Johanne Aubé

Publications

Article dans une revue (19)

Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects Sophie Arnaud-Haond,Blandine Trouche,Cathy Liautard-Haag,Karine Alain,Johanne Aubéet al. Scientific Data , 2025, 12 (1), pp.1982. ⟨10.1038/s41597-025-06009-1⟩ Article dans une revue hal-05434404v1
Sulfur-rich deposits associated with the deep submarine volcano Fani Maoré support broad microbial sulfur cycling communities Stéven Yvenou,Mélanie Le Moigne,Olivier Rouxel,Johanne Aubé,Blandine Troucheet al. Microbiome, 2025, 13 (1), pp.166. ⟨10.1186/s40168-025-02153-3⟩ Article dans une revue hal-05162651v1
FISH , a new tool for in situ preservation of RNA in tissues of deep‐sea mobile fauna Valérie Cueff‐gauchard,Johanne Aubé,Jean‐romain Lagadec,Laurent Bignon,Jean‐pierre Lafontaineet al. Limnology and Oceanography: Methods, 2025, 23 (4), pp.273-292. ⟨10.1002/lom3.10677⟩ Article dans une revue hal-05045012v1
Symbiont acquisition strategies in post-settlement stages of two co-occurring deep-sea Rimicaris shrimp. Marion Guéganton,Pierre Methou,Johanne Aubé,Cyril Noël,Ouafae Rouxelet al. Ecology and Evolution, 2024, 14 (11), pp.e70369. ⟨10.1002/ece3.70369⟩ Article dans une revue hal-04878513v1
Cooperation between two modes for DNA replication initiation in the archaeon &lt;i&gt;Thermococcus barophilus&lt;/i&gt; Logan Mc Teer,Yann Moalic,Valérie Cueff-Gauchard,Ryan Catchpole,Gaëlle Hogrelet al. mBio, 2024, 15, ⟨10.1128/mbio.03200-23⟩ Article dans une revue hal-04546373v1
Cooperation between two modes for DNA replication initiation in the archaeon Thermococcus barophilus Logan Mc Teer,Yann Moalic,Valérie Cueff-Gauchard,Ryan Catchpole,Gaëlle Hogrelet al. mBio, 2024, 15 (4), ⟨10.1128/mbio.03200-23⟩ Article dans une revue hal-04728152v1
A metagenomic insight into the microbiomes of geothermal springs in the Subantarctic Kerguelen Islands Maxime Allioux,Stéven Yvenou,Alexander Merkel,Marc Cozannet,Johanne Aubéet al. Scientific Reports, 2022, 12 (1), pp.22243. ⟨10.1038/s41598-022-26299-4⟩ Article dans une revue hal-03912182v1
A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata Johanne Aubé,Marie-Anne Cambon-Bonavita,Lourdes Velo-Suárez,Valérie Cueff-Gauchard,Françoise Lesongeuret al. Microbiome, 2022, 10 (1), pp.189. ⟨10.1186/s40168-022-01380-2⟩ Article dans une revue hal-04020088v1
Persephonella atlantica sp. nov.: How to adapt to physico-chemical gradients in high temperature hydrothermal habitats David François,Anne Godfroy,Clémentine Mathien,Johanne Aubé,Cecile Cathalotet al. Systematic and Applied Microbiology, 2021, 44 (1), 126176 (10p.). ⟨10.1016/j.syapm.2020.126176⟩ Article dans une revue hal-04203270v1
Transcriptomic evidence for versatile metabolic activities of mercury cycling microorganisms in brackish microbial mats Adrien Vigneron,Perrine Cruaud,Johanne Aubé,Remy Guyoneaud,Marisol Goñi npj Biofilms and Microbiomes, 2021, 7 (83), ⟨10.1038/s41522-021-00255-y⟩ Article dans une revue hal-03515719v1
Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria Marie-Anne Cambon-Bonavita,Johanne Aubé,Valérie Cueff-Gauchard,Julie Reveillaud Microbiome, 2021, 9, pp.87. ⟨10.1186/s40168-021-01045-6⟩ Article dans une revue hal-03245381v1
Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning Johanne Aubé,Pavel Senin,Patricia Bonin,Olivier Pringault,Céline Jeziorskiet al. Microbial ecology, 2020, 80 (2), pp.286-295. ⟨10.1007/s00248-020-01493-x⟩ Article dans une revue hal-03065790v1
Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode Laure Bellec,Marie-Anne Cambon-Bonavita,Lucile Durand,Johanne Aube,Nicolas Gayetet al. Frontiers in Microbiology, 2020, 11, pp.2023. ⟨10.3389/fmicb.2020.02023⟩ Article dans une revue hal-03932994v1
Desulfobotulus mexicanus sp. nov., a novel sulfate-reducing bacterium isolated from the sediment of an alkaline crater lake in Mexico Maria Fernanda Pérez-Bernal,Elcia Margareth Souza Brito,Manon Bartoli,Johanne Aubé,Bernard Ollivieret al. International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (5), pp.3219-3225. ⟨10.1099/ijsem.0.004159⟩ Article dans une revue hal-02860502v1
Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development Pierre Methou,Ivan Hernández-Ávila,Johanne Aubé,Valérie Cueff-Gauchard,Nicolas Gayetet al. Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.00808⟩ Article dans une revue hal-03330598v1
Biodeterioration of mortars exposed to sewers in relation to microbial diversity of biofilms formed on the mortars surface Christine Lors,Johanne Aubé,Remy Guyoneaud,Franck Vandenbulcke,Denis Damidot International Biodeterioration and Biodegradation, 2018, 130, pp.23 - 31. ⟨10.1016/j.ibiod.2018.03.012⟩ Article dans une revue istex hal-01784882v1
Desulfonatronum parangueonense sp. nov., a sulfate-reducing bacterium isolated from sediment of an alkaline crater lake M.F. Pérez Bernal,Elcia Margareth Souza Brito,Manon Bartoli,Johanne Aubé,Marie-Laure Fardeauet al. International Journal of Systematic and Evolutionary Microbiology, 2017, 67 (12), pp.4999-5005. ⟨10.1099/ijsem.0.002399⟩ Article dans une revue hal-01679475v1
The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats Johanne Aubé,Pavel Senin,Olivier Pringault,Patricia Bonin,Bruno Deflandreet al. Marine Pollution Bulletin, 2016, 111 (1-2), pp.115-125. ⟨10.1016/j.marpolbul.2016.07.023⟩ Article dans une revue istex ird-02048573v1
Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat O. Pringault,Johanne Aubé,Olivier Bouchez,C. Klopp,J. Marietteet al. Chemosphere, 2015, 135, pp.189-201. ⟨10.1016/j.chemosphere.2015.04.037⟩ Article dans une revue istex hal-01631880v1

Communication dans un congrès (2)

Diversité taxonomique et fonctionnelle des communautés microbiennes impliquées dans le cycle du Fe au niveau d'un site hydrothermal marin profond actif à basse température. Eva Pouder,Léna Ailliot,Ludivine Michaudet,Johanne Aubé,Marie-Anne Cambon-Bonavitaet al. 12ème congrès de l'AFEM, Nov 2025, Beaune, France Communication dans un congrès hal-05590111v1
Sulfur compounds support a complete microbial energy production cycle in the sulfur-rich massif of the submarine volcano Fani Maoré Stéven Yvenou,Mélanie Le Moigne,Olivier Rouxel,Johanne Aubé,Blandine Troucheet al. 6th International Symposium on Microbial Sulfur Metabolism (ISMSM-6), University of Antwerp, Jul 2023, Anvers, Belgium Communication dans un congrès hal-04220584v1