Jean-Olivier IRISSON

Identifiants chercheurs

IdHAL :

joirisson

ORCID :

0000-0003-4920-3880

IdRef :

174736940

Publications

Article dans une revue (54)

Best practices for AI-based image analysis applications in aquatic sciences: The iMagine case study Elnaz Azmi,Khadijeh Alibabaei,Valentin Kozlov,Tjerk Krijger,Gabriele Accarinoet al. Ecological Informatics, 2025, 91, pp.103306. ⟨10.1016/j.ecoinf.2025.103306⟩ Article dans une revue hal-05157921v1
ZooCAMNet : plankton images captured with the ZooCAM Jean-Baptiste Romagnan,Thelma Panaïotis,Paul Bourriau,Marie-Madeleine Danielou,Mathieu Dorayet al. SEANOE = Sea scientific open data publication, 2024, ⟨10.17882/101928⟩ Article dans une revue hal-04870092v1
Optimizing Plankton Image Classification With Metadata-Enhanced Representation Learning Mojtaba Masoudi,Sarah L.C. Giering,Noushin Eftekhari,Miquel Massot-Campos,Jean-Olivier Irissonet al. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 2024, 17, pp.17117 - 17133. ⟨10.1109/jstars.2024.3424498⟩ Article dans une revue hal-04792218v1
First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices Mathilde Dugenne,Marco Corrales-Ugalde,Jessica Luo,Rainer Kiko,Todd O'Brienet al. Earth System Science Data, 2024, 16 (6), pp.2971-2999. ⟨10.5194/essd-16-2971-2024⟩ Article dans une revue hal-04648046v1
The genomic potential of photosynthesis in piconanoplankton is functionally redundant but taxonomically structured at a global scale Alexandre Schickele,Pavla Debeljak,Sakina-Dorothée Ayata,Lucie Bittner,Éric Pelletieret al. Science Advances , 2024, 10 (33), pp.eadl0534. ⟨10.1126/sciadv.adl0534⟩ Article dans une revue hal-04735120v1
Harmful Ostreopsis cf. ovata blooms could extend in time span with climate change in the Western Mediterranean Sea Salomé Fabri-Ruiz,Elisa Berdalet,Caroline Ulses,Samuel Somot,M. Vilaet al. Science of the Total Environment, 2024, 947, pp.174726. ⟨10.1016/j.scitotenv.2024.174726⟩ Article dans une revue hal-04652166v1
Morphological diversity increases with decreasing resources along a zooplankton time series Miriam Beck,Caroline Cailleton,Lionel Guidi,Corinne Desnos,Laetitia Jalabertet al. Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (2011), ⟨10.1098/rspb.2023.2109⟩ Article dans une revue hal-04385533v1
Machine learning in marine ecology: an overview of techniques and applications Peter Rubbens,Stephanie Brodie,Tristan Cordier,Diogo Destro Barcellos,Paul Devoset al. ICES Journal of Marine Science, 2023, 80 (7), pp.1829-1853. ⟨10.1093/icesjms/fsad100⟩ Article dans une revue hal-04284704v1
Mistaking plastic for zooplankton: Risk assessment of plastic ingestion in the Mediterranean sea S. Fabri-Ruiz,A. Baudena,F. Moullec,F. Lombard,J.-O. Irissonet al. Science of the Total Environment, 2023, 856 (Part 2), pp.159011. ⟨10.1016/j.scitotenv.2022.159011⟩ Article dans une revue hal-03959364v1
Machine learning techniques to characterize functional traits of plankton from image data Eric C. Orenstein,Sakina-Dorothée Ayata,Frédéric Maps,Érica C. Becker,Fabio Benedettiet al. Limnology and Oceanography, 2022, 67 (8), pp.1647-1669. ⟨10.1002/lno.12101⟩ Article dans une revue hal-03482282v2
Correcting estimations of copepod volume from 2-dimensional images Cédric Dubois,Jean Olivier Irisson,Eric Debreuve Limnology and Oceanography : methods, 2022, 20 (6), pp.361-371. ⟨10.1002/lom3.10492⟩ Article dans une revue hal-03698136v2
The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms Marc Picheral,Camille Catalano,Denis Brousseau,Hervé Claustre,Laurent Coppolaet al. Limnology and Oceanography: Methods, 2022, ⟨10.1002/lom3.10475⟩ Article dans une revue hal-03508179v1
Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning Laetitia Drago,Thelma Panaïotis,Jean-Olivier Irisson,Marcel Babin,Tristan Biardet al. Frontiers in Marine Science, 2022, 9, pp.894372. ⟨10.3389/fmars.2022.894372⟩ Article dans une revue hal-03810062v1
Patterns of mesozooplankton community composition and vertical fluxes in the global ocean Yawouvi Dodji Soviadan,Fabio Benedetti,Manoela Brandão,Sakina-Dorothée Ayata,Jean-Olivier Irissonet al. Progress in Oceanography, 2022, 200, pp.102717. ⟨10.1016/j.pocean.2021.102717⟩ Article dans une revue hal-03449715v1
Machine Learning for the Study of Plankton and Marine Snow from Images Jean-Olivier Irisson,Sakina-Dorothée Ayata,Dhugal Lindsay,Lee Karp-Boss,Lars Stemmann Annual Review of Marine Science, 2022, 14 (1), ⟨10.1146/annurev-marine-041921-013023⟩ Article dans une revue hal-03335138v1
Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions Juan José Pierella Karlusich,Fabien Lombard,Jean-Olivier Irisson,Chris Bowler,Rachel Foster Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.878803⟩ Article dans une revue hal-03956267v1
Content-Aware Segmentation of Objects Spanning a Large Size Range: Application to Plankton Images Thelma Panaïotis,Louis Caray--Counil,Ben Woodward,Moritz S Schmid,Dominic Dapranoet al. Frontiers in Marine Science, 2022, 9, pp.870005. ⟨10.3389/fmars.2022.870005⟩ Article dans une revue hal-03790583v1
Temporal fluctuations in zooplankton size, abundance, and taxonomic composition since 1995 in the North Western Mediterranean Sea Guillaume Feuilloley,Jean-Marc Fromentin,Claire Saraux,Jean-Olivier Irisson,Laetitia Jalabertet al. ICES Journal of Marine Science, 2022, 79 (3), pp.882-900. ⟨10.1093/icesjms/fsab190⟩ Article dans une revue hal-03374991v1
A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5 Rainer Kiko,Marc Picheral,David Antoine,Marcel Babin,Léo Berlineet al. Earth System Science Data, 2022, 14 (9), pp.4315-4337. ⟨10.5194/essd-14-4315-2022⟩ Article dans une revue hal-03794258v1
Evidence for a consistent use of external cues by marine fish larvae for orientation Igal Berenshtein,Robin Faillettaz,Jean-Olivier Irisson,Moshe Kiflawi,Ulrike Siebecket al. Communications Biology, 2022, 5 (1), pp.1307. ⟨10.1038/s42003-022-04137-7⟩ Article dans une revue hal-03954337v1
Marine snow morphology illuminates the evolution of phytoplankton blooms and determines their subsequent vertical export Emilia Trudnowska,Léo Lacour,Mathieu Ardyna,Andreas Rogge,Jean Olivier Irissonet al. Nature Communications, 2021, 12 (1), pp.2816. ⟨10.1038/s41467-021-22994-4⟩ Article dans une revue hal-03230967v1
Macroscale patterns of oceanic zooplankton composition and size structure Manoela Brandão,Fabio Benedetti,Séverine Martini,Yawouvi Dodji Soviadan,Jean-Olivier Irissonet al. Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩ Article dans une revue hal-03318806v1
Trait‐based approach using in situ copepod images reveals contrasting ecological patterns across an Arctic ice melt zone Laure Vilgrain,Frederic Maps,Marc Picheral,Marcel Babin,Cyril Aubryet al. Limnology and Oceanography, 2021, 66 (4), pp.1155-1167. ⟨10.1002/lno.11672⟩ Article dans une revue hal-03119903v1
Impact of dust addition on Mediterranean plankton communities under present and future conditions of pH and temperature: an experimental overview Frédéric Gazeau,Céline Ridame,France van Wambeke,Samir Alliouane,Christian Stolpeet al. Biogeosciences, 2021, 18 (17), pp.5011-5034. ⟨10.5194/bg-18-5011-2021⟩ Article dans une revue hal-03342476v1
Sinking Organic Particles in the Ocean—Flux Estimates From in situ Optical Devices Sarah Lou Carolin Giering,Emma Louise Cavan,Sünnje Linnéa Basedow,Nathan Briggs,Adrian B Burdet al. Frontiers in Marine Science, 2020, 6, pp.e00834. ⟨10.3389/fmars.2019.00834⟩ Article dans une revue hal-03043052v1
Spatio-temporal patterns of larval fish settlement in the northwestern Mediterranean Sea Robin Faillettaz,Raphaël Voué,Romain Crec'Hriou,Laure-Hélène Garsi,Gilles Lecaillonet al. Marine Ecology Progress Series, In press, ⟨10.3354/meps13191⟩ Article dans une revue hal-02478582v1
The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area Fabio Benedetti,Laëtitia Jalabert,Marc Sourisseau,Beatriz Becker,Caroline Cailliauet al. Frontiers in Marine Science, 2019, 6, pp.214. ⟨10.3389/fmars.2019.00214⟩ Article dans une revue hal-02125435v1
Orientation of Mediterranean fish larvae varies with location Amélie Rossi,Jean-Olivier Irisson,Marc Levaray,Pasqualini Vanina,Sylvia Agostini Marine Biology, 2019, 166 (8), pp.100. ⟨10.1007/S00227-019-3548-7⟩ Article dans une revue hal-03498519v1
Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea Fabio Benedetti,Sakina-Dorothée Ayata,Jean-Olivier Irisson,Fanny Adloff,François Guilhaumon Diversity and Distributions, 2019, Conservation Biogeography in a changing climate, 25 (4), pp.568-581. ⟨10.1111/ddi.12857⟩ Article dans une revue hal-02108192v1
Globally Consistent Quantitative Observations of Planktonic Ecosystems Fabien Lombard,Emmanuel Boss,Anya M Waite,Meike Vogt,Julia Uitzet al. Frontiers in Marine Science, 2019, 6, pp.Article 196. ⟨10.3389/fmars.2019.00196⟩ Article dans une revue hal-02325576v1
Regionalisation of the Mediterranean basin, a MERMEX synthesis Sakina-Dorothée Ayata,Jean-Olivier Irisson,Anais Aubert,L. Berline,Jean-Claude Dutayet al. Progress in Oceanography, 2018, 163, pp.7-20. ⟨10.1016/j.pocean.2017.09.016⟩ Article dans une revue hal-01629104v1
Swimming speeds of Mediterranean settlement-stage fish larvae nuance Hjort's aberrant drift hypothesis Robin Faillettaz,Elysanne Durand,Claire B Paris,Philippe Koubbi,Jean-Olivier Irisson Limnology and Oceanography, 2018, 63 (2), pp.509 - 523. ⟨10.1002/lno.10643⟩ Article dans une revue hal-01778008v1
Larval Fish Swimming Behavior Alters Dispersal Patterns From Marine Protected Areas in the North-Western Mediterranean Sea Robin Faillettaz,Claire B. Paris,Jean-Olivier Irisson Frontiers in Marine Science, 2018, 5, pp.97. ⟨10.3389/fmars.2018.00097⟩ Article dans une revue hal-03505066v1
Ocean Solutions to Address Climate Change and Its Effects on Marine Ecosystems Jean-Pierre Gattuso,Alexandre Magnan,Laurent Bopp,William Cheung,Carlos M. Duarteet al. Frontiers in Marine Science, 2018, 5, pp.337. ⟨10.3389/fmars.2018.00337⟩ Article dans une revue hal-02021326v1
Automated plankton image analysis using convolutional neural networks Jessica Y. Luo,Jean-Olivier Irisson,Benjamin Graham,Cédric Guigand,Amin Sarafazet al. Limnology and Oceanography : methods, 2018, 16 (12), pp.814-827. ⟨10.1002/lom3.10285⟩ Article dans une revue hal-03390539v1
Diagnostic delay of pyogenic vertebral osteomyelitis and its associated factors M. Jean,Jean-Olivier Irisson,G. Gras,F. Bouchand,D. Simoet al. Scandinavian Journal of Rheumatology, 2017, 46 (1), pp.64-68. ⟨10.3109/03009742.2016.1158314⟩ Article dans une revue hal-03502963v1
Biogeochemical regions of the Mediterranean Sea: an objective multidimensional and multivariate environmental approach Gabriel Reygondeau,Cécile Guieu,Fabio Benedetti,Jean-Olivier Irisson,Sakina-Dorothée Ayataet al. Progress in Oceanography, 2017, ⟨10.1016/j.pocean.2016.11.001⟩ Article dans une revue hal-01409074v1
Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research Guillem Chust,Meike Vogt,Fabio Benedetti,Teofil Nakov,Sébastien Villégeret al. Frontiers in Marine Science, 2017, 4, pp.68. ⟨10.3389/fmars.2017.00068⟩ Article dans une revue hal-01545318v1
The relationship between heterotrophic feeding and inorganic nutrient availability in the scleractinian coral T-reniformis under a short-term temperature increase Leïla Ezzat,Erica Towle,Jean-Olivier Irisson,Chris Langdon,Christine Ferrier-Pagès Limnology and Oceanography, 2016, 61 (1), pp.89-102. ⟨10.1002/lno.10200⟩ Article dans une revue hal-03502982v1
Imperfect automatic image classification successfully describes plankton distribution patterns Robin Faillettaz,Marc Picheral,Jessica Y. Luo,Cédric Guigand,Robert K. Cowenet al. Methods in Oceanography, 2016, ⟨10.1016/j.mio.2016.04.003⟩ Article dans une revue hal-01324904v1
Seismic monitoring in the oceans by autonomous floats Alexey Sukhovich,Sébastien Bonnieux,Yann Hello,Jean-Olivier Irisson,Frederik J. Simonset al. Nature Communications, 2015, 6, pp.8027 ⟨10.1038/ncomms9027⟩ Article dans une revue insu-01235776v1
Sun-Compass Orientation in Mediterranean Fish Larvae Robin Faillettaz,Agathe Blandin,Claire B. Paris,Philippe Koubbi,Jean-Olivier Irisson PLoS ONE, 2015, 10 (8), pp.e0135213. ⟨10.1371/journal.pone.0135213⟩ Article dans une revue hal-01233449v1
Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability E. L. Howes,L. Stemmann,C. Assailly,J. -O. Irisson,M. Dimaet al. Marine Ecology Progress Series, 2015, 531, pp.193-206. ⟨10.3354/meps11322⟩ Article dans une revue hal-03502730v1
A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience A. Crise,H. Kaberi,J. Ruiz,A. Zatsepin,E. Arashkevichet al. Marine Pollution Bulletin, 2015, 95 (1), pp.28-39. ⟨10.1016/j.marpolbul.2015.03.024⟩ Article dans une revue hal-01169407v1
With a Little Help from My Friends: Group Orientation by Larvae of a Coral Reef Fish Jean-Olivier Irisson,Claire B. Paris,Jeffrey M. Leis,Michelle N. Yerman PLoS ONE, 2015, 10 (12), pp.e0144060. ⟨10.1371/journal.pone.0144060⟩ Article dans une revue hal-01277844v1
Orientation of fish larvae in situ is consistent among locations, years and methods, but varies with time of day Jeffrey M. Leis,Claire B. Paris,Jean-Olivier Irisson,Michelle N. Yerman,Ulrike E. Siebeck Marine Ecology Progress Series, 2014, 505, pp.193-208. ⟨10.3354/meps10792⟩ Article dans une revue hal-03502779v1
Automatic recognition of T and teleseismic P waves by statistical analysis of their spectra: An application to continuous records of moored hydrophones Alexey Sukhovich,Jean-Olivier Irisson,Julie Perrot,Guust Nolet Journal of Geophysical Research, 2014, 119 (8), pp.6469-6485. ⟨10.1002/2013JB010936⟩ Article dans une revue istex insu-01058954v1
Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front Jessica Y. Luo,Benjamin Grassian,Dorothy Tang,Jean-Olivier Irisson,Adam T. Greeret al. Marine Ecology Progress Series, 2014, 510, pp.129-149. ⟨10.3354/meps10908⟩ Article dans une revue hal-03502777v1
Reef Odor: A Wake Up Call for Navigation in Reef Fish Larvae Claire B. Paris,Jelle Atema,Jean-Olivier Irisson,Michael Kingsford,Gabriele Gerlachet al. PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0072808⟩ Article dans une revue hal-03502626v1
Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in East Antarctica Carolina Giraldo,Patrick Mayzaud,Eric Tavernier,Jean-Olivier Irisson,Florian Penotet al. Marine Biology, 2013, 160 (4), pp.877-887. ⟨10.1007/s00227-012-2141-0⟩ Article dans une revue istex hal-00936923v1
Effect of gaseous cement industry effluents on four species of microalgae Amélie Talec,Myrvline Philistin,Frédérique Ferey,Günther Walenta,Jean-Olivier Irissonet al. Bioresource Technology, 2013, 143, pp.353 - 359. ⟨10.1016/j.biortech.2013.05.104⟩ Article dans une revue hal-00852260v1
Biophysical modelling to investigate the effects of climate change on marine population dispersal and connectivity Christophe Lett,Sakina-Dorothée Ayata,Martin Huret,Jean-Olivier Irisson Progress in Oceanography, 2010, 87 (1-4, SI), pp.106-113. ⟨10.1016/j.pocean.2010.09.005⟩ Article dans une revue hal-01218855v1
Identifying coral reef fish larvae through DNA barcoding : a test case with the families Acanthuridae and Holocentridae Nicolas Hubert,Erwan Delrieu-Trottin,Jean-Olivier Irisson,Christopher Meyer,Serge Planes Molecular Phylogenetics and Evolution, 2010, 55 (3), pp.1195-1203. ⟨10.1016/j.ympev.2010.02.023⟩ Article dans une revue hal-00609382v1
In situ observation of settlement behaviour in larvae of coral reef fishes at night Jean-Olivier Irisson,David Lecchini Journal of Fish Biology, 2008, 72, pp.1-7. ⟨10.1111/j.1095-8649.2008.01868.x⟩ Article dans une revue istex halsde-00293976v1

Communication dans un congrès (64)

Temporal changes in population connectivity of the gorgonian Paramuricea Clavata in the northwestern Mediterranean Sea Camille Sant,Didier Forcioli,Katell Guizien,Lorenzo Bramanti,Federica Costantiniet al. European Coral Reef Symposium, Jul 2024, Napoli, Italy Communication dans un congrès hal-05545126v1
Assessing uncertainty in population connectivity estimates from genetic data: a benchmark of commonly used methods and tools on simulated datasets Camille Sant,Didier Forcioli,Cécile Fauvelot,Jean-Olivier Irisson 7th International Conference on Marine Connectivity, May 2024, Montpellier, France Communication dans un congrès hal-05549748v1
Use of CMIP6 biogeochemical simulations to assess the effect of climate forcing on plankton size structure Marco Vinicio Corrales,Colleen Petrik,Mathilde Dugenne,Todd O'Brien,Lars Stemmannet al. 2024 Ocean Sciences Meeting, 2024, New Orleans, Louisiana, United States Communication dans un congrès hal-04638965v1
In situ imaging highlight the important role of giant mesopelagic protists in the biogeochemical cycles of carbon and silicon Manon Laget,Laetitia Drago,Thelma Panaiotis,Rainer Kiko,Lars Stemmannet al. Ocean Science Meeting 2024 (OSM24), American Geophysical Union (AGU); Association for the Sciences of Limnology and Oceanography (ASLO); Oceanography Society (TOS), Feb 2024, New Orleans, Louisiana, United States Communication dans un congrès hal-04638966v1
Morphological diversity increases with decreasing resources along a zooplankton time series Miriam Beck,Lionel Guidi,Lars Stemmann,Sakina-Dorothée Ayata,Jean-Olivier Irisson ASLO Aquatic Sciences Meeting, 2023, Palma de Mallorca, Spain Communication dans un congrès hal-04639094v1
Travaux récents sur le zooplancton Arctique Sakina-Dorothée Ayata,Frédéric Maps,Jean-Olivier Irisson Colloque Université Laval - Sorbonne Université sur les Sciences Marines Arctiques, May 2023, Paris, France Communication dans un congrès hal-04230345v1
Fat chance : estimating the lipid content of Arctic zooplankton from in situ images Frédéric Maps,Alexandra Mercier,Eric C Orenstein,Laure Vilgrain,Jean-Olivier Irissonet al. SFE2 GFÖ EEF 2022 Conference, SFE2 GFÖ EEF, Nov 2022, Metz, France Communication dans un congrès hal-04230315v1
Observing plankton in the open ocean with quantitative imaging Jean-Olivier Irisson Sustainability Research and Innovation Congress, 2022, Pretoria, South Africa Communication dans un congrès hal-04026445v1
Machine learning for plankton and particles images: from pictures to data Jean-Olivier Irisson,Team Complex Imaginecology, 2022, Lyon, France Communication dans un congrès hal-04026446v1
A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits Miriam Beck,Sakina-Dorothée Ayata,Marc Picheral,Fabien Lombard,Rainer Kikoet al. SFEcologie 2022, Nov 2022, Metz, France Communication dans un congrès hal-04026448v1
Morphological diversity increases with oligotrophy along a zooplankton time-series M. Beck,Sakina-Dorothée Ayata,C. Cailleton,L. Stemmann,L Guidiet al. 4th Marine Imaging Workshop, 2022, Brest, France Communication dans un congrès hal-04024037v1
Astaxanthin as an indicator of copepod fitness - From indiviudal pigmentation to ecosystem functioning Laure Vilgrain,Frédéric Maps,Emilia Trudnowska,Sünnje Linnéa Basedow,Barbara Niehoffet al. Fourth ICES PICES Early Career Scientist Conference, Jul 2022, St Johns, Newfoundland, Canada Communication dans un congrès hal-04230329v1
Easily Interpretable, Non-parametric Sample Transformation for Classification Cédric Dubois,Jean-Olivier Irisson,Eric Debreuve Colloque GRETSI (Groupe de Recherche et d'Etudes de Traitement du Signal et des Images), Sep 2022, Nancy, France Communication dans un congrès hal-03866959v1
EcoTaxa: a tool to support the taxonomic classification of large datasets through supervised machine learning Jean-Olivier Irisson,Laurent Salinas,Sebastien Colin,Team Complex,Marc Picheral SFEcologie 2022, 2022, Metz, France Communication dans un congrès hal-04026447v1
A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5 Rainer Kiko,Marc Picheral,David Antoine,Marcel Babin,Léo Berlineet al. Aquatic Sciences Meeting, 2021, Online, Unknown Region Communication dans un congrès hal-04024038v1
Benchmark of image classification using several large plankton datasets: Convolutional Neural Networks improve detection of rare taxa Thelma Panaiotis,Guillaume Boniface-Chang,Gabriel Dulac-Arnold,Benjamin Blanc,Tristan Biardet al. ASLO 2021 Aquatic Sciences Meeting, Association for the Sciences of Limnology and Oceanography - ASLO, Jun 2021, Online, Unknown Region Communication dans un congrès hal-04026436v1
Could color be an indicator of copepod fitness? A focus on carotenoid pigmentation Laure Vilgrain,Frederic Maps,Emilia Trudnowska,Sünnje L. Basedow,Amin Madouiet al. Aquatic Sciences Meeting, 2021, Online, Unknown Region Communication dans un congrès hal-04026438v1
Exploring and exploiting new tools for functional trait extraction from in situ plankton images Eric C. Orenstein,Frederic Maps,Sakina-Dorothée Ayata,Jean-Olivier Irisson Aquatic Sciences Meeting, 2021, Online, Unknown Region Communication dans un congrès hal-04026439v1
Working towards integration of new data describing biological essential ocean variables from marine coastal ecosystems Veronique Creach,Patricia Cabrera,Luis Felipe Artigas,Gérald Grégori,Jean-Olivier Irissonet al. ASLO 2021 Aquatic Sciences Meeting, Association for the Sciences of Limnology and Oceanography, Jun 2021, Virtual, Unknown Region Communication dans un congrès hal-04026440v1
Phytoplankton automated in vivo/in situ observations: towards a new approach of Essential Ocean Variables of marine coastal ecosystems. Luis Felipe Artigas,Patricia Cabrera,Pascal Claquin,Véronique Créach,Clémentine Gallotet al. ASLO 2021 Aquatic Sciences Meeting, Association for the Sciences of Limnology and Oceanography, Jun 2021, Palma de Mallorca - Iles Baléares, Spain Communication dans un congrès hal-04543083v1
Correction of the estimation of the volume of copepods from 2-dimensional in situ images Cédric Dubois,Jean-Olivier Irisson,Eric Debreuve ASLO Aquatic Sciences Meeting, Jun 2021, Online, Spain Communication dans un congrès hal-03449924v1
Morphological traits of zooplankton reveal ecological patterns along ice melt dynamics in the Arctic Laure Vilgrain,Jean-Olivier Irisson,Sakina-Dorothée Ayata,Marc Picheral,Marcel Babinet al. Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region Communication dans un congrès hal-04026431v1
Morphological diversity increases with oligotrophy along a zooplankton time series Jean-Olivier Irisson,Caroline Cailleton,Corinne Desnos,Laëtitia Jalabert,Amanda Elineauet al. Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region Communication dans un congrès hal-04026432v1
UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms Marc Picheral,Emna Abidi,François Berry,Jerome Coindat,Denis Brousseauet al. Ocean Sciences Meeting, 2020, San Diego, United States Communication dans un congrès hal-04026430v1
Coordinating Efforts to Define Marine Plankton Imagery Data and Metadata Best Practices and Standards Patricia Martin-Cabrera,Fabien Lombard,Jean-Olivier Irisson,Lars Stemmann,Klas Mölleret al. Biodiversity Information Science and Standards, 2020, Online, Unknown Region. pp.e58932, ⟨10.3897/biss.4.58932⟩ Communication dans un congrès hal-04026442v1
Towards a global in situ monitoring of plankton using imaging systems: lessons learnt from the past 10 years of observation in Europe Lars Stemmann,Jean-Baptiste Romagnan,Alain Lefebvre,Gérald Grégori,Jean-Olivier Irissonet al. 2019 IMBeR Open Science Conference, Integrated Marine Biosphere Research - IMBeR, Jun 2019, Brest, France Communication dans un congrès hal-04026399v1
Porites astreoides throughout the Caribbean: the success of one or several species? C. Fauvelot,F. Riquet,C. Daguin-Thiébaut,F. Nuñes,A. Japaudet al. International Marine Connectivity (iMarCo) Conference, 2019, Aveiro, Portugal Communication dans un congrès hal-04023520v1
Using species functional traits to explore the potential impacts of climate change(s) on plankton functional diversity Fabio Benedetti,Sakina-Dorothée Ayata,François Guilhaumon,Jean-Olivier Irisson,Fanny Adloff IMBeR, 2019, Brest, France Communication dans un congrès hal-04026434v1
Larval fish behavior nuances Hjort's aberrant drift hypothesis Robin Faillettaz,Claire B. Paris,Elysanne Durand,Agathe Blandin,Philippe Koubbiet al. Larval Fish Conference, 2019, Plama de Mallorca, Spain Communication dans un congrès hal-04026419v1
Imperfect automatic image classification successfully describes plankton distribution patterns Robin Faillettaz,Marc Picheral,Jessica Y. Luo,Cédric M. Guigand,Robert K. Cowenet al. Workshop on Machine Learning in Marine Sciences, 2018, Copenhagen, Denmark Communication dans un congrès hal-04026425v1
Morphological diversity increases with oligotrophy along a zooplankton time series C. Cailleton,Corinne Desnos,Laëtitia Jalabert,Amanda Elineau,Lars Stemmannet al. SFEcologie 2018, 2018, Rennes, Unknown Region Communication dans un congrès hal-04026401v1
EcoTaxa: A human-computer interface to classify images along a taxonomy with the help of machine-learning Jean-Olivier Irisson,Simon-Martin Schröder,Marc Picheral Workshop on Machine Learning in Marine Sciences, 2018, Copenhagen, Denmark Communication dans un congrès hal-04026424v1
Environmental effects on larval fish ontogenetic vertical migration Claire B. Paris,Robin Faillettaz,Jean-Olivier Irisson Larval Fish Conference, 2018, Victoria, British Columbia, Canada Communication dans un congrès hal-04026421v1
Monitoring plankton in the open ocean with quantitative imaging Jean-Olivier Irisson Intergovernmental Conference on Marine Biodiversity of Areas Beyond National Jurisdiction, 2018, United Nations, New-York, USA, Unknown Region Communication dans un congrès hal-04026423v1
Quantitative image processing with machine learning: How to turn images into data Jean-Olivier Irisson,Simon-Martin Schröder,Marc Picheral Aquatic research models to study regeneration and aging, 2018, Nice, France Communication dans un congrès hal-04026422v1
Larval fish swimming behavior alters dispersal patterns from marine protected areas in the North-Western Mediterranean Sea Robin Faillettaz,Claire B. Paris,Jean-Olivier Irisson Larval Fish Conference, 2018, Victoria, British Columbia, Canada Communication dans un congrès hal-04026420v1
Lagrangian Observations and Modeling of Marine Larvae Claire B. Paris,Jean-Olivier Irisson EGU General Assembly, 2017, Vienna, Austria Communication dans un congrès hal-04026435v1
Spatio-temporal variations of the planktonic communities in a North Atlantic Marine Protected Area and their potential links with Sardina pilchardus (Walbaum, 1792) catches Fabio Benedetti,Laëtitia Jalabert,Marc Sourisseau,Beatriz Beker,Amanda Elineauet al. COAST, 2017, Bordeaux, Unknown Region Communication dans un congrès hal-04026402v1
Swimming speeds of Mediterranean settlement-stage fish larvae nuance Hjort's aberrant drift hypothesis Robin Faillettaz,Elysanne Durand,Claire B. Paris,Philippe Koubbi,Jean-Olivier Irisson SFEcologie 2016, 2016, Marseille, Unknown Region Communication dans un congrès hal-04026406v1
Projected shifts in copepod surface communities in the Mediterranean Sea under several climate change scenarios Fabio Benedetti,François Guilhaumon,Fanny Adloff,Jean-Olivier Irisson,Sakina-Dorothée Ayata Ocean Sciences Meeting, 2016, New Orleans, United States Communication dans un congrès hal-04026400v1
Les larves de poissons Méditerranéens, championnes de la course d’orientation Robin Faillettaz,Jean-Olivier Irisson,Philippe Koubbi,Philippe Koubbi,Claire B. Pariset al. DRIVER-SUBLIMO, 2015, Les Embiez, France Communication dans un congrès hal-04026429v1
Multidimensional Ecosystem Services Index (MESI) Charles Figuières,Jean-Olivier Irisson,Gabriel Reygondeau,Maria Noël Pi Alperin,Mariam Syet al. MISTRALS Workshop, 2015, Marseille, France Communication dans un congrès hal-04026428v1
Fine-scale distribution of zooplankton over a mesoscale front explored through high frequency imaging Jean-Olivier Irisson,Robin Faillettaz,Jessica Y. Luo,Cédric M. Guigand,Robert K. Cowen Aquatic Sciences Meeting, 2015, Granada, Unknown Region Communication dans un congrès hal-04026408v1
Multidimensional Ecosystem Services Index (MESI) Jean-Olivier Irisson,Mariam Sy,Charles Figuières FAERE Workshop, 2015, Villefranche sur mer, France Communication dans un congrès hal-04026427v1
Behaviour versus oceanic currents during the dispersal of larval fish in the Northwestern Mediterranean sea Robin Faillettaz,Agathe Blandin,Elysanne Durand,Claire B. Paris,Jean-Olivier Irisson Aquatic Sciences Meeting, 2015, Granada, Unknown Region Communication dans un congrès hal-04026407v1
Impact of climate change on planktonic ecoregions of the mediterranean sea Sakina-Dorothée Ayata,Gabriel Reygondeau,Fabio Benedetti,Jean-Olivier Irisson,Cécile Guieu ACCOBAMS Workshop on Climate Change, 2014, Monaco, France Communication dans un congrès hal-04026414v1
Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front Jessica Y. Luo,Benjamin Grassian,Dorothy Tang,Jean-Olivier Irisson,Adam T. Greeret al. ICES, 2014, A Coruña, Spain Communication dans un congrès hal-04026416v1
Ecological geography of the Mediterranean Sea Gabriel Reygondeau,Jean-Olivier Irisson,Camille Albouy,Sakina-Dorothée Ayata,Fabio Benedettiet al. IMBER, 2014, Bergen, Norway Communication dans un congrès hal-04026417v1
Mediterranean biodiversity (from phytoplankton to top predators) and present threats Gabriel Reygondeau,Camille Albouy,Tarek Hattab,Fabio Benedetti,Jean-Olivier Irissonet al. ICES, 2014, A Coruña, Spain Communication dans un congrès hal-04026418v1
Fine-scale distribution of larval fish and zooplankton over a mesoscale front explored through high frequency imaging Robin Faillettaz,Jessica Y. Luo,Cédric M. Guigand,Robert K. Cowen,Jean-Olivier Irisson Ocean Sciences Meeting, 2014, Honolulu, HI, USA, Unknown Region Communication dans un congrès hal-04026415v1
Present status of Mediterranean marine biodiversity and potential anthropogenic threat Gabriel Reygondeau,Camille Albouy,Tarek Hattab,Fabio Benedetti,Jean-Olivier Irissonet al. IARU Sustainability Science Congress, 2014, Copenhagen, Denmark Communication dans un congrès hal-04026409v1
MERMAIDs: First observations of teleseismic P-waves with freely floating submarine robots Alexey Sukhovich,Jean-Olivier Irisson,S. Bonnieux,F. J. Simons,A. Ogéet al. IAHS-IAPSO-IASPEI Joint Assembly, 2013, Gothenburg, Sweden Communication dans un congrès hal-04026413v1
autoplot: ready made plots with ggplot2 Jean-Olivier Irisson Rencontres R, 2013, Lyon, France Communication dans un congrès hal-04026411v1
Toward a dynamic biogeochemical division of the Mediterranean Sea in a context of global climate change Gabriel Reygondeau,Jean-Olivier Irisson,Cécile Guieu,S. Gasparini,Sakina-Dorothée Ayataet al. EGU General Assembly, 2013, Vienna, Austria Communication dans un congrès hal-04026412v1
Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in the East Antarctica. Carolina Giraldo,P. Mayzaud,E. Tavernier,Jean-Olivier Irisson,F. Penotet al. 36th Larval Fish Conference, 2012, Bergen, Norway Communication dans un congrès hal-04026403v1
Lipid condition of Pleuragramma antarcticum larvae C. Giraldo,P. Mayzaud,E. Tavernier,Jean-Olivier Irisson,J. Becciuet al. 5th Rencontres de l'Ichtyologie de France, 2012, Paris, France Communication dans un congrès hal-04026405v1
Detecting hydrologic seasons in a long term monitoring time series Jean-Olivier Irisson,A. Webb,O. Passafiume,L. Mousseau Time-series analysis in marine science and applications for industry, 2012, Brest, France Communication dans un congrès hal-04026410v1
Calcifying pteropod time series provides a baseline against which to measure local environmental change E. Howes,C. Assailly,Jean-Olivier Irisson,L. Stemmann Time-series analysis in marine science and applications for industry, 2012, Brest, Unknown Region Communication dans un congrès hal-04026404v1
A probabilistic approach to the discrimination of underwater acoustic signals generated by teleseismic P-waves Alexey Sukhovich,Jean-Olivier Irisson,A. Ogé,F. J. Simons,A. Deschampset al. EGU General Assembly, 2011, Vienna, Austria Communication dans un congrès hal-03996395v1
Ontogenetic vertical &quot;migration&quot; in coral-reef fish larvae communities and its consequences for dispersal Jean-Olivier Irisson,Claire B. Paris,Robert K. Cowen,Serge Planes ASLO Aquatic Sciences Meeting, 2009, Nice, France Communication dans un congrès hal-03996396v1
The importance of behavior on self-recruitment : a modelling approach J.-O. Irisson,C. Paris,L. Cherubin,Michel de Lara,S. Planes 11th International Coral Reef Symposium, Jul 2008, Fort Lauderdale, United States Communication dans un congrès halsde-00332226v1
Orientation With No Frame of Reference (OWNFOR): A novel system to observe and quantify orientation in reef fish larvae Claire B. Paris,Cédric M. Guigand,Jean-Olivier Irisson,Rebecca Fisher,Evan d'Alessandro Caribbean Connectivity: Implications for Marine Protected Area Management. Proceedings of a Special Symposium, 9-11 November 2006, 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize City, Belize, 2008, Silver Spring, MD, Unknown Region. pp.52--62 Communication dans un congrès hal-03996410v1
The importance of behavior for self-recruitment: a modelling approach Jean-Olivier Irisson,Claire B. Paris,Michel de Lara,Serge Planes International Coral Reef Symposium, 2008, Fort Lauderdale, FL, USA, Unknown Region Communication dans un congrès hal-03996409v1
Lagrangian or not lagrangian? Jean-Olivier Irisson,Michel de Lara,Serge Planes 3rd Lagrangian Analysis and Prediction of Coastal and Ocean Dynamics Meeting, Jun 2005, Lerici, Italy Communication dans un congrès hal-03955325v1

Poster de conférence (15)

From connection to conservation: temporal trends in coastal populations connectivity and implications for marine spatial planning Camille Sant,Axelle Fleury,Katell Guizien,Lorenzo Bramanti,Federica Costantiniet al. One Ocean Science Congress, Jun 2025, Nice, France Poster de conférence hal-05549771v1
Time-structured genomic sampling reveals abrupt and rare genetic shifts in Eunicella singularis populations, challenging snapshot connectivity estimates Camille Sant,Jessica dos Santos,Didier Forcioli,Lorenzo Bramanti,Federica Costantiniet al. European Society for Evolutionary Biology Congress, Aug 2025, Barcelona, Spain Poster de conférence hal-05549898v1
Using new observations and Machine Learning to improve organic sinking processes in the PlankTOM global ocean biogeochemical model Anna Denvil-Sommer,C. Le Quéré,E. T. Buitenhuis,Lionel Guidi,Jean-Olivier Irisson EGU General Assembly, 2021, Online, Unknown Region. 2021 Poster de conférence hal-04018680v1
Globally consistent quantitative observations of planktonic ecosystems Fabien Lombard,Emmanuel Boss,J.-O. Irisson Ocean Obs'19, 2019, Honolulu, HI, USA, Unknown Region. 2019 Poster de conférence hal-04018679v1
Sun-compass orientation in Mediterranean fish larvae Claire B. Paris,Robin Faillettaz,Agathe Blandin,Philippe Koubbi,Jean-Olivier Irisson Larval Fish Conference, 2019, Palma de Mallorca, Spain. 2019 Poster de conférence hal-04018676v1
Spatio-temporal patterns of larval fish settlement in the Northwestern Mediterranean Sea Robin Faillettaz,Raphaël Voué,Romain Crec'Hriou,Laure-Hélène Garsi,Gilles Lecaillonet al. Larval Fish Conference, 2019, Palma de Mallorca, Spain. 2019 Poster de conférence hal-04018675v1
Small-scale horizontal distribution patterns of nematodes in deep NW Mediterranean surface sediments (DYFAMED-BENTHOS 2003) Laurence Guidi-Guilvard,Serge Dallot,Jean-Olivier Irisson 17th International Meiofauna Conference, 2019, Évora, Portugal. 2019 Poster de conférence hal-04018669v1
Quantitative imaging for global observations of planktonic ecosystems Fabien Lombard,Jean-Olivier Irisson,Marc Picheral Ocean Obs'19, 2019, Honolulu, HI, USA, Unknown Region. 2019 Poster de conférence hal-04018678v1
Visualisation dynamique des données d'observation Jean-Olivier Irisson EVOLECO, 2017, Bordeaux, France. 2017 Poster de conférence hal-04018677v1
Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front Jessica Y. Luo,Benjamin Grassian,Dorothy Tang,Jean-Olivier Irisson,Adam T. Greeret al. Ocean Sciences Meeting, 2014, Honolulu, HI, USA, Unknown Region. 2014 Poster de conférence hal-04018674v1
Drivers of temporal variability of larval fish abundance in villefranche bay (Northwestern Mediterranean Sea) over a 7-year time series (2006-2012) Robin Faillettaz,Jean-Olivier Irisson Laval Fish Conference, 2013, Miami, FL, USA, Unknown Region. 2013 Poster de conférence hal-04018673v1
Ecoregionalisation of the Mediterranean Sea Gabriel Reygondeau,Jean-Olivier Irisson,Camille Albouy,Sakina-Dorothée Ayata,Fabio Benedettiet al. CIESM, 2013, Marseille, France. 2013 Poster de conférence hal-04018672v1
Distribution and biogeography of the copepods in the mediterranean sea Fabio Benedetti,Gabriel Reygondeau,Jean-Olivier Irisson,Stéphane Gasparini,Philippe Koubbiet al. 40ème Congrès Commission Internationale pour l'Exploration Scientifique de la mer Méditerranée (CIESM 2013), Oct 2013, Marseille, France. , 2013 Poster de conférence hal-04018670v1
Orientation With No Frame of Reference (OWNFOR): An in situ system to detect and measure orientation in pelagic reef fish larvae Jean-Olivier Irisson,Claire B. Paris,Cédric M. Guigand,Rebecca Fisher Ocean Sciences Meeting, 2006, Honolulu, HI, USA, Unknown Region. 2006 Poster de conférence hal-04018671v1
Influence of biophysical processes on coral reef fish population connectivity inferred by modeling Claire B. Paris,A. Srinivasan,Laurent M. Chérubin,Jean-Olivier Irisson,Serge Planeset al. Workshop on advancements in modeling physical-biological interactions in fish early-life history (WKAMF), 2006, Nantes, France. Workshop on advancements in modeling physical-biological interactions in fish early-life history (WKAMF), 2006 Poster de conférence hal-03955324v1

Proceedings/Recueil des communications (2)

Low-shot learning of plankton categories Simon-Martin Schröder,Rainer Kiko,Jean-Olivier Irisson,Reinhard Koch 11269, 2019, 978-3-030-12939-2. ⟨10.1007/978-3-030-12939-2_27⟩ Proceedings/Recueil des communications hal-03390570v1
Book of abstracts of the ARTIFACTZ Workshop Artificial intelligence for characterizing plankton traits from images Frédéric Maps,Jean-Olivier Irisson,Sakina-Dorothée Ayata 2019 Proceedings/Recueil des communications hal-02862387v1

Chapitre d'ouvrage (5)

Chapter 6.9 Southern Ocean Euphausiids J. Cuzin-Roudy,Jean-Olivier Irisson,F. Penot,S. Kawaguchi,C. Vallet De Broyer; C. and Koubbi; Philippe and Griffiths; H. J. and Raymond; Ben and Udekem d'Acoz; C. and et al. Biogeographic Atlas of the Southern Ocean, Scientific Committee on Antarctic Research, pp.309--320, 2014 Chapitre d'ouvrage hal-04018638v1
Chapter 7 Biogeographic patterns of fish Guy Duhamel,Percy-Alexander Hulley,Romain Causse,Philippe Koubbi,Marino Vacchiet al. De Broyer; C. and Koubbi; Philippe and Griffiths; H. J. and Raymond; Ben and Udekem d'Acoz; C. and et al. Biogeographic Atlas of the Southern Ocean, Scientific Committee on Antarctic Research, pp.328--362, 2014 Chapitre d'ouvrage hal-04018637v1
Chapter 2.3 Distribution modelling S. Mormède,Jean-Olivier Irisson,Ben Raymond De Broyer; C. and Koubbi; Philippe and Griffiths; H. J. and Raymond; Ben and Udekem d'Acoz; C. and et al. Biogeographic Atlas of the Southern Ocean, Scientific Committee on Antarctic Research, pp.27--29, 2014 Chapitre d'ouvrage hal-04018639v1
Biological processes: Behaviour and settlement Jean-Olivier Irisson,Jeffrey M. Leis,Claire B. Paris,Howard Browman North, Elizabeth and Gallego, Alejandro and Petitgas, Pierre. Manual of recommended practices for modelling physical-biological interactions during fish early life, 295, ICES Cooperative Research Report, pp.42--59, 2009 Chapitre d'ouvrage hal-04018641v1
Application 2: Connectivity Claire B. Paris,Jean-Olivier Irisson,Geneviève Lacroix,Øyvind Fiksen,Jeffrey M. Leiset al. North, Elizabeth and Gallego, Alejandro and Petitgas, Pierre. Manual of recommended practices for modelling physical-biological interactions during fish early life, 295, ICES Cooperative Research Report, pp.63--76, 2009 Chapitre d'ouvrage hal-04018640v1

Thèse (1)

Behavioural approach to larval dispersal in marine systems Jean-Olivier Irisson Sciences du Vivant [q-bio]. Ecole pratique des hautes études - EPHE PARIS, 2008. Français. ⟨NNT : ⟩ Thèse tel-00344625v1

HDR (1)

Towards a computational ecology of plankton Jean-Olivier Irisson Biodiversity and Ecology. Sorbonne Université, 2020 HDR tel-04018620v1