Jérôme Hamelin
Publications
Publications
Metabolic Responses of Oxygenic Photogranules to Carbon and Light Fluctuations: Insights from Longitudinal Metabolomics1. International Conference on Photogranules, Sep 2025, Delft, Netherlands |
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Oxygenic photogranules change metabolism when exposed to shifts in carbon and light availabilities11. Microbial Ecology and Water Engineering Conference, Jun 2025, Atlanta, United States |
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Utilisation de l’hétérogénéité multi-échelle des agrégats bactériens pour piloter les procédés à photogranulesMICROBES 2024 Bienvenue chez les Microbes, Société Française de Microbiologie, Oct 2024, Lille, France |
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Multi-scale structuring of biologically active aggregates used in biotechnology: photogranules13. Colloque Sciences et Technologies des Poudres (STP 2024), Société Française de Génie des Procédés, Jun 2024, Montpellier, France |
Chromatic adaptation of cyanobacterial strains isolated from photogranules exposed to light of different colors1. International Conference on Novel PhotoRefineries for Resource Recovery (PHOTOREFINERIES 2024), Université de Valladolid, Espagne, Sep 2024, Valladolid, Spain |
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Soil Microbial Community and Pathogens Variation during Lettuces Drip Irrigation by Raw And Reclaimed Wastewaters13. IWA International Conference On Water Reclamation and Reuse, IWA, Jan 2023, Chennai, India |
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Modification of microbial community structures in soil receiving wastewater of increasing qualities during irrigation period7. International Symposium on Environmental Biotechnology and Engineering (7ISEBE), May 2023, Marseille, France |
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High Biological Methane Potential of photosynthetic granules when grown in SBR7. International Symposium on Environmental Biotechnology and Engineering (7ISEBE), May 2023, Marseille, France |
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Accessibility and complexity of nutrients present in residual microalgal-bacterial biomass for soil conditioning4. International Conference for Bioresource Technology for Bioenergy, Bioproducts & Environmental Sustainability, May 2023, Lake Garda, Italy |
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A quantitative meta-analysis of hygienization during anaerobic digestion10. IWA Microbial Ecology and Water Engineering Specialist Conference, Sep 2023, Brisbane, Australia. ⟨10.17180/zssg-c544⟩ |
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Impact of treated wastewater on soil bacterial communitiesFrancofilt 2023 : Separative Techniques Facing the Challenges of Sustainable Development, Faculté des sciences et Techniques de Fès, May 2023, Fès, Morocco |
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Ecologically engineering methanotrophic photogranules13. IWA Wastewater Ponds and Algal Technologies Conference, IWA, Jul 2022, Melbourne, Australia |
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Chromatic adaptation of cyanobacteria exposed to different light spectra: an engineering tool to direct pigment production42. Frontier Scientists Workshop: Environmental Bio-Technology Workshop for Reducing GHGs Emissions, Korean Academy of Science and Technology, Nov 2022, Narbonne, France |
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Properties of cyanobacterial strains determine the spatial development of a complex phototrophic microbial community42. Frontier Scientists Workshop: Environmental Bio-Technology Workshop for Reducing GHGs Emissions, Korean Academy of Science and Technology, Nov 2022, Narbonne, France |
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Engineering light-driven microbial syntrophies for the generation of value-added products from wasteTheo Murphy scientific meeting “Microbial ecology for engineering biology”, the Royal Society UK, Mar 2022, Steventon, United Kingdom |
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Microscale activities of individual photogranules as a function of light and carbon availabilities28th Frontier Scientists Workshop “Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice”, The Korean Academy of Science and Technology, Nov 2020, Online, South Korea |
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Triangular syntrophic interactions in methanotrophic photogranules28th Frontier Scientists Workshop “Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice”, The Korean Academy of Science and Technology, Nov 2020, Online, France |
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Synthetic consortium of methanotrophy and phototrophy for biological methane conversion28. online Frontier Scientists Workshop “Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice”, Nov 2020, Online, France |
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Mapping the biological activity of a fluffy oxygenic photogranule9ème colloque annuel du Réseau National Biofilm, Dec 2019, Nancy, France |
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Oxygenic photogranules: from ecology to wastewater treatmentMicrobiOccitanie 2019 - Rencontre des Microbiologistes Région Occitanie, Région Occitanie. FRA., Feb 2019, Montpellier, France |
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Naturally occuring cyanobacteria can form oxygenic photogranules to treat wastewater11. International conference on toxic cyanobacteria “Learning from the past to predict the future”, May 2019, Cracovie, Poland |
Recovery of value-added molecules from wastewater, example oxygenic photogranulesConvention of the Korean Civil Engineering Society 2019, Oct 2019, Pyungchang, South Korea |
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Experimental coalescence of microbial communities in anaerobic digestersBridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France |
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Deciphering the role of cyanobacteria for photogranulation through individual based modelingBridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France |
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Optimizing the use of oxygenic photogranules for wastewater treatment in sequencing batch reactorsBridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France |
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Cyanobacterial abundance drives photogranulationIWA Biofilms: Granular Sludge Conference, Delft University of Technology (DTU). NLD. International Water Association (IWA), INT., Mar 2018, Delft, Netherlands |
Substrate complexity favors community coalescence after mixing of methane-producing communitiesISME17 - 17. International Symposium on Microbial Ecology, International Society for Microbial Ecology (ISME). Wageningen, INT., Aug 2018, Leipzig, Germany |
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Présentation du LAMACs : Lab-scale Automated and Multiplexed Anaerobic Chemostat systemJournées Nutrition et Ecosystèmes Microbiens - NEM 2018, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., May 2018, Narbonne, France |
Exploring minimum conditions allowing photogranulationBridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France |
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Ecological engineering of granular phototrophic ecosystemsBridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France |
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Into the background of 16S rDNA sequencing data: looking for ‘rare’ sequences of pathogenic bacteria from DNA of biogas plant digestatesNEM seminar (Nutrition et Ecosystèmes Microbiens), May 2017, Saint Pee sur Nivelle, France |
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ENgineerInG interactions in Methanogenic communities at the Ecosystem level - ENIGMEMEM days (Meta’omics of the microbial ecosystems), Jan 2017, Paris, France |
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Ecological engineering for piloting bioprocessesEnvironmental Biotechnology Workshop, Inha University. KOR., Oct 2017, Incheon, South Korea |
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Replication of experiments in anaerobic digestion: simpler, greater and easier than you had ever hoped15. IWA World Conference on Anaerobic Digestion (AD15), International Water Association (IWA). INT., Nov 2017, Beijing, China |
Formation of oxygenic photo-granules and its application for aeration-free wastewater treatmentWEFTEC 2017 - 90. annual Water Environment Federation’s Annual Technical Exhibition and Conference, Water Environment Federation (WEF). USA., Sep 2017, Chicago, United States |
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Multiplexed chemostats: a smart way for serious testing of ecological theory16. International Symposium on Microbial Ecology - ISME16, International Society for Microbial Ecology (ISME). INT., Aug 2016, Montreal, Canada |
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Blending complex ecosystems: do microbial diversity or microbial interactions matter?NEM seminar (Nutrition et Ecosystèmes Microbiens), May 2016, Jouy-en-Josas, France |
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Photogranules may shake sewage treatment up16. International Symposium on Microbial Ecology - ISME16, International Society for Microbial Ecology (ISME). INT., Aug 2016, Montreal, Canada |
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Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystemsPhages On Marseille, Nov 2016, Marseille, France. pp.1 |
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Ecological engineering of oxygenic photogranules for biotechnological applicationsAsia Biohydrogen and Biorefinery Symposium (ABBS 2016), Oct 2016, Jeju, South Korea |
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Manager les ressources microbiennes impliquées dans la digestion anaérobieJournées Recherche Industrie Biogaz-Méthanisation (JRI2015), Institut National de Recherche en Sciences et Technologies pour l'Environnement et l'Agriculture (IRSTEA). Rennes, FRA., Feb 2015, Rennes, France |
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Filamentous cyanobacteria in granular biofilms containing microalgae and bacteria249. American Chemical Society National Meeting & Exposition, American Chemical Society (ACS). USA., Mar 2015, Denver, United States |
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Dynamique des communautés algales et bactériennes durant la colonisation de lagunes ouvertes : lien avec la communauté aéroportée7. Colloque AFEM, Association Francophone d'Ecologie Microbienne (AFEM). FRA., Nov 2015, Anglet, France |
Mixing ecosystems during start-up of anaerobic digesters improves final performanceInternational Conference on Anaerobic Digestion. AD Technology and Microbial Ecology for Sustainable Development (ADTech2015), Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Feb 2015, Chiang Mai, Thailand |
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Neglecting the inoculum of anaerobic digesters: a missed opportunity?14. World Congress on Anaerobic Digestion (AD14), International Water Association (IWA). INT., Nov 2015, Viña del Mar, Chile |
Integration of microalgae and anaerobic digestion within a biorefinery approach for reuse and/or recovery of human residues1. International Seminar on Algal Technologies for Wastewater Treatment and Resource Recovery, United Nations Educational Scientific and Cultural Organization (UNESCO). INT., Apr 2015, Delft, Netherlands |
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Keynote: How to use molecular biology tools for the study of anaerobic digestion process?14. World Congress on Anaerobic Digestion (AD14), International Water Association (IWA). INT., Nov 2015, Viña del Mar, Chile |
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Dark fermentation of lignocellulosic biomass: byproducts of dilute acid hydrolysis of sunflower stalks provoke a metabolic shift from hydrogen/acetate/butyrate to lactate/ethanolRéunion du réseau COST EUBis, Jan 2014, Toulouse, France |
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Engineering and managing microbial ecosystems to obtain and maintain a desired process performance – Ecological (and molecular) approaches for biotechnological questionsSeminar at Korean Institute for Energy Research, Korean Institute for Energy Research (KIER). Daejon, KOR., Aug 2014, Daejon, South Korea |
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Robust estimation of phylogenetic diversity: steer clear of rare speciesBioinformatique pour la Génomique Environnementale (BGE2014), May 2014, Lyon, France |
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Recycling anaerobic digestion effluents in microalgae cultureYoung Algaeneers Symposium (YAS2014), Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Apr 2014, Montpellier, France |
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Estimation of Diversity: what we WANT and what we CAN estimateSeminar at Korean Institute for Energy Research (KIER), Korean Institute for Energy Research (KIER). Daejon, KOR., Aug 2014, Daejon, South Korea |
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Is performance of anaerobic digestion dictated by the inoculum and traceable by bioindicators?15. International Symposium on Microbial Ecology ISME 15, Aug 2014, Seoul, South Korea |
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How can we best engineer and manage microbial ecosystems to obtain and maintain a desired process performance and stability?Réunion annuelle du réseau INRA Nutrition et Ecosystèmes Microbiens (NEM), Apr 2014, Clermont-Ferrand, France |
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Diversity effects explain overyielding in assembled anaerobic foodwebs15. International Symposium on Microbial Ecology ISME 15, Aug 2014, Seoul, South Korea |
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The role of microbial diversity in ecosystem functioning : More than the sum of its partSéminaire à l’Université Catholique Pontificale de Valparaiso (PUCV), Pontificia Universidad Católica de Valparaíso (PUCV). Valparaiso, CHL., Dec 2014, Valparaiso, Chile |
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Biological control of microbial communities producing biohydrogenBioH2 2013, Aug 2013, Montreal, Canada |
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Structuration spatiale des communautés microbiennes au cours de la dégradation et de la conversion de la lignocellulose en biogazJournées thématiques du Réseau National Biofilm, Les Biofilms, Remue-Ménage aux Interfaces, Université de Pau et des Pays de l'Adour (UPPA). FRA., Nov 2013, Pau, France |
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New urban wastewater treatment with Autotrophic Membrane Bioreactor (AutoMBR) at low COD/N substrate ratio7. IWA Specialised Membrane Technology Conference and Exhibition for Water and Wastewater Treatment and Reuse, International Water Association (IWA). INT., Aug 2013, Toronto, Canada |
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Acclimation of halophilic microbial communities from anaerobic sediments in continuous anaerobic bioreactors13. World Congress on Anaerobic Digestion: Recovering (bio) Resources for the World. AD13, International Water Association (IWA). IWA Anaerobic Digestion Specialist Group, INT., Jun 2013, Santiago de Compostela, Spain. 171 p |
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Utilisation de facteurs biotiques de contrôle d’écosystèmes fermentaires9ème Congrès National de la Société Française de Microbiologie, Société Française de Microbiologie (SFM). FRA., Feb 2013, Lille, France |
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Combined alkaline- enzymatic pretreatments with sunflower stalks enhance biohydrogen productionBioH2 2013, Aug 2013, Montreal, Canada |
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Use of biotic factors to stabilize or improve the fermentative hydrogen production in mixed cultures19. World Hydrogen Energy Conference - WHEC 2012, Canadian Hydrogen and Fuel Cell Association. CAN., Jun 2012, Toronto, Canada |
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How does community structure affect performance of ecosystem function ?Journées des microbiologistes de l’INRA, Institut National de Recherche Agronomique (INRA). UAR Département Microbiologie et Chaîne Alimentaire (1194)., Nov 2012, Isle-sur-la-Sorgue, France |
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Avancement du projet CreativERU7ème Journées Ecotechnologies, Nov 2012, Montpellier, France |
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Rôle des matériaux-supports sur la mise en place d’un biofilm. Impact sur le démarrage d’un réacteur anaérobie5. Journées Thématiques, Les biofilms au service des biotechnologies, Bioénergies, Agro-alimentaire, Environnement, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jan 2012, Narbonne, France |
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Chemical and toxicological assessments of anaerobic digesters removing EDCsInternational conference PNRPE 2012 "Recent advances on the environmental and health effects of endocrine disrupters", Dec 2012, Paris, France |
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Rarity and the problem of measuring diversity14. International Symposium of Microbial Ecology (ISME14) "The Power of the Small", International Society for Microbial Ecology (ISME). INT., Aug 2012, Copenhague, Denmark |
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Devenir de perturbateurs endocriniens et suivi de leur activité au cours de la digestion anaérobie de boues urbainesInternational conference PNRPE 2012 "Recent advances on the environmental and health effects of endocrine disrupters", Dec 2012, Paris, France |
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How animals can help us on anaerobic digestion? The microbial and process engineering points of view1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany. KL3-2 page 18 |
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Impact of hydraulic retention time (HRT) on biofilm development: molecular analysis and modelling of microbial competitionIWA Biofilm Conference 2011 Processes in Biofilms, Oct 2011, Shanghai, China |
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Improvement of RNA-SIP by pyrosequencing to identify putative 4-n-nonylphenol degraders in activated sludgeColloque Génomique Environnementale Lyon 2011, Nov 2011, Lyon, France |
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Major role of sub-dominant bacteria in mixed cultures producing biohydrogen by dark fermentation1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany |
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Influence of total solids on bacterial and archaeal communities in semi-dry and dry anaerobic digestion1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany |
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The dynamics of diversity of an activated sludge in artificially coupled microcosms mimicking ecosystems with increasing dispersalIWA conference on Microbes in Wastewater & Waste Treatment, Bioremediation and Energy Production (MWT 2011, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jan 2011, Goa, India |
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Effects of lignocellulose-derived compounds on fermentative hydrogen-producing mixed cultures1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany |
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Ecosystèmes en microplaquesRéunion annuelle du réseau INRA Nutrition et Ecosystèmes Microbiens (NEM), Feb 2011, Nouzilly, France |
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Organic micropollutants degradation under anaerobic mesophilic condition with respect to the inoculum origin1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany |
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Influence of support material properties on the adhesion and growth as a biofilm of a methanogenic consortium12th World Congress on anaerobic digestion, Oct 2010, Guadalajara, Mexico |
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Influence of total solid concentration on anaerobic digestion : from wet to dry technologyVenice 2010 - Third International Symposium on Energy from Biomass and Waste, Nov 2010, Venise, Italy |
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Diversity and the neutral chemostat: ExperimentESF Workshop on Theoretical Microbial Ecology, Feb 2008, Glasgow, United Kingdom |
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Diversity of the nitrate reductase genes in the Pseudomonas genus1. FEMS congress of European microbiologists, Jun 2003, Ljubljana, Slovenia |
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Influencce of elevated atmospheric pCO2 on the culturable nitrate-dissimilating Pseudomonas and their nitrate reductases in the rhizosphere of perennial grassesInternational symposium : structure and function of soil microbiota, Sep 2003, Marburg, Germany |
Inoculating the microbiota for functional control - a seemingly impossible undertaking, a reflection on deadlocks19. International Symposium on Microbial Ecology (ISME19), Aug 2024, Cape Town, South Africa. 2024 |
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Développement d’un protocole de co-extractions transcriptomiques et métabolomiques pour la caractérisation des photogranules oxygéniques16. Journées du RFMF 2024, Jun 2024, Saint-Malo, France |
Suivi des communautés bactériennes endémiques et des pathogènes lors du retour au sol des eaux usées traitées18. Congrès de la Société Française de Génie des Procédés (SFGP 2022) « Sciences et Solutions technologiques pour la Transition », Nov 2022, Toulouse, France |
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Effect of shear stress on the growth of a native microalgal-bacteria consortium in a pilot scale raceway treating urban wastewaterIWA Biofilm : Granular Sludge Conference, IWAlgae2019, Jul 2019, Valladolid, Spain |
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Dynamic of algal and bacterial communities during colonization of open-water ponds: link with atmospheric microbial community2. EMBO Conference on Aquatic Microbial Ecology (SAME-14), Aug 2015, Uppsala, Sweden. 2015 |
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Is performance of anaerobic digestion dictated by the inoculum and traceable by bioindicators ?Gordon Research Conference “Applied & Environmental Microbiology: Microbes that Influence, Sustain and Protect Our Planet”, Jul 2015, South Hadley, United States. 2015 |
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Distribution spatiale des communautés microbiennes du système hydrothermal alcalin de la baie de Prony, Nouvelle Calédonie6. Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) "Microbiologie Environnementale : du Gène à l’Ecosystème", Oct 2013, Parent, France. 2013 |
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Dynamique et structure des communautés microbiennes dans des bioréacteurs à membrane de nitrification6. Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) "Microbiologie Environnementale : du Gène à l’Ecosystème", Oct 2013, Parent, France. , 2013 |
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How to choose the best inoculum for starting an anaerobic digester?14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012 |
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Human microbiota drives indoor air microbes14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012 |
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Ingénierie écologique d’écosystèmes microbiens : impact de facteurs biotiques sur les réseaux métaboliques d’écosystèmes fermentairesJournées des microbiologistes de l’INRA, Nov 2012, Isle-sur-la-Sorgue, France. 2012, Journées des Microbiologistes de l'INRA 2012 |
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Similar organic micropollutants fate in anaerobic mesophilic digesters fed with the same contaminated sludge but exhibiting different microbial populations and different metabolisms14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012 |
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Interspecies interactions for triggering the hydrogen fermentative metabolism in mixed cultures: biotic factors can stabilize or improve production14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012 |
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Microbial communities associated with alkaline hydrothermal systems of Prony Bay, New Caledonia14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012 |
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Chemical and toxicological assessments of anaerobic digesters removing EDCsPNRPE 2012, Recent advances on the environmental and health effects of endocrine disrupters, Dec 2012, Paris, France. 2012 |
Apport des développements méthodologiques multi-omiques en méthanisationRené Moletta; Romain Cresson. La méthanisation, TEC&DOC, 2024, 978-2-7430-2673-8 |
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Biomasse et déchets pour la production de bioénergiesL'énergie à découvert, 1ère ed., CNRS Editions, 345 p., 2013, A découvert, 978-2-271-07678-6 |
Surr-O-Gate : Mise au point d’un surrogate de bactérie pathogène pour le suivi de l’hygiénisation du procédé de méthanisation et des pré/post-traitementsFrance, N° de brevet: Déclaration d'Invention DI-RV-23-0066. 2023 |
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Method of removing dissolved methane from a liquid composition using biomass in the form of granules and granules of biomass for implementing sameFrance, Patent n° : EP20305063. 2020 |
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Use of Methanotrophic Oxygenic PhotoGranules (MOPG) for methane removal from effluent of any type of anaerobic digesterFrance, Patent n° : Déclaration d'Invention DI-RV-19-0042. 2019 |
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A method for measuring the biological diversity of a sampleFrance, Patent n° : EP 2203744 ( A1) - EP 2053401 (A1) - WO 2009053393 (A1). 2010, 42 p |
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A method for measuring the biological diversity of a sampleFrance, Patent n° : EP 2203744 B1. 2008 |
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A single community dominates structure and function of a mixture of multiple methanogenic communities2017 |