Joan Alexis Glaunès

Publications

Article dans une revue (18)

Auto-LSN: fully automated liver surface nodularity quantification in CT based on deep learning for the evaluation of advanced chronic liver disease Sisi Yang,Riccardo Sartoris,Yann Teyssier,Alexandre Bône,Maxime Ronotet al. European Radiology, 2026, 128 (5), pp.110622. ⟨10.1007/s00330-026-12346-5⟩ Article dans une revue hal-05542604v1
Kernel Operations on the GPU, with Autodiff,without Memory Overflows Benjamin Charlier,Jean Feydy,Joan Glaunès,François-David Collin,Ghislain Durif Journal of Machine Learning Research, 2021, 22 (74), pp.1-6. ⟨10.48550/arXiv.2004.11127⟩ Article dans une revue hal-02517462v2
A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI Alexis Guyot,Ana B Graciano Fouquier,Emilie Gerardin,Marie Chupin,Joan Glaunèset al. IEEE Transactions on Biomedical Engineering, 2021, 68 (2), pp.393-403. ⟨10.1109/TBME.2020.2999941⟩ Article dans une revue hal-02359660v2
Representation of Surfaces with Normal Cycles. Application to Surface Registration Pierre Roussillon,Joan Glaunès Journal of Mathematical Imaging and Vision, 2019, 61, pp.1069-1095 Article dans une revue hal-01998650v1
Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids Claire Cury,Joan Glaunès,Roberto Toro,Marie Chupin,Gunter Schumannet al. Frontiers in Neuroscience, 2018, 12, pp.803. ⟨10.3389/fnins.2018.00803⟩ Article dans une revue hal-01920263v2
Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease Claire Cury,Joan Glaunès,Marie Chupin,Olivier Colliot Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2017, 5 (5), pp.350 - 358. ⟨10.1080/21681163.2015.1035403⟩ Article dans une revue hal-01135304v1
Matrix-valued Kernels for Shape Deformation Analysis Mario Micheli,Joan Alexis Glaunès Geometry, Imaging and Computing, 2014, 1 (1), pp.57-139. ⟨10.4310/GIC.2014.v1.n1.a2⟩ Article dans une revue hal-00857313v1
Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data Rémi Cuingnet,Joan Alexis Glaunès,Marie Chupin,Habib Benali,Olivier Colliot IEEE Transactions on Pattern Analysis and Machine Intelligence, 2013, 35 (3), pp.682 - 696. ⟨10.1109/TPAMI.2012.142⟩ Article dans une revue hal-00790079v1
Statistical models for deformable templates in image and shape analysis (Modèles statistiques d'atlas déformables pour l'analyse d'images et de formes) Stéphanie Allassonnière,Jérémie Bigot,Joan Alexis Glaunès,Florian Maire,Frederic J.P. Richard Annales Mathématiques Blaise Pascal, 2013, 20 (1), pp.1-35. ⟨10.5802/ambp.320⟩ Article dans une revue hal-00857423v1
Diffeomorphic brain registration under exhaustive sulcal constraints. Guillaume Auzias,Olivier Colliot,Joan Alexis Glaunès,Matthieu Perrot,Jean-François Manginet al. IEEE Transactions on Medical Imaging, 2011, 30 (6), pp.1214-1227. ⟨10.1109/TMI.2011.2108665⟩ Article dans une revue hal-00793675v1
Craniofacial reconstruction as a prediction problem using a Latent Root Regression model Maxime Berar,Françoise Tilotta,Joan Alexis Glaunès,Yves Rozenholc Forensic Science International, 2011, 210 (1-3), pp.228 - 236. ⟨10.1016/j.forsciint.2011.03.010⟩ Article dans une revue hal-00669491v1
A local technique based on vectorized surfaces for craniofacial reconstruction Françoise Tilotta,Joan Alexis Glaunès,Frédéric Richard,Yves Rozenholc Forensic Science International, 2010, 200 (1-3), pp.50-59. ⟨10.1016/j.forsciint.2010.03.029⟩ Article dans une revue istex hal-00522667v1
Construction and analysis of a head CT-scan database for craniofacial reconstruction Françoise Tilotta,Frédéric Richard,Joan Alexis Glaunès,Maxime Berar,Servane Geyet al. Forensic Science International, 2009, 191 (1-3), pp.112.e1-112.e12. ⟨10.1016/j.forsciint.2009.06.017⟩ Article dans une revue hal-00278579v1
Vestibular Asymmetry as the Cause of Idiopathic Scoliosis: A Possible Answer from Xenopus François Lambert,David Malinvaud,Joan Glaunès,Catherine Bergot,Hans Strakaet al. Journal of Neuroscience, 2009, 29 (40), pp.12477-12483. ⟨10.1523/JNEUROSCI.2583-09.2009⟩ Article dans une revue hal-02413541v1
Large Deformation Diffeomorphic Metric Curve Mapping Joan Alexis Glaunès,Anqi Qiu,Michael I. Miller,Laurent Younes International Journal of Computer Vision, 2008, 80 (3), pp.317-336. ⟨10.1007/s11263-008-0141-9⟩ Article dans une revue hal-00534437v1
Diffeomorphic metric surface mapping in subregion of the superior temporal gyrus. Marc Vaillant,Anqi Qiu,Joan Alexis Glaunès,Michael I Miller NeuroImage, 2007, 34 (3), pp.1149-59. ⟨10.1016/j.neuroimage.2006.08.053⟩ Article dans une revue hal-00534439v1
Temporal Constrained Registration of Arbitrary Surface Contours for Use in 4D Radiation Therapy R. Jacques,Joan Alexis Glaunès,E. Ford,T. Mcnutt,R. Tayloret al. Medical Physics : The international journal of medical physics research and practice, 2007, 34 (6), pp.2352 Article dans une revue hal-00625623v1
Landmark Matching via Large Deformation Diffeomorphisms on the Sphere Joan Alexis Glaunès,Marc Vaillant Journal of Mathematical Imaging and Vision, 2004, 20, pp.179-200 Article dans une revue hal-00263586v1

Communication dans un congrès (22)

Partial Matching in the Space of Varifolds Pierre-Louis Antonsanti,Joan Glaunès,Thomas Benseghir,Vincent Jugnon,Irène Kaltenmark The 27th international conference on Information Processing in Medical Imaging (IPMI), Jun 2021, Rønne, Denmark. pp.123-135, ⟨10.1007/978-3-030-78191-0_10⟩ Communication dans un congrès hal-03177620v1
Database Annotation with few Examples: An Atlas-based Framework using Diffeomorphic Registration of 3D Trees Pierre-Louis Antonsanti,Thomas Benseghir,Vincent Jugnon,Joan Glaunès Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, Oct 2020, Lima, Peru. pp.160-170 Communication dans un congrès hal-02949367v1
KeOps: Calcul rapide sur GPU dans les espaces à noyaux Benjamin Charlier,Jean Feydy,Joan Alexis Glaunès Journées de Statistique de la SFdS, May 2018, Palaiseau, France Communication dans un congrès hal-03973487v1
Surface Matching Using Normal Cycles Pierre Roussillon,Joan Glaunès 3rd conference on Geometric Science of Information (GSI 2017), Nov 2017, Paris, France Communication dans un congrès hal-01569336v1
Kernel principal component analysis of the ear morphology Reza Zolfaghari,Nicolas Epain,Craig Jin,Joan Alexis Glaunès,Anthony Tew 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Mar 2017, New Orleans, United States. ⟨10.1109/ICASSP.2017.7952202⟩ Communication dans un congrès hal-01552750v1
Generating a morphable model of ears Reza Zolfaghari,Nicolas Epain,Craig Jin,Joan Alexis Glaunès,Anthony Tew 2016 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Mar 2016, Shangai, China. ⟨10.1109/ICASSP.2016.7471981⟩ Communication dans un congrès hal-01441265v1
Kernel Metrics on Normal Cycles and Application to Curve Matching Pierre Roussillon,Joan Alexis Glaunès MFCA 2015 : 5th MICCAI workshop on Mathematical Foundations of Computational Anatomy, Oct 2015, Munich, Germany Communication dans un congrès hal-01221101v2
Deformetrica: a software for statistical analysis of anatomical shapes Alexandre Routier,Marcel Prastawa,Benjamin Charlier,Cédric Doucet,Joan Alexis Glaunèset al. 21st Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Jun 2015, Honolulu, United States Communication dans un congrès hal-01187469v1
Statistical shape analysis of large datasets using diffeomorphic iterative centroids Claire Cury,Joan Glaunés,Roberto Toro,Gunter D Schumann,Vincent Frouinet al. Human Brain Mapping - 2015, Jun 2015, Honolulu, United States Communication dans un congrès hal-01212226v1
Characterization of Incomplete Hippocampal Inversions in a large dataset of young healthy subjects Claire Cury,Roberto Toro,Fanny Cohen,Amel Mhaya,Dominique Hasbounet al. Human Brain Mapping - 2015, Jun 2015, Honolulu, United States Communication dans un congrès hal-01212219v1
Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI Emilie Gérardin,Joan Alexis Glaunès,Marie Chupin,Ana B. Graciano Fouquier,Kevin Rousselet al. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States Communication dans un congrès hal-01188833v1
A multiscale LDDMM template algorithm for studying ear shape variations Reza Zolfaghari,Nicolas Epain,Craig Jin,Anthony Tew,Joan Alexis Glaunès 2014 8th International Conference on Signal Processing and Communication Systems (ICSPCS), Dec 2014, Gold Coast, Australia. ⟨10.1109/ICSPCS.2014.7021100⟩ Communication dans un congrès hal-01441410v1
Fast Template-based Shape Analysis using Diffeomorphic Iterative Centroid Claire Cury,Joan Alexis Glaunès,Marie Chupin,Olivier Colliot MIUA 2014 - Medical Image Understanding and Analysis 2014, Jul 2014, Egham, United Kingdom. pp.39-44 Communication dans un congrès hal-01050590v1
Large Deformation Diffeomorphic Metric Mapping and Fast-Multipole Boundary Element Method provide new insights for Binaural Acoustics, Reza Zolfaghari,Nicolas Epain,Craig Jin,Joan Alexis Glaunès,Anthony Tew IEEE International Conference on Acoustics, Speech, and Signal Processing, May 2014, Italy. http://arxiv.org/abs/1401.7100 Communication dans un congrès hal-01053758v1
Template Estimation for Large Database: A Diffeomorphic Iterative Centroid Method Using Currents Claire Cury,Joan Alexis Glaunès,Olivier Colliot GSI 2013 - First International Conference Geometric Science of Information, Aug 2013, Paris, France. pp.103-111, ⟨10.1007/978-3-642-40020-9_10⟩ Communication dans un congrès istex hal-00857440v1
Joint T1 and Brain Fiber Log-Demons Registration Using Currents to Model Geometry Viviana Siless,Joan Glaunès,Pamela Guevara,Jean-François Mangin,Cyril Pouponet al. MICCAI, Oct 2012, Nice, France, France Communication dans un congrès hal-00723367v1
Modelling morphological variability of the hippocampus using manifold learning and large deformations Claire Cury,Joan Glaunès,Emilie Gerardin,Marie Chupin,Olivier Colliot OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Pekin, China Communication dans un congrès hal-00816100v1
Anatomical Regularization on Statistical Manifolds for the Classification of Patients with Alzheimer's Disease R. Cuingnet,Joan Alexis Glaunès,Marie Chupin,Habib Benali,Olivier Colliotet al. MICCAI Workshop on Machine Learning in Medical Imaging, Sep 2011, Toronto, Canada. pp.201-208, ⟨10.1007/978-3-642-24319-6_25⟩ Communication dans un congrès istex hal-00712091v1
DISCO: a coherent diffeomorphic framework for brain registration under exhaustive sulcal constraints Guillaume Auzias,Joan Alexis Glaunès,Olivier Colliot,Perrot Matthieu,Jean-François Manginet al. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, Sep 2009, United Kingdom. pp.730-738 Communication dans un congrès hal-00534432v1
Multi-Scale Diffeomorphic Cortical Registration Under Manifold Sulcal Constraints Guillaume Auzias,Joan Alexis Glaunès,Arnaud Cachia,Pascal Cathier,Eric Bardinetet al. 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, France. pp.1127-1130 Communication dans un congrès hal-00534433v1
Template estimation form unlabeled point set data and surfaces for Computational Anatomy Joan Alexis Glaunès,Sarang Joshi 1st MICCAI Workshop on Mathematical Foundations of Computational Anatomy: Geometrical, Statistical and Registration Methods for Modeling Biological Shape Variability, Oct 2006, Copenhagen, Denmark Communication dans un congrès hal-00263576v1
Surface Matching via Currents Marc Vaillant,Joan Alexis Glaunès IPMI 2005, Mar 2005, France. pp.381-392 Communication dans un congrès hal-00263652v1

Chapitre d'ouvrage (4)

Fidelity metrics between curves and surfaces: currents, varifolds, and normal cycles Nicolas Charon,Benjamin Charlier,Joan Glaunès,Pietro Gori,Pierre Roussillon Riemannian Geometric Statistics in Medical Image Analysis, Elsevier, pp.441-477, 2020, ⟨10.1016/B978-0-12-814725-2.00021-2⟩ Chapitre d'ouvrage hal-02341029v1
Diffeomorphic Iterative Centroid Methods for Template Estimation on Large Datasets Claire Cury,Joan Alexis Glaunès,Olivier Colliot Frank Nielsen. Geometric Theory of Information, Chapter 10, Springer, pp.273-299, 2014, ⟨10.1007/978-3-319-05317-2_10⟩ Chapitre d'ouvrage hal-00939326v1
Facial reconstruction as a regression problem Maxime Berar,Marek Bucki,Françoise Tilotta,Joan Alexis Glaunès,Michel Desvigneset al. Digital Forensics for Health Sciences: Applications in Practice and Research, IGI Global, Hershey, pp.68-87, 2011, 978-1609604837. ⟨10.4018/978-1-60960-483-7⟩ Chapitre d'ouvrage hal-00748933v1
Modeling planar shape variation via hamiltonian flows of curves Joan Alexis Glaunès,Alain Trouvé,Laurent Younes Statistics and Analysis of Shapes, Birkhauser, pp.335--361, 2006, ⟨10.1007/0-8176-4481-4_14⟩ Chapitre d'ouvrage istex hal-00534447v1