Jérôme Hamelin

188

Documents

Publications

Restoration of deuterium marker for multi-isotope mapping of cellular metabolic activity

Nadiia Yamborko , Laura Schwab , Lubos Polerecky , Yalda Davoudpour , Hugo Berthelot et al.

Scientific Reports, 2026, 16 (1), pp.883. ⟨10.1038/s41598-025-33762-5⟩

Article dans une revue hal-05494457v1

How light and aggregate size shape oxygen profiles in photogranules

Hicham Ouazaite , Elie Desmond-Le Quéméner , Jérôme Hamelin , Jacob Joseph Lamb , Cristian Picioreanu et al.

Bioresource Technology, 2026, 459, pp.135242. ⟨10.1016/j.biortech.2026.135242⟩

Article dans une revue hal-05720351v1

Metagenome-assembled genomes from oxygenic photogranules obtained from photobioreactors treating synthetic wastewater

Oriane Della-Negra , Rémi Servien , Kim Milferstedt , Jérôme Hamelin , Christophe Klopp et al.

Microbiology Resource Announcements, In press, ⟨10.1128/mra.01310-25⟩

Article dans une revue hal-05494466v1

Transient cyanobacteria drive hydrostatic photogranulation but disappear during microbial succession

Sandra Galea-Outón , Jérôme Hamelin , Kim Milferstedt

Biofilm, 2026, 11, pp.100339. ⟨10.1016/j.bioflm.2025.100339⟩

Article dans une revue hal-05494100v1

A meta-analysis of pathogen reduction data in anaerobic digestion

Laura Álvarez-Fraga , Gabriel Capson-Tojo , Malo Sanglier , Jérôme Hamelin , Renaud Escudié et al.

Renewable and Sustainable Energy Reviews, 2025, 207, pp.114982. ⟨10.1016/j.rser.2024.114982⟩

Article dans une revue (article de synthèse) hal-04839458v1

History of carbon supply shapes the metabolic response of photogranules to light shifts

Oriane Della-Negra , Anaïs Séguéla , Camille Guilmineau , Roselyne Gautier , Cécile Canlet et al.

Water Research, 2025, 281, pp.123557. ⟨10.1016/j.watres.2025.123557⟩

Article dans une revue hal-05014975v1

Phototrophic aggregates for wastewater treatment: identifying key parameters for formation and characterization

Clément Billery , Gilberte Gaval , Jérôme Hamelin , Kim Milferstedt

Reviews in Environmental Science and Bio/technology, 2025, 24, pp.425-450. ⟨10.1007/s11157-025-09728-4⟩

Article dans une revue hal-05133228v1

Integrated Co-extraction Protocol for Transcriptomic and 1H NMR Metabolomic Analysis of Multi-species Biofilms

Anaïs Séguéla , Oriane Della-Negra , Roselyne Gautier , Jérôme Hamelin , Kim Milferstedt et al.

Bio-protocol , 2025, 15 (5), pp.5237. ⟨10.21769/BioProtoc.5237⟩

Article dans une revue hal-05007084v1

Bioaccessibility Characterization of Organic Matter, Nitrogen, and Phosphorus from Microalgae-Bacteria Aggregates

Enrique Romero-Frasca , Sandra Galea-Outón , Karina Coronado-Apodaca , Kim Milferstedt , Julie Jimenez et al.

Waste and Biomass Valorization, 2024, 15, pp.5137-5150. ⟨10.1007/s12649-024-02495-3⟩

Article dans une revue hal-04569684v1

Biofilm growth dynamics in a micro-irrigation with reclaimed wastewater in the field scale

Vincent Moulia , Marc Heran , Geoffroy Lesage , Jérôme Hamelin , Jérôme Pinta et al.

Journal of Environmental Management, 2024, 370, pp.122976. ⟨10.1016/j.jenvman.2024.122976⟩

Article dans une revue hal-04748831v1

High methane potential of oxygenic photogranules decreases after starvation

Sandra Galea-Outón , Kim Milferstedt , Jérôme Hamelin

Bioresource Technology, 2024, 406, pp.110986. ⟨10.1016/j.biortech.2024.130986⟩

Article dans une revue hal-04677885v1

Polyhydroxybutyrate Production from Methane and Carbon Dioxide by a Syntrophic Consortium of Methanotrophs with Oxygenic Photogranules without an External Oxygen Supply

Selim Ashoor , Seong-Hoon Jun , Han Do Ko , Jinwon Lee , Jérôme Hamelin et al.

Microorganisms, 2023, 11 (5), pp.1110. ⟨10.3390/microorganisms11051110⟩

Article dans une revue hal-04146720v1

Initial type and abundance of cyanobacteria determine morphotype development of phototrophic ecosystems

Esmee Joosten , Jérôme Hamelin , Kim Milferstedt

FEMS Microbiology Ecology, 2023, 99 (9), pp.fiad099. ⟨10.1093/femsec/fiad099⟩

Article dans une revue hal-04182443v1

Short-term effect of reclaimed wastewater quality gradient on soil microbiome during irrigation

Vincent Moulia , Nassim Ait-Mouheb , Geoffroy Lesage , Jérôme Hamelin , Nathalie Wery et al.

Science of the Total Environment, 2023, 901, pp.166028. ⟨10.1016/j.scitotenv.2023.166028⟩

Article dans une revue hal-04178170v1

Use of additives to improve collective biogas plant performances: A comprehensive review

Estelle Leca , Bastien Zennaro , Jérôme Hamelin , Hélène Carrère , Cecilia Sambusiti

Biotechnology Advances, 2023, 65, pp.108129. ⟨10.1016/j.biotechadv.2023.108129⟩

Article dans une revue (article de synthèse) hal-04117886v1

Screening and Application of Ligninolytic Microbial Consortia to Enhance Aerobic Degradation of Solid Digestate

Ulysse Brémond , Aude Bertrandias , Jérôme Hamelin , Kim Milferstedt , Valérie Bru-Adan et al.

Microorganisms, 2022, 10 (2), pp.277. ⟨10.3390/microorganisms10020277⟩

Article dans une revue hal-03554334v1

Engineered methanotrophic syntrophy in photogranule communities removes dissolved methane

Anissa Sukma Safitri , Jérôme Hamelin , Roald Kommedal , Kim Milferstedt

Water Research X, 2021, 12, pp.100106. ⟨10.1016/j.wroa.2021.100106⟩

Article dans une revue hal-03262321v1

Wastewater treatment using oxygenic photogranule-based process has lower environmental impact than conventional activated sludge process

Doris Brockmann , Yves Gérand , Chul Park , Kim Milferstedt , Arnaud Hélias et al.

Bioresource Technology, 2021, 319, pp.124204. ⟨10.1016/j.biortech.2020.124204⟩

Article dans une revue hal-02962170v1

Mapping the biological activities of filamentous oxygenic photogranules

Hicham Ouazaite , Kim Milferstedt , Jérôme Hamelin , Elie Desmond-Le Quéméner

Biotechnology and Bioengineering, 2021, 118 (2), pp.601-611. ⟨10.1002/bit.27585⟩

Article dans une revue hal-02981499v1

Simple Time-lapse Imaging for Quantifying the Hydrostatic Production of Oxygenic Photogranules

Esmee Joosten , Jérôme Hamelin , Kim Milferstedt

Bio-protocol , 2020, 10 (19), ⟨10.21769/BioProtoc.3784⟩

Article dans une revue hal-02957755v1

Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard

Olivier Zemb , Caroline Achard , Jérôme Hamelin , Marie‐léa de Almeida , Beatrice Gabinaud et al.

MicrobiologyOpen, 2020, 9 (3), Non paginé. ⟨10.1002/mbo3.977⟩

Article dans une revue hal-02625681v1

Growth Progression of Oxygenic Photogranules and Its Impact on Bioactivity for Aeration-Free Wastewater Treatment

Ahmed S. Abouhend , Kim Milferstedt , Jérôme Hamelin , Abeera A. Ansari , Caitlyn Butler et al.

Environmental Science and Technology, 2020, 54, pp.486-496. ⟨10.1021/acs.est.9b04745⟩

Article dans une revue hal-02629305v1

World Scientists’ Warning of a Climate Emergency

William Ripple , Christopher Wolf , Thomas Newsome , Phoebe Barnard , William Moomaw et al.

Bioscience, 2020, 70 (1), pp.8-12. ⟨10.1093/biosci/biz088⟩

Article dans une revue hal-02444102v1

Novel Outlook in Microbial Ecology: Nonmutualistic Interspecies Electron Transfer

Roman Moscoviz , Elie Desmond-Le Quéméner , Eric Trably , Nicolas Bernet , Jérôme Hamelin

Trends in Microbiology, 2020, 28 (4), pp.245-253. ⟨10.1016/j.tim.2020.01.008⟩

Article dans une revue (article de synthèse) hal-02534986v1

The oxygenic photogranule process for aeration-free wastewater treatment

Ahmed S. Abouhend , Adam Mcnair , Wenye C. Kuo-Dahab , Christopher Watt , Caitlyn S. Butler et al.

Environmental Science and Technology, 2018, 52 (6), pp.3503-3511. ⟨10.1021/acs.est.8b00403⟩

Article dans une revue hal-02626952v1

CO2 addition to increase biomass production and control microalgae species in high rate algal ponds treating wastewater

Enrica Uggetti , Bruno Sialve , Jérôme Hamelin , Anaïs Bonnafous , Jean-Philippe Steyer

Journal of CO2 Utilization, 2018, 28, pp.292-298. ⟨10.1016/j.jcou.2018.10.009⟩

Article dans une revue hal-02623794v1

Multiplexed chemostat system for quantification of biodiversity and ecosystem functioning in anaerobic digestion.

Diane Plouchart , Kim Milferstedt , Guillaume Guizard , Eric Latrille , Jérôme Hamelin

PLoS ONE, 2018, 13 (3), pp.e0193748. ⟨10.1371/journal.pone.0193748⟩

Article dans une revue hal-02623358v1

The use of green macroalgae (<em>Ulva lactuca</em> and <em>Codium tomentosum</em>) that have a high methane potential, as a source of biogas in Senegal

Halima Maiguizo-Diagne , Ndeye Aida Ndiaye , Yacine Ndour-Badiane , Dominique Masse , Michel Torrijos et al.

Journal of Applied Biosciences, 2018, 132, pp.13404-13412. ⟨10.4314/jab.v132i1.2⟩

Article dans une revue hal-02618354v1

The importance of filamentous cyanobacteria in the development of oxygenic photogranules

Kim Milferstedt , W. Camilla Kuo-Dahab , C. S. Butler , Jérôme Hamelin , A. S. Abouhend et al.

Scientific Reports, 2017, 7, pp.15. ⟨10.1038/s41598-017-16614-9⟩

Article dans une revue hal-02626438v1

Correlating methane production to microbiota in anaerobic digesters fed synthetic wastewater

Kaushik Venkiteshwaran , Kim Milferstedt , Jérôme Hamelin , M. Fujimoto , M. Johnson et al.

Water Research, 2017, 110, pp.161-169. ⟨10.1016/j.watres.2016.12.010⟩

Article dans une revue hal-01608544v1

World Scientists’ Warning to Humanity: A Second Notice

William J. Ripple , Christopher Wolf , Thomas M. Newsome , Mauro Galetti , Mohammed Alamgir et al.

Bioscience, 2017, 67 (12), pp.1026 - 1028. ⟨10.1093/biosci/bix125⟩

Article dans une revue hal-01906049v1

Biogranules applied in environmental engineering

Kim Milferstedt , Jérôme Hamelin , Chul Park , Jinyoung Jung , Yuhoon Hwang et al.

International Journal of Hydrogen Energy, 2017, 42 (45), pp.27801-27811. ⟨10.1016/j.ijhydene.2017.07.176⟩

Article dans une revue (article de synthèse) hal-02626533v1

A single community dominates structure and function of a mixture of multiple methanogenic communities

Pawel Sierocinski , Kim Milferstedt , Florian Bayer , Tobias Grosskopf , Mark Alston et al.

Current Biology, 2017, 27 (21), pp.3390-3395.e4. ⟨10.1016/j.cub.2017.09.056⟩

Article dans une revue hal-02624588v1

Vertebrate bacterial gut diversity: size also matters

Jean-Jacques Godon , Pugazhendi Arulazhagan , Jean-Philippe Steyer , Jérôme Hamelin

BMC Ecology, 2016, 16 (1), pp.12. ⟨10.1186/s12898-016-0071-2⟩

Article dans une revue hal-02639327v1

Anaerobic digester bioaugmentation influences quasi steady state performance and microbial community

Kaushik Venkiteshwaran , Kim Milferstedt , Jérôme Hamelin , D. H. Zitomer

Water Research, 2016, 104, pp.128-136. ⟨10.1016/j.watres.2016.08.012⟩

Article dans une revue hal-01608636v1

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Stefanie Widder , Rosalind J Allen , Thomas Pfeiffer , Thomas P Curtis , Carsten Wiuf et al.

The International Society of Microbiologial Ecology Journal, 2016, 10, pp.1-12. ⟨10.1038/ismej.2016.45⟩

Article dans une revue (article de synthèse) hal-01512087v1

Bioaerosol emissions from open microalgal processes and their potential environmental impacts: what can be learned from natural and anthropogenic aquatic environments?

Bruno Sialve , Amandine Gales , Jérôme Hamelin , Nathalie Wéry , Jean-Philippe Steyer

Current Opinion in Biotechnology, 2015, 33, pp.279-286. ⟨10.1016/j.copbio.2015.03.011⟩

Article dans une revue (article de synthèse) hal-02633224v1

How to use molecular biology tools for the study of the anaerobic digestion process?

Angela Cabezas , Juliana Calabria de Araujo , Cecilia Callejas , Amandine Gales , Jérôme Hamelin et al.

Reviews in Environmental Science and Bio/technology, 2015, 14 (4), pp.1-65. ⟨10.1007/s11157-015-9380-8⟩

Article dans une revue (article de synthèse) hal-02635684v1

Adaptation of acidogenic sludge to increasing glycerol concentrations for biohydrogen production

Estela Tapia-Venegas , L. Cabrol , B. Brandhoff , Jérôme Hamelin , Eric Trably et al.

Applied Microbiology and Biotechnology, 2015, 99 (19), pp.8295 - 8308. ⟨10.1007/s00253-015-6832-6⟩

Article dans une revue hal-02637362v1

Similar PAH fate in anaerobic digesters inoculated with three microbial communities accumulating either volatile fatty acids or methane

Florence Braun , Jérôme Hamelin , Anaïs Bonnafous , Nadine Cathala-Delgenès , Jean-Philippe Steyer et al.

PLoS ONE, 2015, 10 (4), ⟨10.1371/journal.pone.0125552⟩

Article dans une revue hal-01159242v1

Nutritional stress induces exchange of cell material and energetic coupling between bacterial species

Saida Benomar , David Ranava , María Luz Cárdenas , Eric Trably , Yan Rafrafi et al.

Nature Communications, 2015, 6 (6283), 10 p. ⟨10.1038/ncomms7283⟩

Article dans une revue hal-01159245v1

Biofilm development during the start-up period of anaerobic biofilm reactors: the biofilm Archaea community is highly dependent on the support material

Frédéric Habouzit , Jérôme Hamelin , Jean-Philippe Steyer , Nicolas Bernet

Microbial Biotechnology, 2014, 7 (3), pp.257 - 264. ⟨10.1111/1751-7915.12115⟩

Article dans une revue hal-02637731v1

Only Simpson diversity can be estimated accurately from microbial community fingerprints.

Bart Haegeman , Biswarup Sen , Jean-Jacques Godon , Jérôme Hamelin

Microbial ecology, 2014, 68 (2), pp.169-72. ⟨10.1007/s00248-014-0394-5⟩

Article dans une revue hal-01190153v1

Total solid content drives hydrogen production through microbial selection during thermophilic fermentation

Jean-Charles Motte , Eric Trably , Jérôme Hamelin , Renaud R. Escudie , Anaïs Bonnafous et al.

Bioresource Technology, 2014, 166, pp.610-615. ⟨10.1016/j.biortech.2014.05.078⟩

Article dans une revue hal-02640079v1

Substrate milling pretreatment as a key parameter for Solid-State Anaerobic Digestion optimization

Jean-Charles Motte , Renaud Escudié , Jérôme Hamelin , Jean-Philippe Steyer , Nicolas Bernet et al.

Bioresource Technology, 2014, 173, pp.185-92. ⟨10.1016/j.biortech.2014.09.015⟩

Article dans une revue hal-01190161v1

Spatial distribution of microbial communities in the shallow submarine alkaline hydrothermal field of the Prony Bay, New Caledonia

Marianne Quéméneur , Méline Bes , Anne Postec , Nan Mei , Jérôme Hamelin et al.

Environmental Microbiology Reports, 2014, 6 (2014), pp.665-674. ⟨10.1111/1758-2229.12184⟩

Article dans une revue istex hal-01190159v1

New urban wastewater treatment with autotrophic membrane bioreactor at low chemical oxygen demand/N substrate ratio

Y. Yang , Geoffroy Lesage , Maialen Barret , Nicolas Bernet , Alain Grasmick et al.

Water Science and Technology, 2014, 69 (5), pp.960-965. ⟨10.2166/wst.2013.814⟩

Article dans une revue hal-02640314v1

Effect of several saponin containing plant extracts on rumen fermentation in vitro, Tetrahymena pyriformis and sheep erythrocytes

Alexandre Budan , Nicolas Tessier , Monique Saunier , Louisa Gillman , Jérôme J. Hamelin et al.

Journal of Food, Agriculture and Environment, 2013, 11 (2), pp.576-582

Article dans une revue hal-02651015v1

Two-Stage Alkaline-Enzymatic Pretreatments To Enhance Biohydrogen Production from Sunflower Stalks

Florian Monlau , Eric Trably , Abdellatif Barakat , Jérôme Hamelin , Jean-Philippe Steyer et al.

Environmental Science and Technology, 2013, 47 (21), pp.12591 - 12599. ⟨10.1021/es402863v⟩

Article dans une revue hal-02647473v1

Distribution and hydrophobic properties of Extracellular Polymeric Substances in biofilms in relation towards cohesion

M. Ras , Dominique Lefebvre , Nicolas Derlon , Jérôme J. Hamelin , Nicolas Bernet et al.

Journal of Biotechnology, 2013, 165 (2), pp.85 - 92. ⟨10.1016/j.jbiotec.2013.03.001⟩

Article dans une revue istex hal-02649958v1

Robust estimation of microbial diversity in theory and in practice

Bart Haegeman , Jérôme Hamelin , John Moriarty , Peter Neal , Jonathan Dushoff et al.

The International Society of Microbiologial Ecology Journal, 2013, 7, pp.1092-1101. ⟨10.1038/ismej.2013.10⟩

Article dans une revue hal-00859547v1

Total solids content: a key parameter of metabolic pathways in dry anaerobic digestion.

Jean-Charles Motte , Eric Trably , Renaud R. Escudie , Jérôme J. Hamelin , Jean-Philippe Steyer et al.

Biotechnology for Biofuels, 2013, 6 (1), 164 - 9 p. ⟨10.1186/1754-6834-6-164⟩

Article dans une revue hal-02650996v1

Specific inhibition of biohydrogen-producing Clostridium sp after dilute-acid pretreatment of sunflower stalks

Florian Monlau , Quentin Aemig , Eric Trably , Jérôme J. Hamelin , Jean-Philippe Steyer et al.

International Journal of Hydrogen Energy, 2013, 38 (28), pp.12273 - 12282. ⟨10.1016/j.ijhydene.2013.07.018⟩

Article dans une revue hal-02650967v1

Sub-dominant bacteria as keystone species in microbial communities producing bio-hydrogen

Yan Rafrafi , Eric Trably , Jérôme J. Hamelin , Eric Latrille , Isabelle Meynial-Salles et al.

International Journal of Hydrogen Energy, 2013, 38 (12), pp.4975 - 4985. ⟨10.1016/j.ijhydene.2013.02.008⟩

Article dans une revue hal-02649108v1

Microbial community signature of high-solid content methanogenic ecosystems.

Amel Abbassi-Guendouz , Eric Trably , Jérôme J. Hamelin , Claire Dumas , Jean-Philippe Steyer et al.

Bioresource Technology, 2013, 133, pp.256-262. ⟨10.1016/j.biortech.2013.01.121⟩

Article dans une revue hal-02651563v1

Ingénierie écologique microbienne pour la production de biohydrogène

Eric Trably , M.T. Giudici-Orticoni , S. Benomar , Eric Latrille , Isabelle Meynial-Salles et al.

Innovations Agronomiques, 2013, 26, pp.67-82. ⟨10.17180/b0b3-dy98⟩

Article dans une revue hal-02641895v1

In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis

David Halter , Florence Goulhen-Chollet , Sebastien Gallien , Corinne Casiot , Jérôme J. Hamelin et al.

The International Society of Microbiologial Ecology Journal, 2012, 6 (7), pp.1391 - 1402. ⟨10.1038/ismej.2011.198⟩

Article dans une revue hal-02645603v1

Projet CreativERU : Concept de rupture appliqué au traitement intensif et à la valorisation des eaux résiduaires urbaines. Dossier Ressources en eau, préservation et gestion

Alain Grasmick , Jérôme Hamelin

Dossiers - Agropolis, 2012, 14, pp.33-33

Article dans une revue hal-02642009v1

Inhibition of fermentative hydrogen production by lignocellulose-derived compounds in mixed cultures

Marianne Quéméneur , Jérôme Hamelin , Abdellatif Barakat , Jean-Philippe Steyer , Hélène Carrère et al.

International Journal of Hydrogen Energy, 2012, 37 (4), pp.3150 - 3159. ⟨10.1016/j.ijhydene.2011.11.033⟩

Article dans une revue istex hal-01809614v1

Improvement of RNA-SIP by pyrosequencing to identify putative 4-n-nonylphenol degraders in activated sludge

Olivier Zemb , M. Lee , M.L. Gutierrez-Zamora , Jérôme Hamelin , K. Coupland et al.

Water Research, 2012, 46 (3), pp.601-610

Article dans une revue hal-02649918v1

Carbon conversion efficiency and population dynamics of a marine algae-bacteria consortium growing on simplified synthetic digestate: First step in a bioprocess coupling algal production and anaerobic digestion

Christophe Vasseur , Gaël Bougaran , Matthieu Garnier , Jérôme J. Hamelin , Christophe Leboulanger et al.

Bioresource Technology, 2012, 119, pp.79 - 87. ⟨10.1016/j.biortech.2012.05.128⟩

Article dans une revue hal-02652108v1

Spatial variability of the functional stability of microbial respiration process: a microcosm study using tropical forest soil

Nathalie Fromin , Benjamin Porte , Robert Lensi , Jérôme Hamelin , Anne-Marie Domenach et al.

Journal of Soils and Sediments, 2012, 12 (7), pp.1030 - 1039. ⟨10.1007/s11368-012-0528-7⟩

Article dans une revue istex hal-01204209v1

Homogeneity and Synchronous Dynamics of Microbial Communities in Particulate Biofilms: from Major Populations to Minor Groups

Gaelle Gévaudan , Jérôme Hamelin , P. Dabert , J.J. Godon , N. Bernet

Microbes and environments / JSME, 2012, 27 (2), pp.142-148

Article dans une revue hal-02597169v1

Homogeneity and synchronous dynamics of microbial communities in particulate biofilms: from major populations to minor groups

Gaelle Gévaudan , Jérôme J. Hamelin , Patrick Dabert , Jean-Jacques Godon , Nicolas Bernet

Microbes and environments / JSME, 2012, 27 (2), pp.142-148. ⟨10.1264/jsme2.ME11264⟩

Article dans une revue hal-02645638v1

Changes in hydrogenase genetic diversity and proteomic patterns in mixed culture dark fermentation of mono-, di- and tri-saccharides

Marianne Quéméneur , Jérôme Hamelin , Saida Benomar , Marie-Thérèse Guidici-Orticoni , Eric Latrille et al.

International Journal of Hydrogen Energy, 2011, 36 (18), pp.11654-11665. ⟨10.1016/j.ijhydene.2011.06.010⟩

Article dans une revue istex hal-00677381v1

Influence of support material properties on the potential selection of Archaea during initial adhesion of a methanogenic consortium

Frédéric Habouzit , Gaelle Gévaudan , Jérôme J. Hamelin , Jean-Philippe Steyer , Nicolas Bernet

Bioresource Technology, 2011, 102 (5), pp.4054-4060. ⟨10.1016/j.biortech.2010.12.023⟩

Article dans une revue istex hal-02647926v1

Functional versus phylogenetic fingerprint analyses for monitoring hydrogen-producing bacterial populations in dark fermentation cultures

Marianne Quéméneur , Jérôme Hamelin , Eric Latrille , Jean-Philippe Steyer , Eric Trably

International Journal of Hydrogen Energy, 2011, 36 (6), pp.3870 - 3879. ⟨10.1016/j.ijhydene.2010.12.100⟩

Article dans une revue istex hal-01809618v1

Development and application of an enzymatic and cell flotation treatment for the recovery of viable microbial cells from environmental matrices such as anaerobic sludge

Florence Braun , Jérôme J. Hamelin , Gaelle Gévaudan , Dominique Patureau

Applied and Environmental Microbiology, 2011, 77 (24), pp.8487 - 8493. ⟨10.1128/AEM.05549-11⟩

Article dans une revue hal-02652112v1

Selective microbial aerosolization in biogas demonstrated by quantitative PCR

Marina Moletta-Denat , Valérie Bru-Adan , Jean Philippe J. P. Delgenes , Jérôme J. Hamelin , Nathalie Wéry et al.

Bioresource Technology, 2010, 101 (19), pp.7252-7257. ⟨10.1016/j.biortech.2010.04.035⟩

Article dans une revue istex hal-02662277v1

Development and application of a functional CE-SSCP fingerprinting method based on [Fe–Fe]-hydrogenase genes for monitoring hydrogen-producing Clostridium in mixed cultures

Marianne Quéméneur , Jérôme Hamelin , Eric Latrille , Jean-Philippe Steyer , Eric Trably

International Journal of Hydrogen Energy, 2010, 35 (24), pp.13158 - 13167. ⟨10.1016/j.ijhydene.2010.07.076⟩

Article dans une revue istex hal-01809619v1

Distribution of Pseudomonas populations harboring phlD or hcnAB biocontrol genes is related to depth in vineyard soils

Miroslav Svercel , Jérôme Hamelin , Brion Duffy , Yvan Moënne-Loccoz , Geneviève Défago

Soil Biology and Biochemistry, 2010, 42 (3), pp.466-472. ⟨10.1016/j.soilbio.2009.11.030⟩

Article dans une revue halsde-00525757v1

Spatial and temporal variations of the bacterial community in the bovine digestive tract

R. J. Michelland , Valérie Monteils , Asma Zened , Sylvie Combes , Laurent Cauquil et al.

Journal of Applied Microbiology, 2009, 107, pp.1642-1650. ⟨10.1111/j.1365-2672.2009.04346.x⟩

Article dans une revue hal-02655667v1

DNA reassociation kinetics and diversity indices : richness is not rich enough

Bart Haegeman , Dimitri Vanpeteghem , Jean-Jacques Godon , Jérôme J. Hamelin

Oikos, 2008, 117 (2), pp.177-181. ⟨10.1111/j.2007.0030-1299.16311.x⟩

Article dans une revue istex hal-02660651v1

Structural divergence of bacterial communities from functionally similar laboratory-scale vermicomposts assessed by PCR-CE-SSCP

Biswarup Sen , Jérôme J. Hamelin , Valérie Bru-Adan , Jean-Jacques Godon , T.S. Chandra

Journal of Applied Microbiology, 2008, 105 (6), pp.2123-2132. ⟨10.1111/j.1365-2672.2008.03911.x⟩

Article dans une revue hal-02668103v1

How elevated pCO2 modifies total and metabolically active bacterial communities in the rhizosphere of two perennial grasses grown under field conditions

Marylin Jossi , Nathalie Fromin , Sonia Tarnawski , Florian Kohler , François Gillet et al.

FEMS Microbiology Ecology, 2006, 55 (3), pp.339-350. ⟨10.1111/j.1574-6941.2005.00040.x⟩

Article dans une revue hal-00442595v1

Soil microbial community changes in wooded mountain pastures due to simulated effects of cattle grazing

Florent Kohler , Jérôme J. Hamelin , F. Gillet , J.M. Gobat , A. Buttler

Plant and Soil, 2005, 278 (1-2), pp.327-340. ⟨10.1007/s11104-005-8809-1⟩

Article dans une revue hal-02681447v1

Examination of Gould's modified S1 (mS1) selective medium and Angle's non-selective medium for describing the diversity of Pseudomonas spp. in soil and root environments

Sonia Tarnawski , Jérôme Hamelin , Laurent Locatelli , Michel Aragno , Nathalie Fromin

FEMS Microbiology Ecology, 2003, 45 (2), pp.97-104. ⟨10.1016/S0168-6496(03)00130-2⟩

Article dans une revue hal-02126966v1

nifH gene diversity in the bacterial community associated with the rhizosphere of Molinia coerulea, an oligonitrophilic perennial grass

Jérôme Hamelin , Nathalie Fromin , Sonia Tarnawski , Sylvie Teyssier-Cuvelle , Michel Aragno

Environmental Microbiology, 2002, 4 (8), pp.477-481. ⟨10.1046/j.1462-2920.2002.00319.x⟩

Article dans une revue hal-02126961v1

Specific PCR Amplification for the Genus Pseudomonas Targeting the 3′ Half of 16S rDNA and the Whole 16S–23S rDNA Spacer

Laurent Locatelli , Sonia Tarnawski , Jérôme Hamelin , Pierre Rossi , Michel Aragno et al.

Systematic and Applied Microbiology, 2002, 25 (2), pp.220-227. ⟨10.1078/0723-2020-00110⟩

Article dans une revue hal-02126959v1

Localization of Casuarina-infective Frankia near Casuarina cunninghamiana trees in Jamaica

J. O. Dawson , J. F. Zimpfer , G. J. Kennedy , C. A. Smyth , J. Hamelin et al.

Canadian Journal of Botany, 1999, 77 (9), pp.1248-1256. ⟨10.1139/b99-063⟩

Article dans une revue hal-02868626v1

Co-evolution between Frankia populations and host plants in the family Casuarinaceae and consequent patterns of global dispersal

Pascal Simonet , Elisabeth Navarro , C. Rouvier , P. Reddell , J. Zimpfer et al.

Environmental Microbiology, 1999, 1 (6), pp.525-533. ⟨10.1046/j.1462-2920.1999.00068.x⟩

Article dans une revue istex hal-02868612v1

Microbial composition of inoculum influences physical properties of photogranule

Clément Billery , Gilberte Gaval , Kim Milferstedt , Jérôme Hamelin

1st International Conference on Photogranule, IHE UNESCO; INRAE; UMASS, Sep 2025, Delft (Netherlands), Netherlands

Communication dans un congrès hal-05601539v1

Oxygenic photogranules change metabolism when exposed to shifts in carbon and light availabilities

Oriane Della-Negra , Anaïs Séguéla , Camille Guilmineau , Roselyne Gautier , Cécile Canlet et al.

11. Microbial Ecology and Water Engineering Conference, Jun 2025, Atlanta, United States

Communication dans un congrès hal-05179195v1

Metabolic Responses of Oxygenic Photogranules to Carbon and Light Fluctuations: Insights from Longitudinal Metabolomics

Oriane Della-Negra , Anaïs Séguéla , Camille Guilmineau , Roselyne Gautier , Cécile Canlet et al.

1. International Conference on Photogranules, Sep 2025, Delft, Netherlands

Communication dans un congrès hal-05313754v1

Chromatic adaptation of cyanobacterial strains isolated from photogranules exposed to light of different colors

Jérôme Hamelin , Antonin Reignaud , Kim Milferstedt

1. International Conference on Novel PhotoRefineries for Resource Recovery (PHOTOREFINERIES 2024), Université de Valladolid, Espagne, Sep 2024, Valladolid, Spain

Communication dans un congrès hal-04795195v1

Multi-scale structuring of biologically active aggregates used in biotechnology: photogranules

Kim Milferstedt , Jérôme Hamelin

13. Colloque Sciences et Technologies des Poudres (STP 2024), Société Française de Génie des Procédés, Jun 2024, Montpellier, France

Communication dans un congrès hal-04823867v1

Utilisation de l’hétérogénéité multi-échelle des agrégats bactériens pour piloter les procédés à photogranules

Kim Milferstedt , Jérôme Hamelin

MICROBES 2024 Bienvenue chez les Microbes, Société Française de Microbiologie, Oct 2024, Lille, France

Communication dans un congrès hal-04823788v1

High Biological Methane Potential of photosynthetic granules when grown in SBR

Sandra Galea-Outón , Kim Milferstedt , Jérôme Hamelin

7. International Symposium on Environmental Biotechnology and Engineering (7ISEBE), May 2023, Marseille, France

Communication dans un congrès hal-04152033v1

Accessibility and complexity of nutrients present in residual microalgal-bacterial biomass for soil conditioning

Enrique Romero-Frasca , Sandra Galea-Outón , Germán Buitrón , Julie Jimenez , Jérôme Hamelin et al.

4. International Conference for Bioresource Technology for Bioenergy, Bioproducts & Environmental Sustainability, May 2023, Lake Garda, Italy

Communication dans un congrès hal-04152108v1

Soil Microbial Community and Pathogens Variation during Lettuces Drip Irrigation by Raw And Reclaimed Wastewaters

Vincent Moulia , Nassim Ait-Mouheb , Geoffroy Lesage , Jérôme Hamelin , Nathalie Wery et al.

13. IWA International Conference On Water Reclamation and Reuse, IWA, Jan 2023, Chennai, India

Communication dans un congrès hal-03950223v1

Modification of microbial community structures in soil receiving wastewater of increasing qualities during irrigation period

Vincent Moulia , Nassim Ait Mouheb , Geoffroy Lesage , Jérôme Hamelin , Nathalie Wery et al.

7. International Symposium on Environmental Biotechnology and Engineering (7ISEBE), May 2023, Marseille, France

Communication dans un congrès hal-04151931v1

A quantitative meta-analysis of hygienization during anaerobic digestion

Laura Alvarez-Fraga , Felipe Guilayn , Malo Sanglier , Gabriel Capson-Tojo , Diana Garcia-Bernet et al.

10. IWA Microbial Ecology and Water Engineering Specialist Conference, Sep 2023, Brisbane, Australia. ⟨10.17180/zssg-c544⟩

Communication dans un congrès hal-04152131v1

Impact of treated wastewater on soil bacterial communities

Marc Heran , Geoffroy Lesage , Vincent Moulia , Nassim Ait-Mouheb , Nathalie Wéry et al.

Francofilt 2023 : Separative Techniques Facing the Challenges of Sustainable Development, Faculté des sciences et Techniques de Fès, May 2023, Fès, Morocco

Communication dans un congrès hal-04822753v1

Ecologically engineering methanotrophic photogranules

Anissa Sukma Safitri , Jérôme Hamelin , Roald Kommedal , Kim Milferstedt

13. IWA Wastewater Ponds and Algal Technologies Conference, IWA, Jul 2022, Melbourne, Australia

Communication dans un congrès hal-04151639v1

Chromatic adaptation of cyanobacteria exposed to different light spectra: an engineering tool to direct pigment production

Jérôme Hamelin , Antonin Reignaud , Kim Milferstedt

42. Frontier Scientists Workshop: Environmental Bio-Technology Workshop for Reducing GHGs Emissions, Korean Academy of Science and Technology, Nov 2022, Narbonne, France

Communication dans un congrès hal-04152281v1

Properties of cyanobacterial strains determine the spatial development of a complex phototrophic microbial community

Kim Milferstedt , Esmee Joosten , Jérôme Hamelin

42. Frontier Scientists Workshop: Environmental Bio-Technology Workshop for Reducing GHGs Emissions, Korean Academy of Science and Technology, Nov 2022, Narbonne, France

Communication dans un congrès hal-04152290v1

Engineering light-driven microbial syntrophies for the generation of value-added products from waste

Kim Milferstedt , Jérôme Hamelin

Theo Murphy scientific meeting “Microbial ecology for engineering biology”, the Royal Society UK, Mar 2022, Steventon, United Kingdom

Communication dans un congrès hal-04152190v1

Triangular syntrophic interactions in methanotrophic photogranules

Kim Milferstedt , Jérôme Hamelin

28th Frontier Scientists Workshop “Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice”, The Korean Academy of Science and Technology, Nov 2020, Online, France

Communication dans un congrès hal-03280523v1

Microscale activities of individual photogranules as a function of light and carbon availabilities

Jérôme Hamelin , Hicham Ouazaite , Elie Desmond-Le Quéméner , Kim Milferstedt

28th Frontier Scientists Workshop “Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice”, The Korean Academy of Science and Technology, Nov 2020, Online, South Korea

Communication dans un congrès hal-03033341v1

Synthetic consortium of methanotrophy and phototrophy for biological methane conversion

Jeong-Geol Na , Hando Ko , Jérôme Hamelin , Kim Milferstedt

28. online Frontier Scientists Workshop “Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice”, Nov 2020, Online, France

Communication dans un congrès hal-03739394v1

Recovery of value-added molecules from wastewater, example oxygenic photogranules

Kim Milferstedt , Ahlem Filali , Jérôme Hamelin

Convention of the Korean Civil Engineering Society 2019, Oct 2019, Pyungchang, South Korea

Communication dans un congrès hal-02917621v1

Mapping the biological activity of a fluffy oxygenic photogranule

Hicham Ouazaite , Kim Milferstedt , Jérôme Hamelin , Elie Desmond-Le Quéméner

9ème colloque annuel du Réseau National Biofilm, Dec 2019, Nancy, France

Communication dans un congrès hal-02917616v1

Oxygenic photogranules: from ecology to wastewater treatment

Kim Milferstedt , Esmee Joosten , Hicham Ouazaite , Elie Desmond-Le Quéméner , Jérôme Hamelin

MicrobiOccitanie 2019 - Rencontre des Microbiologistes Région Occitanie, Région Occitanie. FRA., Feb 2019, Montpellier, France

Communication dans un congrès hal-02791633v1

Naturally occuring cyanobacteria can form oxygenic photogranules to treat wastewater

Esmee Joosten , Kim Milferstedt , Jérôme Hamelin

11. International conference on toxic cyanobacteria “Learning from the past to predict the future”, May 2019, Cracovie, Poland

Communication dans un congrès hal-02735765v1

Optimizing the use of oxygenic photogranules for wastewater treatment in sequencing batch reactors

Himanshu Kumar Khuntia , Kim Milferstedt , Jérôme Hamelin , Michel Torrijos

Bridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France

Communication dans un congrès hal-02786681v1

Deciphering the role of cyanobacteria for photogranulation through individual based modeling

Hicham Ouazaite , Esmee Joosten , Elie Desmond-Le Quéméner , Kim Milferstedt , Jérôme Hamelin

Bridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France

Communication dans un congrès hal-02786936v1

Experimental coalescence of microbial communities in anaerobic digesters

Jérôme Hamelin , Kim Milferstedt

Bridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France

Communication dans un congrès hal-02786680v1

Substrate complexity favors community coalescence after mixing of methane-producing communities

Kim Milferstedt , Diane Plouchart , Pawel Sierocinski , Angus Buckling , Jérôme Hamelin

ISME17 - 17. International Symposium on Microbial Ecology, International Society for Microbial Ecology (ISME). Wageningen, INT., Aug 2018, Leipzig, Germany

Communication dans un congrès hal-02737121v1

Cyanobacterial abundance drives photogranulation

Kim Milferstedt , Esmee Joosten , Jérôme Hamelin

IWA Biofilms: Granular Sludge Conference, Delft University of Technology (DTU). NLD. International Water Association (IWA), INT., Mar 2018, Delft, Netherlands

Communication dans un congrès hal-01799544v1

Présentation du LAMACs : Lab-scale Automated and Multiplexed Anaerobic Chemostat system

Jérôme Hamelin

Journées Nutrition et Ecosystèmes Microbiens - NEM 2018, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., May 2018, Narbonne, France

Communication dans un congrès hal-02790981v1

Exploring minimum conditions allowing photogranulation

Esmee Joosten , Hicham Ouazaite , Kim Milferstedt , Jérôme Hamelin

Bridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France

Communication dans un congrès hal-02786939v1

Ecological engineering of granular phototrophic ecosystems

Kim Milferstedt , Jérôme Hamelin

Bridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France

Communication dans un congrès hal-02791635v1

Into the background of 16S rDNA sequencing data: looking for ‘rare’ sequences of pathogenic bacteria from DNA of biogas plant digestates

Géraldine Maynaud , Anne-Marie Pourcher , Jean-Jacques Godon , Jérôme Hamelin , Nathalie Wéry

NEM seminar (Nutrition et Ecosystèmes Microbiens), May 2017, Saint Pee sur Nivelle, France

Communication dans un congrès hal-02785337v1

ENgineerInG interactions in Methanogenic communities at the Ecosystem level - ENIGME

Kim Milferstedt , Jérôme Hamelin , Benoît Jaillard , Jérôme Harmand , Jean-Jacques Godon

MEM days (Meta’omics of the microbial ecosystems), Jan 2017, Paris, France

Communication dans un congrès hal-02787610v1

Ecological engineering for piloting bioprocesses

Kim Milferstedt , Jérôme Hamelin

Environmental Biotechnology Workshop, Inha University. KOR., Oct 2017, Incheon, South Korea

Communication dans un congrès hal-02785336v1

Formation of oxygenic photo-granules and its application for aeration-free wastewater treatment

Chul Park , Ahmed S Abouhend , Wenye Camilla Kuo-Dahab , Caitlyn Butler , Kim Milferstedt et al.

WEFTEC 2017 - 90. annual Water Environment Federation’s Annual Technical Exhibition and Conference, Water Environment Federation (WEF). USA., Sep 2017, Chicago, United States

Communication dans un congrès hal-02737810v1

Replication of experiments in anaerobic digestion: simpler, greater and easier than you had ever hoped

Jérôme Hamelin , Diane Plouchart , Guillaume Guizard , Eric Latrille , Kim Milferstedt

15. IWA World Conference on Anaerobic Digestion (AD15), International Water Association (IWA). INT., Nov 2017, Beijing, China

Communication dans un congrès hal-02733779v1

Ecological engineering of oxygenic photogranules for biotechnological applications

Kim Milferstedt , Jérôme Hamelin

Asia Biohydrogen and Biorefinery Symposium (ABBS 2016), Oct 2016, Jeju, South Korea

Communication dans un congrès hal-02792673v1

Blending complex ecosystems: do microbial diversity or microbial interactions matter?

Jérôme Hamelin

NEM seminar (Nutrition et Ecosystèmes Microbiens), May 2016, Jouy-en-Josas, France

Communication dans un congrès hal-02794096v1

Multiplexed chemostats: a smart way for serious testing of ecological theory

Diane Plouchart , Kim Milferstedt , Eric Latrille , Guillaume Guizard , Jérôme Hamelin

16. International Symposium on Microbial Ecology - ISME16, International Society for Microbial Ecology (ISME). INT., Aug 2016, Montreal, Canada

Communication dans un congrès hal-02739627v1

Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystems

Marianne de Paepe , Eric Dugat-Bony , Jérôme Hamelin , Mahendra Mariadassou , Kim Milferstedt et al.

Phages On Marseille, Nov 2016, Marseille, France. pp.1

Communication dans un congrès hal-01531724v1

Photogranules may shake sewage treatment up

Kim Milferstedt , Chul Park , Jérôme Hamelin

16. International Symposium on Microbial Ecology - ISME16, International Society for Microbial Ecology (ISME). INT., Aug 2016, Montreal, Canada

Communication dans un congrès hal-02739957v1

Filamentous cyanobacteria in granular biofilms containing microalgae and bacteria

Kristie Stauch-White , Camilla Kuo-Dahab , Kim Milferstedt , Jérôme Hamelin , Chul Park et al.

249. American Chemical Society National Meeting & Exposition, American Chemical Society (ACS). USA., Mar 2015, Denver, United States

Communication dans un congrès hal-02742286v1

Manager les ressources microbiennes impliquées dans la digestion anaérobie

Marina Moletta-Denat , Jérôme Hamelin , Kim Milferstedt , Eric Trably

Journées Recherche Industrie Biogaz-Méthanisation (JRI2015), Institut National de Recherche en Sciences et Technologies pour l'Environnement et l'Agriculture (IRSTEA). Rennes, FRA., Feb 2015, Rennes, France

Communication dans un congrès hal-01163005v1

Dynamique des communautés algales et bactériennes durant la colonisation de lagunes ouvertes : lien avec la communauté aéroportée

Amandine Gales , Bruno Sialve , Jérôme Hamelin , Jean-Philippe Steyer , Nathalie Wéry

7. Colloque AFEM, Association Francophone d'Ecologie Microbienne (AFEM). FRA., Nov 2015, Anglet, France

Communication dans un congrès hal-01512108v1

Mixing ecosystems during start-up of anaerobic digesters improves final performance

Jérôme Hamelin , Kim Milferstedt

International Conference on Anaerobic Digestion. AD Technology and Microbial Ecology for Sustainable Development (ADTech2015), Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Feb 2015, Chiang Mai, Thailand

Communication dans un congrès hal-01163002v1

Integration of microalgae and anaerobic digestion within a biorefinery approach for reuse and/or recovery of human residues

Nicolas Bernet , Amandine Gales , Jerome Hamelin , Arnaud Helias , Eric Latrille et al.

1. International Seminar on Algal Technologies for Wastewater Treatment and Resource Recovery, United Nations Educational Scientific and Cultural Organization (UNESCO). INT., Apr 2015, Delft, Netherlands

Communication dans un congrès hal-02742451v1

Neglecting the inoculum of anaerobic digesters: a missed opportunity?

Jean-Jacques Godon , Kim Milferstedt , Jérôme Hamelin , Jean-Philippe Steyer

14. World Congress on Anaerobic Digestion (AD14), International Water Association (IWA). INT., Nov 2015, Viña del Mar, Chile

Communication dans un congrès hal-02739859v1

Keynote: How to use molecular biology tools for the study of anaerobic digestion process?

Angela Cabezas , Juliana Calabria de Araujo , Cecilia Callejas , Amandine Gales , Jérôme Hamelin et al.

14. World Congress on Anaerobic Digestion (AD14), International Water Association (IWA). INT., Nov 2015, Viña del Mar, Chile

Communication dans un congrès hal-02740576v1

Diversity effects explain overyielding in assembled anaerobic foodwebs

Kim Milferstedt , Jérôme Hamelin

15. International Symposium on Microbial Ecology ISME 15, Aug 2014, Seoul, South Korea

Communication dans un congrès hal-02739651v1

The role of microbial diversity in ecosystem functioning : More than the sum of its part

Jérôme Hamelin

Séminaire à l’Université Catholique Pontificale de Valparaiso (PUCV), Pontificia Universidad Católica de Valparaíso (PUCV). Valparaiso, CHL., Dec 2014, Valparaiso, Chile

Communication dans un congrès hal-02792012v1

Dark fermentation of lignocellulosic biomass: byproducts of dilute acid hydrolysis of sunflower stalks provoke a metabolic shift from hydrogen/acetate/butyrate to lactate/ethanol

Florian Monlau , Eric Trably , Jérôme Hamelin , Jean-Philippe Steyer , Hélène Carrère

Réunion du réseau COST EUBis, Jan 2014, Toulouse, France

Communication dans un congrès hal-02795644v1

Engineering and managing microbial ecosystems to obtain and maintain a desired process performance – Ecological (and molecular) approaches for biotechnological questions

Kim Milferstedt , Jérôme Hamelin

Seminar at Korean Institute for Energy Research, Korean Institute for Energy Research (KIER). Daejon, KOR., Aug 2014, Daejon, South Korea

Communication dans un congrès hal-02792015v1

Robust estimation of phylogenetic diversity: steer clear of rare species

Thibault Latrille , Bart Haegeman , Jérôme Hamelin

Bioinformatique pour la Génomique Environnementale (BGE2014), May 2014, Lyon, France

Communication dans un congrès hal-02739285v1

Recycling anaerobic digestion effluents in microalgae culture

Enrica Uggetti , Bruno Sialve , Eric Latrille , Jérôme Hamelin , Jean-Philippe Steyer

Young Algaeneers Symposium (YAS2014), Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Apr 2014, Montpellier, France

Communication dans un congrès hal-02739570v1

Is performance of anaerobic digestion dictated by the inoculum and traceable by bioindicators?

Jérôme Hamelin , Valérie Bru-Adan , Jean-Jacques Godon , Kim Milferstedt

15. International Symposium on Microbial Ecology ISME 15, Aug 2014, Seoul, South Korea

Communication dans un congrès hal-02741657v1

How can we best engineer and manage microbial ecosystems to obtain and maintain a desired process performance and stability?

Kim Milferstedt , Jean-Jacques Godon , Jérôme Hamelin

Réunion annuelle du réseau INRA Nutrition et Ecosystèmes Microbiens (NEM), Apr 2014, Clermont-Ferrand, France

Communication dans un congrès hal-02792043v1

Estimation of Diversity: what we WANT and what we CAN estimate

Jérôme Hamelin

Seminar at Korean Institute for Energy Research (KIER), Korean Institute for Energy Research (KIER). Daejon, KOR., Aug 2014, Daejon, South Korea

Communication dans un congrès hal-02792011v1

Combined alkaline- enzymatic pretreatments with sunflower stalks enhance biohydrogen production

Florian Monlau , Eric Trably , Abdellatif Barakat , Jérôme Hamelin , Jean-Philippe Steyer et al.

BioH2 2013, Aug 2013, Montreal, Canada

Communication dans un congrès hal-02802920v1

Structuration spatiale des communautés microbiennes au cours de la dégradation et de la conversion de la lignocellulose en biogaz

Jean-Charles Motte , Renaud R. Escudie , Jean-Philippe Steyer , Jérôme J. Hamelin , Nicolas Bernet et al.

Journées thématiques du Réseau National Biofilm, Les Biofilms, Remue-Ménage aux Interfaces, Université de Pau et des Pays de l'Adour (UPPA). FRA., Nov 2013, Pau, France

Communication dans un congrès hal-02805556v1

Biological control of microbial communities producing biohydrogen

Eric Trably , Jérôme J. Hamelin , Eric Latrille , Yan Rafrafi , Isabelle Meynial-Salles et al.

BioH2 2013, Aug 2013, Montreal, Canada

Communication dans un congrès hal-02809567v1

New urban wastewater treatment with Autotrophic Membrane Bioreactor (AutoMBR) at low COD/N substrate ratio

Yu Yang , Geoffroy Lesage , Maialen Barret , Nicolas Bernet , Alain Grasmick et al.

7. IWA Specialised Membrane Technology Conference and Exhibition for Water and Wastewater Treatment and Reuse, International Water Association (IWA). INT., Aug 2013, Toronto, Canada

Communication dans un congrès hal-02808462v1

Acclimation of halophilic microbial communities from anaerobic sediments in continuous anaerobic bioreactors

Alexis Mottet , Frédéric Habouzit , Jérôme J. Hamelin , Jean-Philippe Steyer

13. World Congress on Anaerobic Digestion: Recovering (bio) Resources for the World. AD13, International Water Association (IWA). IWA Anaerobic Digestion Specialist Group, INT., Jun 2013, Santiago de Compostela, Spain. 171 p

Communication dans un congrès hal-02745503v1

Utilisation de facteurs biotiques de contrôle d’écosystèmes fermentaires

Eric Trably , Yan Rafrafi , Jérôme J. Hamelin , Saida Benomar , Isabelle Meynial Salles et al.

9ème Congrès National de la Société Française de Microbiologie, Société Française de Microbiologie (SFM). FRA., Feb 2013, Lille, France

Communication dans un congrès hal-02750289v1

Devenir de perturbateurs endocriniens et suivi de leur activité au cours de la digestion anaérobie de boues urbaines

Florence Braun , N. Delgenes , Nicolas Creusot , Selim Ait-Aissa , Karyn Le Menach et al.

International conference PNRPE 2012 "Recent advances on the environmental and health effects of endocrine disrupters", Dec 2012, Paris, France

Communication dans un congrès ineris-00971108v1

Avancement du projet CreativERU

Alain Grasmick , Mathieu Sperandio , Jérôme Hamelin , Juan Ochoa

7ème Journées Ecotechnologies, Nov 2012, Montpellier, France

Communication dans un congrès hal-02810250v1

How does community structure affect performance of ecosystem function ?

Kim Milferstedt , Jérôme Hamelin , Jean-Jacques Godon

Journées des microbiologistes de l’INRA, Institut National de Recherche Agronomique (INRA). UAR Département Microbiologie et Chaîne Alimentaire (1194)., Nov 2012, Isle-sur-la-Sorgue, France

Communication dans un congrès hal-02744895v1

Use of biotic factors to stabilize or improve the fermentative hydrogen production in mixed cultures

Yan Rafrafi , Marianne Quemeneur , Eric Trably , Eric Latrille , Jérôme J. Hamelin et al.

19. World Hydrogen Energy Conference - WHEC 2012, Canadian Hydrogen and Fuel Cell Association. CAN., Jun 2012, Toronto, Canada

Communication dans un congrès hal-02744913v1

Rôle des matériaux-supports sur la mise en place d’un biofilm. Impact sur le démarrage d’un réacteur anaérobie

Frédéric Habouzit , Gaelle Gévaudan , Jérôme Hamelin , Jean-Philippe Steyer , Nicolas Bernet

5. Journées Thématiques, Les biofilms au service des biotechnologies, Bioénergies, Agro-alimentaire, Environnement, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jan 2012, Narbonne, France

Communication dans un congrès hal-02746113v1

Chemical and toxicological assessments of anaerobic digesters removing EDCs

Florence Braun , N. Delgenes , Nicolas Creusot , Selim Ait-Aissa , Karyn Le Menach et al.

International conference PNRPE 2012 "Recent advances on the environmental and health effects of endocrine disrupters", Dec 2012, Paris, France

Communication dans un congrès ineris-00971107v1

Rarity and the problem of measuring diversity

Bart Haegeman , Jérôme Hamelin , John Moriarty , Peter Neal , Jonathan Dushoff et al.

14. International Symposium of Microbial Ecology (ISME14) "The Power of the Small", International Society for Microbial Ecology (ISME). INT., Aug 2012, Copenhague, Denmark

Communication dans un congrès hal-01161658v1

Organic micropollutants degradation under anaerobic mesophilic condition with respect to the inoculum origin

Florence Braun , Jérôme J. Hamelin , Jean-Philippe Steyer , Dominique Patureau

1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany

Communication dans un congrès hal-02746629v1

Impact of hydraulic retention time (HRT) on biofilm development: molecular analysis and modelling of microbial competition

Adeline Caylet , Renaud R. Escudie , Jérôme J. Hamelin , Doris Brockmann , Nicolas Bernet

IWA Biofilm Conference 2011 Processes in Biofilms, Oct 2011, Shanghai, China

Communication dans un congrès hal-02744610v1

How animals can help us on anaerobic digestion? The microbial and process engineering points of view

Jean-Jacques J.-J. Godon , Laure L. Arcemisbehere , Jérôme J. Hamelin , Renaud Escudie Escudié , Théodore T. Bouchez et al.

1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany. KL3-2 page 18

Communication dans un congrès hal-01000584v1

Major role of sub-dominant bacteria in mixed cultures producing biohydrogen by dark fermentation

Yan Rafrafi , Eric Trably , Eric Latrille , Jérôme J. Hamelin , Marie-Thérèse Guidici-Orticoni et al.

1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany

Communication dans un congrès hal-02745801v1

Improvement of RNA-SIP by pyrosequencing to identify putative 4-n-nonylphenol degraders in activated sludge

Olivier Zemb , Ml Guitierrez-Zammora , M. Lee , H. Chong , Jérôme Hamelin et al.

Colloque Génomique Environnementale Lyon 2011, Nov 2011, Lyon, France

Communication dans un congrès hal-02809518v1

Influence of total solids on bacterial and archaeal communities in semi-dry and dry anaerobic digestion

Amel Abbassi , Eric Trably , Jérôme J. Hamelin , Claire Dumas , Jean Philippe J. P. Delgenes et al.

1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany

Communication dans un congrès hal-02746311v1

Effects of lignocellulose-derived compounds on fermentative hydrogen-producing mixed cultures

Marianne Quéméneur , Abdellatif Barakat , Eric Trably , Jérôme J. Hamelin , Jean-Philippe Steyer et al.

1. International Conference on Biogas Microbiology, Sep 2011, Leipzig, Germany

Communication dans un congrès hal-02745239v1

The dynamics of diversity of an activated sludge in artificially coupled microcosms mimicking ecosystems with increasing dispersal

Jérôme Hamelin , Matthieu Bueche , Jean-Philippe Steyer , Jean-Jacques Godon

IWA conference on Microbes in Wastewater & Waste Treatment, Bioremediation and Energy Production (MWT 2011, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jan 2011, Goa, India

Communication dans un congrès hal-02809882v1

Ecosystèmes en microplaques

Jérôme Hamelin , Jean-Jacques Godon

Réunion annuelle du réseau INRA Nutrition et Ecosystèmes Microbiens (NEM), Feb 2011, Nouzilly, France

Communication dans un congrès hal-02802924v1

Influence of support material properties on the adhesion and growth as a biofilm of a methanogenic consortium

Frédéric Habouzit , Gaelle Gévaudan , Jérôme J. Hamelin , Jean-Philippe Steyer , Nicolas Bernet

12th World Congress on anaerobic digestion, Oct 2010, Guadalajara, Mexico

Communication dans un congrès hal-02756550v1

Influence of total solid concentration on anaerobic digestion : from wet to dry technology

Amel Abbassi-Guendouz , Eric Trably , Claire Dumas , Jérôme J. Hamelin , Jean Philippe J. P. Delgenes et al.

Venice 2010 - Third International Symposium on Energy from Biomass and Waste, Nov 2010, Venise, Italy

Communication dans un congrès hal-02751137v1

Diversity and the neutral chemostat: Experiment

Jérôme J. Hamelin

ESF Workshop on Theoretical Microbial Ecology, Feb 2008, Glasgow, United Kingdom

Communication dans un congrès hal-02812892v1

Diversity of the nitrate reductase genes in the Pseudomonas genus

L. Roussel-Delif , Sonia Tarnawski , Jérôme Hamelin , Laurent Philippot , Michel Aragno et al.

1. FEMS congress of European microbiologists, Jun 2003, Ljubljana, Slovenia

Communication dans un congrès hal-02761119v1

Influencce of elevated atmospheric pCO2 on the culturable nitrate-dissimilating Pseudomonas and their nitrate reductases in the rhizosphere of perennial grasses

L. Roussel-Delif , Sonia Tarnawski , Jérôme Hamelin , Laurent Philippot , Michel Aragno et al.

International symposium : structure and function of soil microbiota, Sep 2003, Marburg, Germany

Communication dans un congrès hal-02763171v1

Inoculating the microbiota for functional control - a seemingly impossible undertaking, a reflection on deadlocks

Jean-Jacques Godon , Kim Milferstedt , Jérôme Hamelin

19. International Symposium on Microbial Ecology (ISME19), Aug 2024, Cape Town, South Africa. 2024

Poster de conférence hal-04795112v1

Développement d’un protocole de co-extractions transcriptomiques et métabolomiques pour la caractérisation des photogranules oxygéniques

Anaïs Séguéla , Roselyne Gautier , Jérôme Hamelin , Kim Milferstedt , Rémi Servien et al.

16. Journées du RFMF 2024, Jun 2024, Saint-Malo, France

Poster de conférence hal-04613787v1

Suivi des communautés bactériennes endémiques et des pathogènes lors du retour au sol des eaux usées traitées

Vincent Moulia , Nassim Ait Mouheb , Geoffroy Lesage , Jérôme Hamelin , Nathalie Wery et al.

18. Congrès de la Société Française de Génie des Procédés (SFGP 2022) « Sciences et Solutions technologiques pour la Transition », Nov 2022, Toulouse, France

Poster de conférence hal-04151620v1

Effect of shear stress on the growth of a native microalgal-bacteria consortium in a pilot scale raceway treating urban wastewater

Gaetano Zuccaro , Robert van Lis , Denis Loisel , Anaïs Bonnafous , Jordan Seira et al.

IWA Biofilm : Granular Sludge Conference, IWAlgae2019, Jul 2019, Valladolid, Spain

Poster de conférence hal-02917632v1

Is performance of anaerobic digestion dictated by the inoculum and traceable by bioindicators ?

Kim Milferstedt , Valérie Bru-Adan , Jean-Jacques Godon , Jérôme Hamelin

Gordon Research Conference “Applied & Environmental Microbiology: Microbes that Influence, Sustain and Protect Our Planet”, Jul 2015, South Hadley, United States. 2015

Poster de conférence hal-02792455v1

Dynamic of algal and bacterial communities during colonization of open-water ponds: link with atmospheric microbial community

Amandine Gales , Bruno Sialve , Jérôme Hamelin , Jean-Philippe Steyer , Nathalie Wéry

2. EMBO Conference on Aquatic Microbial Ecology (SAME-14), Aug 2015, Uppsala, Sweden. 2015

Poster de conférence hal-02738728v1

Dynamique et structure des communautés microbiennes dans des bioréacteurs à membrane de nitrification

Maialen Barret , Yu Yang , Gaëlle Santa-Catalina , Nicolas Bernet , Jean-Jacques Godon et al.

6. Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) "Microbiologie Environnementale : du Gène à l’Ecosystème", Oct 2013, Parent, France. , 2013

Poster de conférence hal-02750245v1

Distribution spatiale des communautés microbiennes du système hydrothermal alcalin de la baie de Prony, Nouvelle Calédonie

Marianne Quemeneur , Méline Bes , Anne Postec , Nan Mei , Jérôme Hamelin et al.

6. Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) "Microbiologie Environnementale : du Gène à l’Ecosystème", Oct 2013, Parent, France. 2013

Poster de conférence hal-02748380v1

How to choose the best inoculum for starting an anaerobic digester?

Kim Milferstedt , Aline Sandre , Jérôme Hamelin , Jean-Jacques Godon

14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012

Poster de conférence hal-02744473v1

Human microbiota drives indoor air microbes

Carole Gaüzere , Marina Moletta-Denat , Jérôme Hamelin , Jean-Jacques Godon , Enric Robine

14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012

Poster de conférence hal-02748397v1

Ingénierie écologique d’écosystèmes microbiens : impact de facteurs biotiques sur les réseaux métaboliques d’écosystèmes fermentaires

Eric Trably , Yan Rafrafi , Jérôme Hamelin , Eric Latrille , Isabelle Meynial Salles et al.

Journées des microbiologistes de l’INRA, Nov 2012, Isle-sur-la-Sorgue, France. 2012, Journées des Microbiologistes de l'INRA 2012

Poster de conférence hal-02745920v1

Similar organic micropollutants fate in anaerobic mesophilic digesters fed with the same contaminated sludge but exhibiting different microbial populations and different metabolisms

Florence Braun , Jérôme Hamelin , Anaïs Bonnafous , Jean-Philippe Steyer , Dominique Patureau

14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012

Poster de conférence hal-02745508v1

Chemical and toxicological assessments of anaerobic digesters removing EDCs

Florence Braun , Nadine Cathala-Delgenès , Nicolas Creusot , Sélim Aït-Aïssa , Karine Le Ménach et al.

PNRPE 2012, Recent advances on the environmental and health effects of endocrine disrupters, Dec 2012, Paris, France. 2012

Poster de conférence hal-02808649v1

Interspecies interactions for triggering the hydrogen fermentative metabolism in mixed cultures: biotic factors can stabilize or improve production

Jérôme Hamelin , Yan Rafrafi , Marianne Quéméneur , Eric Latrille , Isabelle Meynial-Salles et al.

14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012

Poster de conférence hal-02744935v1

Microbial communities associated with alkaline hydrothermal systems of Prony Bay, New Caledonia

Gaël Erauso , Anne Postec , Marianne Quemeneur , Fatma Benaïssa , Jérôme Hamelin et al.

14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Copenhague, Denmark. 2012

Poster de conférence hal-02745796v1

Apport des développements méthodologiques multi-omiques en méthanisation

Jérôme Hamelin , Kim Milferstedt , Olivier Chapleur , Elie Desmond-Le Quéméner

René Moletta; Romain Cresson. La méthanisation, TEC&DOC, 2024, 978-2-7430-2673-8

Chapitre d'ouvrage hal-04664478v1

Biomasse et déchets pour la production de bioénergies

Jean-Philippe Steyer , Eric Trably , Jérôme J. Hamelin

L'énergie à découvert, 1ère ed., CNRS Editions, 345 p., 2013, A découvert, 978-2-271-07678-6

Chapitre d'ouvrage hal-02805325v1

Surr-O-Gate : Mise au point d’un surrogate de bactérie pathogène pour le suivi de l’hygiénisation du procédé de méthanisation et des pré/post-traitements

Jérôme Hamelin , Malo Sanglier , Felipe Guilayn

France, N° de brevet: Déclaration d'Invention DI-RV-23-0066. 2023

Brevet hal-04152531v1

Method of removing dissolved methane from a liquid composition using biomass in the form of granules and granules of biomass for implementing same

Jérôme Hamelin , Kim Milferstedt , Anissa Sukma Safitri , Roald Kommedal , Philippe Sousbie

France, Patent n° : EP20305063. 2020

Brevet hal-04152483v1

Use of Methanotrophic Oxygenic PhotoGranules (MOPG) for methane removal from effluent of any type of anaerobic digester

Jérôme Hamelin , Kim Milferstedt , Anissa Sukma Safitri , Roald Kommedal , Philippe Sousbie

France, Patent n° : Déclaration d'Invention DI-RV-19-0042. 2019

Brevet hal-04152468v1

A method for measuring the biological diversity of a sample

Patrice Loisel , Bart Haegeman , Jérôme Hamelin , Jérôme Harmand , Jean-Jacques Godon

France, Patent n° : EP 2203744 ( A1) - EP 2053401 (A1) - WO 2009053393 (A1). 2010, 42 p

Brevet hal-01190324v1

A method for measuring the biological diversity of a sample

Patrice Loisel , Bart Haegeman , Jérôme Hamelin , Jérôme Harmand , Jean-Jacques Godon

France, Patent n° : EP 2203744 B1. 2008

Brevet hal-00860587v1

A single community dominates structure and function of a mixture of multiple methanogenic communities

Pawel Sierocinski , Kim Milferstedt , Florian Bayer , Tobias Grosskopf , Mark Alston et al.

2017

Pré-publication, Document de travail hal-02790868v1

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