Jerome Bonnet

21
Documents

Publications

Publications

LactoSpanks: A Collection of IPTG Inducible Promoters for the Commensal Lactic Acid Bacteria Lactobacillus gasseri

Elsa Fristot , Guillaume Cambray , Jerome Bonnet
ACS Synthetic Biology, 2024, 13 (3), pp.951-957. ⟨10.1021/acssynbio.3c00438⟩
Article dans une revue hal-04651063 v1

Split Reporters Facilitate Monitoring of Gene Expression and Peptide Production in Linear Cell-Free Transcription–Translation Systems

Antoine Lévrier , Julien Capin , Pauline Mayonove , Ioannis-Ilie Karpathakis , Peter Voyvodic et al.
ACS Synthetic Biology, 2024, ⟨10.1021/acssynbio.4c00353⟩
Article dans une revue hal-04727359 v1
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Evaluating and mitigating clinical samples matrix effects on TX-TL cell-free performance

Peter Voyvodic , Ismael Conejero , Khouloud Mesmoudi , Eric Renard , Philippe Courtet et al.
Scientific Reports, 2022, 12 (1), pp.13785. ⟨10.1038/s41598-022-17583-4⟩
Article dans une revue hal-03763052 v1
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PeroxiHUB : a modular cell-free biosensing platform using H2O2 as signal integrator

Paul Soudier , Ana Zúñiga , Thomas Duigou , Peter Voyvodic , Kenza Bazi-Kabbaj et al.
ACS Synthetic Biology, 2022, 11 (8), pp 2578-2588. ⟨10.1021/acssynbio.2c00138⟩
Article dans une revue hal-03649349 v2
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A rapid and standardized workflow for functional assessment of bacterial biosensors in fecal samples

Ana Zúñiga , Geisler Muñoz-Guamuro , Lucile Boivineau , Pauline Mayonove , Ismael Conejero et al.
Frontiers in Bioengineering and Biotechnology, 2022, 10, pp.859600. ⟨10.3389/fbioe.2022.859600⟩
Article dans une revue hal-04454970 v1
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Programmable receptors enable bacterial biosensors to detect pathological biomarkers in clinical samples

Hung-Ju Chang , Ana Zúñiga , Ismael Conejero , Peter L. Voyvodic , Jérôme Gracy et al.
Nature Communications, 2021, 12 (1), pp.5216. ⟨10.1038/s41467-021-25538-y⟩
Article dans une revue hal-03641379 v1
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Differentially optimized cell-free buffer enables robust expression from unprotected linear DNA in exonuclease-deficient extracts

Angelo Cardoso Batista , Antoine Levrier , Paul Soudier , Peter L Voyvodic , Tatjana Achmedov et al.
ACS Synthetic Biology, 2021, pp.acssynbio.1c00448. ⟨10.1101/2021.09.07.459228⟩
Article dans une revue hal-03545788 v1
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Rational programming of history-dependent logic in cellular populations

Ana Zúñiga , Sarah Guiziou , Pauline Mayonove , Zachary Ben Meriem , Miguel Camacho et al.
Nature Communications, 2020, 11 (1), pp.4758. ⟨10.1038/s41467-020-18455-z⟩
Article dans une revue inserm-02952457 v1
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Metabolic perceptrons for neural computing in biological systems

Amir Pandi , Mathilde Koch , Peter L. Voyvodic , Paul Soudier , Jérôme Bonnet et al.
Nature Communications, 2019, 10 (1), pp.1-13. ⟨10.1038/s41467-019-11889-0⟩
Article dans une revue hal-02275517 v1
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Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors

Peter Voyvodic , Amir Pandi , Mathilde Koch , Ismael Conejero , Emmanuel Valjent et al.
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-09722-9⟩
Article dans une revue hal-02399479 v1
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A modular receptor platform to expand the sensing repertoire of bacteria

Hung-Ju Chang , Pauline Mayonove , Agustin Zavala , Angelique de Visch , Philippe Minard et al.
ACS Synthetic Biology, 2018, 7, pp.166--175. ⟨10.1021/acssynbio.7b00266⟩
Article dans une revue hal-02176995 v1
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An Automated Design Framework for Multicellular Recombinase Logic

Sarah Guiziou , Federico Ulliana , Violaine Moreau , Michel Leclère , Jerome Bonnet
ACS Synthetic Biology, 2018, 7 (5), pp.1406-1412. ⟨10.1021/acssynbio.8b00016⟩
Article dans une revue hal-04725198 v1
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A part toolbox to tune genetic expression in Bacillus subtilis

Sarah Guiziou , Vincent Sauveplane , Hung-Ju Chang , Caroline Clerté , Nathalie Declerck et al.
Nucleic Acids Research, 2016, 44 (15), pp.7495-7508. ⟨10.1093/nar/gkw624⟩
Article dans une revue hal-02639876 v1
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Analytic framework for a stochastic binary biological switch

Guilherme Innocentini , Sarah Guiziou , Jerome Bonnet , Ovidiu Radulescu
Physical Review E , 2016, 94 (6), pp.062413. ⟨10.1103/PhysRevE.94.062413⟩
Article dans une revue hal-03644297 v1

Detection of pathological biomarkers in human clinical samples via amplifying genetic switches and logic gates

Alexis Courbet , Drew Endy , Eric Renard , Franck Molina , Jérôme Bonnet
Science Translational Medicine, 2015, 7 (289), pp.289ra83--289ra83. ⟨10.1126/scitranslmed.aaa3601⟩
Article dans une revue hal-01989460 v1

Polycomb-dependent Regulatory Contacts between Distant Hox Loci in Drosophila

Frederic Bantignies , Virginie Roure , Itys Comet , Benjamin Leblanc , Bernd Schuettengruber et al.
Cell, 2011, 144 (2), pp.214-226. ⟨10.1016/j.cell.2010.12.026⟩
Article dans une revue hal-00575083 v1
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Differential phosphorylation of Cdc25C phosphatase in mitosis.

Jérôme Bonnet , Pauline Mayonove , May C Morris
Biochemical and Biophysical Research Communications, 2008, 370 (3), pp.483-8. ⟨10.1016/j.bbrc.2008.03.117⟩
Article dans une revue hal-00345928 v1

Characterization of centrosomal localization and dynamics of Cdc25C phosphatase in mitosis.

Jérôme Bonnet , Peter Coopman , May C Morris
Cell Cycle, 2008, 7 (13), pp.1991-8. ⟨10.4161/cc.7.13.6095⟩
Article dans une revue hal-00350866 v1
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Boolean Recombinase-Based Devices

Guillaume Pérution-Kihli , Sarah Guiziou , Federico Ulliana , Michel Leclère , Jérôme Bonnet
TPNC 2019 - 8th International Conference on Theory and Practice of Natural Computing, Dec 2019, Kingstone, Canada. pp.82-94, ⟨10.1007/978-3-030-34500-6_5⟩
Communication dans un congrès lirmm-02416052 v1
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Scalable composition frameworks for multicellular logic

Sarah Guiziou , Pauline Mayonove , Federico Ulliana , Violaine Moreau , Michel Leclère et al.
BIOSYNSYS, Oct 2017, La Grande Motte, France. ⟨10.1101/150987⟩
Communication dans un congrès lirmm-01662689 v1