathologie Biologie, 1988, 36 (5), pp.446-51
Journal articles hal-02332694v1

Early stages of in vitro killing curve of LY146032 and vancomycin for Staphylococcus aureus.

Jean-Pierre Flandrois , Ghislaine Fardel , G. Carret
Antimicrobial Agents and Chemotherapy, 1988, 32 (4), pp.454-457. ⟨10.1128/AAC.32.4.454⟩
Journal articles hal-02332661v1

Corynebacterium JK: surgical infections in non-immunosuppressed patients

Jean-Pierre Flandrois , A. Lepape , P.Y. Carry , M. Chomarat , J.P. Perdrix
Intensive Care Medicine, 1988, 15 (1), ⟨10.1007/bf00255631⟩
Journal articles hal-02332688v1

[Use of an expert system as a tool to carry out urinary cyto-bacteriologic tests].

S Comby , G. Carret , Jean-Pierre Flandrois , A. Pavé , M Perouse de Montclos
Annales de Biologie Clinique, 1988, 46 (8), pp.669-72
Journal articles hal-02332663v1

Mathematical modelling of bacterial growth at subinhibitory levels of aminoglycosides

Jean-Pierre Flandrois , S Comby , G. Carret , C. Pichat
Annales de l'Institut Pasteur / Microbiologie, 1988, 139 (5), pp.613-629. ⟨10.1016/0769-2609(88)90159-7⟩
Journal articles hal-02332662v1

[An expert system as an aid to the validation of results of the antibiogram. Feasibility study based on the example of Staphylococcus aureus].

S Comby , Jean-Pierre Flandrois , A. Pavé
Pathologie Biologie, 1988, 36 (5), pp.381-5
Journal articles hal-02332664v1

[Demonstration of an inoculum effect on the estimation of the minimal inhibitory concentration of LY 146032].

Jean-Pierre Flandrois , G. Carret , M. Peyret , Catherine Pichat
Pathologie Biologie, 1988, 36 (5), pp.377-80
Journal articles hal-02332666v1

[Effect of subinhibitory concentrations of antibiotics on the growth level of bacteria].

G. Carret , B Charpe , A Cheruy , Jean-Pierre Flandrois , A. Pavé
Pathologie Biologie, 1987, 35 (5), pp.483-93
Journal articles hal-02332695v1

[Evaluation of the Rapid-ATB system for testing the sensitivity of staphylococci to antibiotics. Comparison with the agar dilution reference method].

P Le Noc , G. Carret , C. Couix , Jean-Pierre Flandrois , J Gayral
Pathologie Biologie, 1986, 34 (5 Pt 2), pp.600-3
Journal articles hal-02332697v1

Bacterial growth measurement using an automated system: Mathematical modelling and analysis of growth kinetics

Jean-Pierre Flandrois , A. Corman , G. Carret , A. Pavé , C. Couix
Annales de l'Institut Pasteur / Microbiologie, 1986, 137 (1), pp.133-143. ⟨10.1016/S0769-2609(86)80102-8⟩
Journal articles hal-02332696v1

Gelatin and collagen binding to Staphylococcus aureus strains.

G. Carret , H. Emonard , G. Fardel , M. Druguet , D. Herbage
Ann Inst Pasteur Microbiol, 1985, 136A, pp.241-245
Journal articles hal-00312957v1

[Nonparametric approach to the determination of critical diameters. Comparison with conventional methods].

Jean-Pierre Flandrois , G. Carret
Pathologie Biologie, 1984, 32 (5 Pt 2), pp.488-91
Journal articles hal-02332698v1

Evolution de la résistance aux antibiotiques des agents infectieux en milieu hospitalier

J Fleurette , S Chassignol , A Moulin , A Biron , Jean-Pierre Flandrois
Bulletin de l'Institut national de la sante et de la recherche medicale, 1970, 25 (5), pp.963-92
Journal articles hal-02328996v1