Joan Hérisson

Identifiants chercheurs

IdHAL :

joan-herisson

ORCID :

0000-0001-9741-0847

IdRef :

084538821

VIAF :

217255910

ISNI :

0000000359566386

Publications

Article dans une revue (9)

Machine learning in predictive biocatalysis: A comparative review of methods and applications Neha Tripathi,Joan Hérisson,Jean-Loup Faulon Biotechnology Advances, 2025, 84, pp.108698. ⟨10.1016/j.biotechadv.2025.108698⟩ Article dans une revue hal-05231537v1
An AI-driven workflow for the accelerated optimization of cell-free protein synthesis Mostafa Khalil,Aisha Elsawah,An Hoang,Jean-Loup Faulon,Baptiste Panthuet al. iScience, 2025, 28 (10), pp.113599. ⟨10.1016/j.isci.2025.113599⟩ Article dans une revue hal-05315797v1
The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering Joan Hérisson,Thomas Duigou,Melchior Du Lac,Kenza Bazi-Kabbaj,Mahnaz Sabeti Azadet al. Nature Communications, 2022, 13 (1), pp.5082. ⟨10.1038/s41467-022-32661-x⟩ Article dans une revue hal-03649340v2
XTMS: pathway design in an eXTended metabolic space Pablo Carbonell,Pierre Parutto,Joan Hérisson,Shashi Bhushan Pandit,Jean-Loup Faulon Nucleic Acids Research, 2014, 42, pp.W389-394. ⟨10.1093/nar/gku362⟩ Article dans une revue hal-01608645v1
Analyse des systèmes de visualisation et d'interaction 3D pour la biologie moléculaire Mouna Essabbah,Samir Otmane,Guillaume Bouyer,Joan Hérisson,Malik Mallem Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2012, 31 (2), pp.187--214. ⟨10.3166/tsi.31.187-214⟩ Article dans une revue istex hal-00633364v1
Genomic Organization of Evolutionarily Correlated Genes in Bacteria: Limits and Strategies Ivan Junier,Joan Hérisson,François Képès Journal of Molecular Biology, 2012, 419 (5), pp.369 - 386. ⟨10.1016/j.jmb.2012.03.009⟩ Article dans une revue istex hal-01635954v1
The bacterial Tn9 chloramphenicol resistance gene: an attractive DNA segment for Mos1 mariner insertions Gwenaelle Crenes,Dina Ivo,Joan Herisson,Sarah Dion,Sylvaine Renaultet al. Mol. Genet. Genomics, 2009, 281 (3), pp.315-328 Article dans une revue hal-00617513v1
The bacterial Tn9 chloramphenicol resistance gene : an attractive DNA segment for Mos1 mariner insertions. Gwénaëlle Crenes,Dina Ivo,Joan Herisson,Sara Dion,Sylvaine Renaultet al. Mol Genet Genomics, 2009, 28, pp.315-328 Article dans une revue hal-00375620v1
A 3D pattern matching algorithm for DNA sequences Joan Hérisson,Guillaume Payen,Rachid Gherbi Bioinformatics, 2007, 23 (6), pp.680-686. ⟨10.1093/bioinformatics/btl669⟩ Article dans une revue hal-04351587v1

Communication dans un congrès (12)

Galaxy-SynBioCAD — An Automated Pipeline for Synthetic Biology Design and Engineering Joan Hérisson,Pablo Carbonell,Jean-Loup Faulon,Thomas Duigou Global BioFoundries Alliance Meeting 2023 (GBA2023), Sep 2023, Copenaghen, Denmark Communication dans un congrès hal-04351679v1
Automated Pipeline for Synthetic Biology Design and Engineering Jean-Loup Faulon,Thomas Duigou,Joan Hérisson JBEI seminar series, JBEI (DOE), Oct 2022, Emeryville, CA, United States Communication dans un congrès hal-04275834v1
The Galaxy-SynBioCAD portal: tools and workflows for synthetic biology and metabolic engineering Thomas Duigou,Joan Hérisson,Jean-Loup Faulon,Guillaume Gricourt,Kenza Bazi Kabbajet al. Journées du PEPI IBIS 2021, Nov 2021, Toulouse, France Communication dans un congrès hal-04355490v1
Systèmes de visualisation et d'interaction 3D pour la biologie moléculaire Mouna Essabbah,Samir Otmane,Guillaume Bouyer,Joan Hérisson,Malik Mallem 5èmes journées de l'AFRV, Dec 2010, Orsay, France Communication dans un congrès hal-00633201v1
Spatial Information and Boolean Genetic Regulatory Networks. Matthieu Manceny,Marc Aiguier,Pascale Le Gall,Joan Hérisson,Ivan Junieret al. Bioinformatics and Computational Biology (BICoB), Apr 2008, New Orleans, United States. pp.270-281, ⟨10.1007/978-3-642-00727-9_26⟩ Communication dans un congrès hal-00812184v1
Spatial organization of DNA: from the physical data to the 3D model Mouna Essabbah,Samir Otmane,Malik Mallem,Joan Hérisson 7th IEEE/ACS International Conference on Computer Systems and Applications, May 2009, Rabat, Morocco. pp.880--883, ⟨10.1109/AICCSA.2009.5069435⟩ Communication dans un congrès hal-00633194v1
A New Approach to Design an Interactive System for Molecular Analysis Mouna Essabbah,Samir Otmane,Joan Hérisson,Malik Mallem 13th International Conference on Human-Computer Interaction (HCI International 2009), Jul 2009, San Diego, CA, United States. pp.713--722, ⟨10.1007/978-3-642-02583-9_77⟩ Communication dans un congrès hal-00407168v1
Towards a biophysical 3D model of the DNA Mouna Essabbah,Joan Hérisson,Samir Otmane,Malik Mallem First Workshops on Image Processing Theory, Tools and Applications (IPTA 2008)), Nov 2008, Sousse, Tunisia. pp.85--90, ⟨10.1109/IPTA.2008.4743734⟩ Communication dans un congrès hal-00344875v1
Visual Data Mining of Genomic Databases by Immersive Graph-Based Exploration Nicolas Férey,Pierre-Emmanuel Gros,Joan Hérisson,Rachid Gherbi GRAPHITE 2005, 3rd International Conference On Computer Graphics and Interactives Techniques In Autralia and Southeast Asia, Nov 2005, Dunedin, New Zealand. pp.143-146, ⟨10.1145/1101389.1101418⟩ Communication dans un congrès hal-00145610v1
Combining Applications and Databases Integration Approaches in a Common Distributed Genomic Platform P. E. Gros,Joan Hérisson,N. Ferey,R. Gherbi 19th International Conference on Advanced Information Networking and Applications (AINA'05) Volume 1 (AINA papers), Mar 2005, Taipei, Taiwan. ⟨10.1109/AINA.2005.136⟩ Communication dans un congrès hal-04351647v1
DNA in Virtuo visualization and exploration of 3D genomic structures Joan Hérisson,P. Gros,N. Férey,O. Magneau,R. Gherbi AFRIGRAPH04: 3rd International Conference on Computer Graphics, Virtual Reality, Visualization and Interaction in Africa, Nov 2005, Stellenbosch South Africa, South Africa. pp.35-40, ⟨10.1145/1029949.1029955⟩ Communication dans un congrès hal-04351628v1
Representation and processing of complex DNA spatial architecture and its annotated genomic content Rachid Gherbi,Joan Hérisson Pacific Symposium on Biocomputing, Jan 2002, Lihue, United States. pp.151-62, ⟨10.1142/9789812799623_0015⟩ Communication dans un congrès hal-04351635v1

Poster de conférence (4)

Automated Bio-Production Pipeline Joan Hérisson,Thomas Duigou,Guillaume Gricourt,Jean-Loup Faulon The Automated Scientist, Mar 2024, Copenhagen, Denmark Poster de conférence hal-04408969v1
Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic Engineering Thomas Duigou,Joan Hérisson,Melchior Du Lac,Kenza Bazi-Kabbaj,Mahnaz Sabeti Azadet al. JOBIM 2022, Jul 2022, Rennes, France. Poster de conférence hal-04302811v1
Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic Engineering Joan Hérisson,Thomas Duigou,Melchior Du Lac,Kenza Bazi Kabbaj,Mahnaz Sabeti Azadet al. Global BioFoundries Alliance Meeting 2022 (GBA2022), Oct 2022, Montréal, Canada Poster de conférence hal-04351669v1
Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic Engineering Thomas Duigou,Joan Hérisson,Melchior Du Lac,Kenza Bazi-Kabbaj,Mahnaz Sabeti Azadet al. BioSynSys 2022, Sep 2022, Paris, France. Poster de conférence hal-04302912v1