Jerome Bonnet

Publications

Article dans une revue (20)

CF2H: a Cell-Free Two-Hybrid platform for rapid protein binder screening Julien Capin,Pauline Mayonove,Angelique Devisch,Amon Becher,Giang Ngoet al. BioRxiv, 2025, ⟨10.1101/2025.07.16.665152⟩ Article dans une revue hal-05345435v1
LactoSpanks: A Collection of IPTG Inducible Promoters for the Commensal Lactic Acid Bacteria Lactobacillus gasseri Elsa Fristot,Guillaume Cambray,Jerome Bonnet ACS Synthetic Biology, 2024, 13 (3), pp.951-957. ⟨10.1021/acssynbio.3c00438⟩ Article dans une revue hal-04651063v1
Microbial biosensors for diagnostics, surveillance and epidemiology: Today's achievements and tomorrow's prospects Julien Capin,Emile Chabert,Ana Zúñiga,Jerome Bonnet Microbial Biotechnology, 2024, 17 (11), pp.e70047. ⟨10.1111/1751-7915.70047⟩ Article dans une revue (article de synthèse) hal-05087316v1
Split Reporters Facilitate Monitoring of Gene Expression and Peptide Production in Linear Cell-Free Transcription–Translation Systems Antoine Lévrier,Julien Capin,Pauline Mayonove,Ioannis-Ilie Karpathakis,Peter Voyvodicet al. ACS Synthetic Biology, 2024, ⟨10.1021/acssynbio.4c00353⟩ Article dans une revue hal-04727359v1
Evaluating and mitigating clinical samples matrix effects on TX-TL cell-free performance Peter Voyvodic,Ismael Conejero,Khouloud Mesmoudi,Eric Renard,Philippe Courtetet al. Scientific Reports, 2022, 12 (1), pp.13785. ⟨10.1038/s41598-022-17583-4⟩ Article dans une revue hal-03763052v1
PeroxiHUB : a modular cell-free biosensing platform using H2O2 as signal integrator Paul Soudier,Ana Zúñiga,Thomas Duigou,Peter Voyvodic,Kenza Bazi-Kabbajet al. ACS Synthetic Biology, 2022, 11 (8), pp 2578-2588. ⟨10.1021/acssynbio.2c00138⟩ Article dans une revue hal-03649349v2
A rapid and standardized workflow for functional assessment of bacterial biosensors in fecal samples Ana Zúñiga,Geisler Muñoz-Guamuro,Lucile Boivineau,Pauline Mayonove,Ismael Conejeroet al. Frontiers in Bioengineering and Biotechnology, 2022, 10, pp.859600. ⟨10.3389/fbioe.2022.859600⟩ Article dans une revue hal-04454970v1
Programmable receptors enable bacterial biosensors to detect pathological biomarkers in clinical samples Hung-Ju Chang,Ana Zúñiga,Ismael Conejero,Peter L. Voyvodic,Jérôme Gracyet al. Nature Communications, 2021, 12 (1), pp.5216. ⟨10.1038/s41467-021-25538-y⟩ Article dans une revue hal-03641379v1
Differentially optimized cell-free buffer enables robust expression from unprotected linear DNA in exonuclease-deficient extracts Angelo Cardoso Batista,Antoine Levrier,Paul Soudier,Peter L Voyvodic,Tatjana Achmedovet al. ACS Synthetic Biology, 2021, pp.acssynbio.1c00448. ⟨10.1101/2021.09.07.459228⟩ Article dans une revue hal-03545788v1
Rational programming of history-dependent logic in cellular populations Ana Zúñiga,Sarah Guiziou,Pauline Mayonove,Zachary Ben Meriem,Miguel Camachoet al. Nature Communications, 2020, 11 (1), pp.4758. ⟨10.1038/s41467-020-18455-z⟩ Article dans une revue inserm-02952457v1
Metabolic perceptrons for neural computing in biological systems Amir Pandi,Mathilde Koch,Peter L. Voyvodic,Paul Soudier,Jérôme Bonnetet al. Nature Communications, 2019, 10 (1), pp.1-13. ⟨10.1038/s41467-019-11889-0⟩ Article dans une revue hal-02275517v1
Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors Peter Voyvodic,Amir Pandi,Mathilde Koch,Ismael Conejero,Emmanuel Valjentet al. Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-09722-9⟩ Article dans une revue hal-02399479v1
A modular receptor platform to expand the sensing repertoire of bacteria Hung-Ju Chang,Pauline Mayonove,Agustin Zavala,Angelique de Visch,Philippe Minardet al. ACS Synthetic Biology, 2018, 7, pp.166--175. ⟨10.1021/acssynbio.7b00266⟩ Article dans une revue hal-02176995v1
An Automated Design Framework for Multicellular Recombinase Logic Sarah Guiziou,Federico Ulliana,Violaine Moreau,Michel Leclère,Jerome Bonnet ACS Synthetic Biology, 2018, 7 (5), pp.1406-1412. ⟨10.1021/acssynbio.8b00016⟩ Article dans une revue hal-04725198v1
A part toolbox to tune genetic expression in Bacillus subtilis Sarah Guiziou,Vincent Sauveplane,Hung-Ju Chang,Caroline Clerté,Nathalie Declercket al. Nucleic Acids Research, 2016, 44 (15), pp.7495-7508. ⟨10.1093/nar/gkw624⟩ Article dans une revue hal-02639876v1
Analytic framework for a stochastic binary biological switch Guilherme Innocentini,Sarah Guiziou,Jerome Bonnet,Ovidiu Radulescu Physical Review E , 2016, 94 (6), pp.062413. ⟨10.1103/PhysRevE.94.062413⟩ Article dans une revue hal-03644297v1
Detection of pathological biomarkers in human clinical samples via amplifying genetic switches and logic gates Alexis Courbet,Drew Endy,Eric Renard,Franck Molina,Jérôme Bonnet Science Translational Medicine, 2015, 7 (289), pp.289ra83--289ra83. ⟨10.1126/scitranslmed.aaa3601⟩ Article dans une revue hal-01989460v1
Polycomb-dependent Regulatory Contacts between Distant Hox Loci in Drosophila Frederic Bantignies,Virginie Roure,Itys Comet,Benjamin Leblanc,Bernd Schuettengruberet al. Cell, 2011, 144 (2), pp.214-226. ⟨10.1016/j.cell.2010.12.026⟩ Article dans une revue hal-00575083v1
Differential phosphorylation of Cdc25C phosphatase in mitosis. Jérôme Bonnet,Pauline Mayonove,May C Morris Biochemical and Biophysical Research Communications, 2008, 370 (3), pp.483-8. ⟨10.1016/j.bbrc.2008.03.117⟩ Article dans une revue hal-00345928v1
Characterization of centrosomal localization and dynamics of Cdc25C phosphatase in mitosis. Jérôme Bonnet,Peter Coopman,May C Morris Cell Cycle, 2008, 7 (13), pp.1991-8. ⟨10.4161/cc.7.13.6095⟩ Article dans une revue hal-00350866v1

Pré-publication, Document de travail (1)

LactoSpanks: a collection of IPTG inducible promoters for the commensal lactic acid bacteria Lactobacillus gasseri Elsa Fristot,Guillaume Cambray,Jerome Bonnet 2023 Pré-publication, Document de travail (preprint/prepublication) hal-04233209v1

Communication dans un congrès (3)

Information processing circuits in cell-free systems: beyond gene expression regulation Manish Kushwaha,Amir Pandi,Mathilde Koch,Paul Soudier,Angelo Cardoso Batistaet al. International Conference on Engineering Synthetic Cells and Organelles, May 2023, Minneapolis, MN, USA, United States Communication dans un congrès hal-04563028v1
Boolean Recombinase-Based Devices Guillaume Pérution-Kihli,Sarah Guiziou,Federico Ulliana,Michel Leclère,Jérôme Bonnet TPNC 2019 - 8th International Conference on Theory and Practice of Natural Computing, Dec 2019, Kingstone, Canada. pp.82-94, ⟨10.1007/978-3-030-34500-6_5⟩ Communication dans un congrès lirmm-02416052v1
Scalable composition frameworks for multicellular logic Sarah Guiziou,Pauline Mayonove,Federico Ulliana,Violaine Moreau,Michel Leclèreet al. BIOSYNSYS, Oct 2017, La Grande Motte, France. ⟨10.1101/150987⟩ Communication dans un congrès lirmm-01662689v1