Jean-Marc Frigerio

Identifiants chercheurs

IdHAL :

jmf-inrae

ORCID :

0000-0003-0471-2075

Publications

Poster de conférence (1)

Enhancing Microbial Genome Reconstruction in Complex Environments by combining Short-and Long-read Sequencing Carole Belliardo,Arthur Péré,Alain Franc,Jean-Marc Frigerio,Nicolas Mauriceet al. 2025 - Journées scientifiques Agroécologie et Numérique, Jan 2025, Dijon, France. , pp.1-1, 2025 Poster de conférence hal-04920790v1

Pré-publication, Document de travail (1)

Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics Carole Belliardo,Nicolas Maurice,Arthur Pere,Samuel Mondy,Alain Francet al. 2025 Pré-publication, Document de travail hal-05340126v1

Article dans une revue (13)

Simple approaches for evaluation of OTU quality based on dissimilarity arrays Marie-Josée Cros,Jean-Marc Frigerio,Nathalie Peyrard,Alain Franc Metabarcoding and Metagenomics, 2024, 8, ⟨10.3897/mbmg.8.108649⟩ Article dans une revue hal-04688014v1
Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization Bonnie Bailet,Laure Apothéloz-Perret-Gentil,Ana Baričević,Teofana Chonova,Alain Francet al. Science of the Total Environment, 2020, 745, pp.140948. ⟨10.1016/j.scitotenv.2020.140948⟩ Article dans une revue hal-03152486v1
Chloroplast DNA variation in a hyperdiverse tropical tree community Henri Caron,Jean‐françois Molino,Daniel Sabatier,Patrick Léger,Philippe Chaumeilet al. Ecology and Evolution, 2019, 9 (8), pp.4897-4905. ⟨10.1002/ece3.5096⟩ Article dans une revue hal-02108230v1
A next-generation sequencing approach to river biomonitoring using benthic diatoms Lenaïg Kermarrec,Alain Franc,Frédéric Rimet,Philippe Chaumeil,Jean-Marc Frigerioet al. Freshwater Science, 2014, 33 (1), pp.349-363. ⟨10.1086/675079⟩ Article dans une revue hal-02632667v1
Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea Florian Alberto,Jérémy Derory,Christophe C. Boury,Jean-Marc Frigerio,Niklaus E. Zimmermannet al. Genetics, 2013, 195 (2), pp.495-512. ⟨10.1534/genetics.113.153783⟩ Article dans une revue hal-02649035v1
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine Emilie E. Chancerel,Camille Lepoittevin,Grégoire G. Le Provost,Yao-Cheng Lin,Juan Pablo Jaramillo-Correaet al. BMC Genomics, 2011, 12, 14 p. ⟨10.1186/1471-2164-12-368⟩ Article dans une revue hal-02649406v1
&lt;em&gt;In vitro vs in silico&lt;/em&gt; detected SNPs for the development of a genotyping array : what can we learn from a non-model species? Camille Lepoittevin,Jean-Marc Frigerio,Pauline Garnier‐géré,Franck F. Salin,María-Teresa Cerveraet al. PLoS ONE, 2010, 5 (6), 9 p. ⟨10.1371/journal.pone.0011034⟩ Article dans une revue hal-02662512v1
Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue Jorge Almiro Paiva,Marcelo Arnoldo Garces,A. Alves,Pauline Garnier‐géré,J.C. Rodrigueset al. New Phytologist, 2008, 178 (2), pp.283-301. ⟨10.1111/j.1469-8137.2008.02379.x⟩ Article dans une revue hal-02655721v1
The proteome of maritime pine wood forming tissue Jean-Marc J.-M. Gion,Céline C. Lalanne,Grégoire G. Le Provost,Hélène Ferry-Dumazet,Jorge Almiro Paivaet al. Proteomics, 2005, 5 (14), pp.3731-3751. ⟨10.1002/pmic.200401197⟩ Article dans une revue istex hal-02678286v1
Cross-species transferability and mapping of genomic and cDNA SSRs in pines David Chagné,Philippe Chaumeil,Agnes Ramboer,Carmen Collada,Antonio Guevaraet al. TAG Theoretical and Applied Genetics, 2004, 19 (6), pp.1204-1214. ⟨10.1007/s00122-004-1683-z⟩ Article dans une revue istex hal-02681281v1
Automated SNP detection in expressed sequence tags : statistical considerations and application to maritime pine sequences Loick Le Dantec,David Chagné,David Pot,Olivier Cantin,Pauline Garnier‐géréet al. Plant Molecular Biology, 2004, 54 (3), pp.461-470. ⟨10.1023/B:PLAN.0000036376.11710.6f⟩ Article dans une revue istex hal-02679200v1
Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings Christian Dubos,Grégoire Le Provost,David Pot,Franck Salin,Céline Lalanneet al. Tree Physiology, 2003, 23 (3), pp.169-179. ⟨10.1093/treephys/23.3.169⟩ Article dans une revue hal-04200586v1
A high density genetic map of maritime pine based on AFLPs David Chagné,Céline Lalanne,Delphine Madur,Satish Kumar,Jean-Marc Frigérioet al. Annals of Forest Science, 2002, 59 (5-6), pp.627-636. ⟨10.1051/forest:2002048⟩ Article dans une revue hal-00881915v1

Rapport (2)

Task-based randomized singular value decomposition and multidimensional scaling Emmanuel Agullo,Olivier Coulaud,Alexandre Denis,Mathieu Faverge,Alain Francet al. [Research Report] RR-9482, Inria Bordeaux - Sud Ouest; Inrae - BioGeCo. 2022, pp.37 Rapport hal-03773985v2
A geometric view of Biodiversity: scaling to metagenomics Pierre Blanchard,Philippe Chaumeil,Jean-Marc Frigerio,Frédéric Rimet,Franck Salinet al. [Research Report] RR-9144, INRIA; INRA. 2018, pp.1-16 Rapport (rapport de recherche) hal-01685711v2

Communication dans un congrès (15)

Viromes of two migratory birds as support for identifying the influence of molecular biology and bioinformatics settings S. Tirera,A. Salmier,D. Donato,Jean-Marc Frigério,S. Thérondet al. 23. International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology, Aug 2018, Berlin, Germany. ⟨10.1093/ve/vez002.069⟩ Communication dans un congrès hal-02735266v1
Gaps to fill when analyzing freshwater diatom diversity with DNA barcoding – notes from a boreal region Maria Kahlert,Agnes Bouchez,Philippe Chaumeil,Alain Franc,Jean-Marc Frigerioet al. 6. European Phycological Congress, Aug 2015, Londres, United Kingdom. ⟨10.1080/09670262.2015.1069489⟩ Communication dans un congrès hal-02743082v1
E-Biothon : Une plate-forme pour accélérer les recherches en biologie, santé et environnement Nicolas Bard,Sylvie Boin,François Bothorel,Philippe Chaumeil,Philippe Collinetet al. Journées SUCCES 2013, Groupe d'Interet Scientifique (GIS). FRA., Nov 2013, Paris, France Communication dans un congrès hal-00927495v1
metaMatch: un algorithme pour l'assignation taxonomique en métagénomique Jean-Marc Frigerio,Philippe Chaumeil,Pierre Gay,Lenaïg Kermarrec,Frédéric Rimetet al. journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France Communication dans un congrès hal-00766072v1
A pipeline for automatic taxonomic community inventories on data from NGS : an example with freshwater diatoms Lenaïg L. Kermarrec,Philippe P. Chaumeil,Frédéric F. Rimet,Jean-Marc Frigerio,Valerie Lavalet al. 4th International Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p Communication dans un congrès hal-00999998v1
Development of a bac library and bac end sequencing for pedunculate oak (Quercus robur L.) : new tools for oak genome studies Patricia P. Faivre-Rampant,Frederique Bitton,Clément Boussardon,Catherine Bodenes-Brezard,Emilie E. Chancerelet al. Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain Communication dans un congrès hal-02753048v1
Bioinformatic analysis of Sanger and 454 ESTs in oak Saneyoshi S. Ueno,Grégoire G. Le Provost,Valérie V. Léger,Christophe Klopp,Celine C. Noirotet al. Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73 Communication dans un congrès hal-00964385v1
Analysis of expressed sequence tags in maritime pine (Pinus pinaster Aiton) Grégoire G. Le Provost,Jean-Marc Frigerio,Philippe Chaumeil,Saneyoshi Ueno,Camille Lepoittevinet al. Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain Communication dans un congrès hal-02758480v1
Genome scanning of regions showing divergent evolution between white oaks (Quercus petraea (matt.) Liebl. and Q.robur l.) : new insights from the oak allelic resequencing project Pauline Garnier‐géré,Tiange Lang,Pierre P. Abadie,Thibaut Decourcelle,Valérie V. Légeret al. Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain Communication dans un congrès hal-02753045v1
Selective pressures between oaks and their obligate fungal parasite causing powdery mildew Marie Laure M. L. Desprez Loustau,Thibaut Decourcelle,Sylvain S. Delzon,Christian Cyril Dutech,Nicolas Feauet al. Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain Communication dans un congrès hal-02755832v1
A pipeline for molecular taxonomy Alain Franc,Melanie Roy,Philippe Chaumeil,Jean-Marc Frigerio Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain Communication dans un congrès hal-02751216v1
In silico screening of conserved orthologous sequences(COS) from Fagaceae ESTs resources Yao-Cheng Lin,Saneyoshi Ueno,Jean-Marc Frigerio,Cyril Cabane,Catherine Bodenes-Brezard Bodénèset al. Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain Communication dans un congrès hal-02755595v1
Transcriptome analysis of wood formation in maritime pine Frigerio Cantón,Grégoire G. Le Provost,V. Garcia,A. Barre,Jean-Marc Frigerioet al. Sustainable Forestry, Wood products and Biotechnology, BIOFOR 02, Nov 2002, Vitoria-Gasteiz, Spain Communication dans un congrès hal-02762876v1
Using transcriptome analysis to identify osmotic stress candidate genes in maritime pine (Pinus pinaster Ait.) Jean-Marc Frigerio,Christian Dubos,Philippe Chaumeil,Franck F. Salin,V. Garciaet al. Sustainable Forestry, Wood products and Biotechnology, BIOFOR 02, Nov 2002, Vitoria-Gasteiz, Spain Communication dans un congrès hal-02764394v1
Comment surmonter les difficultés des espèces forestières pour la recherche de QTL Daniel Prat,Anne Arcade,Catherine Bodenes,Patricia Faivre Rampant,Jean-Marc Frigerioet al. Rencontres de m2ribel 1997, 1997, Versailles, France Communication dans un congrès hal-04666203v1

Chapitre d'ouvrage (1)

Proteomics for genetic and physiological studies in forest trees : application in Maritime Pine Christophe Plomion,Nasser N. Bahrman,Paulo Costa,Christian C. Dubos,Jean-Marc Frigerioet al. Molecular genetics and breeding of forest trees, Haworth press, 2004, 978-1-56022-958-0 978-1-56022-959-9 Chapitre d'ouvrage hal-02827253v1