Jonathan D'AMBROSIO

Publications

Article dans une revue (12)

Remarkable heterogeneity revealed in the genetic architecture of resistance to a key bacterial pathogen in two commercial rainbow trout populations Simon Pouil,Dimitri Rigaudeau,Bo-Hyung Lee,Emilien Segret,Alexandre Desgrangeset al. BMC Genomics, 2025, 27 (1), pp.49. ⟨10.1186/s12864-025-12231-3⟩ Article dans une revue hal-05476583v1
Genomic selection for resistance to one pathogenic strain of Vibrio splendidus in blue mussel Mytilus edulis Munusamy Ajithkumar,Jonathan D’ambrosio,Marie-Agnes Travers,Romain Morvezen,Lionel Degremont Frontiers in Genetics, 2025, 15, ⟨10.3389/fgene.2024.1487807⟩ Article dans une revue hal-04879890v1
High-density genome-wide association study points out major candidate genes for resistance to infectious pancreatic necrosis in rainbow trout Jonathan D’ambrosio,Yoannah François,Thierry Morin,Sébastien Courant,Alexandre Desgrangeset al. Genetics Selection Evolution, 2025, 57 (1), pp.50. ⟨10.1101/2025.04.19.649654⟩ Article dans une revue hal-05156973v2
Genetic architecture of acute hyperthermia resistance in juvenile rainbow trout (Oncorhynchus mykiss) and genetic correlations with production traits Henri Lagarde,Delphine Lallias,Pierre Patrice,Audrey Dehaullon,Martin Prchalet al. Genetics Selection Evolution, 2023, 55 (1), pp.39. ⟨10.1186/s12711-023-00811-4⟩ Article dans une revue hal-04125895v1
Genome-wide association study and genomic prediction of tolerance to acute hypoxia in rainbow trout M Prchal,Jonathan D’ambrosio,Henri Lagarde,Delphine Lallias,P Patriceet al. Aquaculture, 2022, 565, pp.739068. ⟨10.1016/j.aquaculture.2022.739068⟩ Article dans une revue hal-03944462v1
Genetic architecture and genomic selection of fatty acid composition predicted by Raman spectroscopy in rainbow trout Carole Blay,Pierrick Haffray,Jonathan D’ambrosio,Enora Prado,Nicolas Dechampet al. BMC Genomics, 2021, 22 (1), pp.788. ⟨10.1186/s12864-021-08062-7⟩ Article dans une revue hal-03432316v1
Temporal and region‐specific variations in genome‐wide inbreeding effects on female size and reproduction traits of rainbow trout Katy Paul,Jonathan d'Ambrosio,Florence Phocas Evolutionary Applications, 2021, ⟨10.1111/eva.13308⟩ Article dans une revue hal-03533061v1
Genetic parameters and genome-wide association studies of quality traits characterised using imaging technologies in Rainbow trout, Oncorhynchus mykiss Carole Blay,Pierrick Haffray,Jérôme Bugeon,Jonathan D’ambrosio,Nicolas Dechampet al. Frontiers in Genetics, 2021, 12, pp.1-17. ⟨10.3389/fgene.2021.639223⟩ Article dans une revue hal-03154333v1
Genetic architecture and genomic selection of female reproduction traits in rainbow trout J. D’ambrosio,Romain Morvezen,S. Brard-Fudulea,Anastasia Bestin,A. Acin Perezet al. BMC Genomics, 2020, 21 (1), pp.1-14. ⟨10.1186/s12864-020-06955-7⟩ Article dans une revue hal-02938176v1
Rainbow trout resistance to bacterial cold water disease: two new quantitative trait loci identified after a natural disease outbreak on a French farm Clémence Fraslin,S. Brard‐fudulea,Jonathan d'Ambrosio,Anastasia Bestin,Mathieu Charleset al. Animal Genetics, 2019, 50 (3), pp.293-297. ⟨10.1111/age.12777⟩ Article dans une revue hal-02166481v1
Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding Jonathan D’ambrosio,Florence Phocas,Pierrick Haffray,Anastasia Bestin,Sophie Brard-Fuduleaet al. Genetics Selection Evolution, 2019, 51 (1), pp.26. ⟨10.1186/s12711-019-0468-4⟩ Article dans une revue hal-02151750v1
Ecological and sanitary impacts of bacterial communities associated to biological invasions in African commensal rodent communities C. Lippens,Christophe Diagne,Maxime Galan,Lucie Tamisier,Jonathan D’ambrosioet al. Scientific Reports, 2017, 7 (1), art. 14995 [11 p.]. ⟨10.1038/s41598-017-14880-1⟩ Article dans une revue hal-01792669v1

Communication dans un congrès (20)

HIGH-DENSITY GENOME-WIDE ASSOCIATION STUDY IN TWO COHORTS OF RAINBOW TROUT IDENTIFIES CANDIDATE GENES FOR RESISTANCE TO INFECTIOUS PANCREATIC NECROSIS Jonathan D’ambrosio,Yoannah François,Thierry Morin,Sébastien Courant,Nicolas Picchiet al. International Symposium on Genetics in Aquaculture (ISGA XV), May 2025, Cadiz, Spain Communication dans un congrès hal-05103203v1
High-density genome-wide association study in two cohorts of rainbow trout identifies candidate genes for resistance to infectious pancreatic necrosis Jonathan D’ambrosio,Yoannah François,Thierry Morin,Sébastien Courant,Alexandre Desgrangeset al. 22nd International Conference on Diseases of Fish and Shellfish, Sep 2025, Heraklion, Greece Communication dans un congrès hal-05297875v1
High-density genome-wide association study in two cohorts of rainbow trout identifies candidate genes for resistance to infectious pancreatic necrosis Jonathan D’ambrosio,Yoannah François,Thierry Morin,Sébastien Courant,Alexandre Desgrangeset al. 22nd International Conference on Diseases of Fish and Shellfish, Sep 2025, Heraklion, Greece Communication dans un congrès hal-05268214v1
2014-2024 : MISE EN PLACE ET EVOLUTION DE LA SÉLECTION GÉNOMIQUE DANS LA FILIÈRE AQUACOLE FRANÇAISE Jonathan D’ambrosio,Romain Morvezen,Florence Phocas,François Allal,Marc Vandeputteet al. Journées de la Recherche Filière Piscicole, ITAVI, Jul 2024, Rennes, France Communication dans un congrès hal-04796774v1
Régions de génome associées à la résistance à la flavobactériose chez deux populations françaises de truite arc-en-ciel Simon Pouil,Dimitri Rigaudeau,Tatiana Rochat,Bo-Hyung Lee,Emilien Segretet al. 8èmes Journées de la Recherche Piscicole, Jul 2024, Rennes, France Communication dans un congrès hal-05109333v1
Quantitative trait loci for resistance to Flavobacterium psychrophilum identified using high-density genotyping in rainbow trout French selected lines Simon Pouil,Dimitri Rigaudeau,Tatiana Rochat,Bo-Hyung Lee,Emilien Segretet al. Aquaculture Europe, Sep 2023, Vienna, Austria Communication dans un congrès hal-04745285v1
CASDAR ABEILLE : Première estimation de paramètres et de valeurs génétiques chez l'abeille avec l'abeille ligérienne 6 ème Journées Techniques Inter-Filières SYSAAF -11 et 12 octobre, Rennes Jonathan D’ambrosio,Benjamin B. Basso,Florence Phocas,Pierrick Haffray Journées Techniques Interfilières du SYSAAF, Oct 2023, Rennes, France Communication dans un congrès hal-04386716v1
Réduction du coût de la sélection génomique par utilisation de panels à plus faible densité de marqueurs chez le bar et la daurade Jonathan D’ambrosio,Mathieu Besson,Anastasia Bestin,Jean-Sébastien Bruant,Aline Bajeket al. 7. Journées de la Recherche Piscicole, Jul 2022, Paris, France Communication dans un congrès anses-03889117v1
Can genomics improve the selection efficiency of sea bream (Sparus aurata) candidates reared in sanitary protected RAS when GxE exist with the production environment in open-sea cages? Anastasia Bestin,Jonathan D’ambrosio,Mathieu Besson,F Massieu,Alain Vergnetet al. XIV. International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile Communication dans un congrès hal-04185868v1
Genetic parameters and genome-wide association study of resistance to acute hyperthermia in rainbow trout Henri Lagarde,Delphine Lallias,Pierre Patrice,Martin Prchal,Yoannah Françoiset al. World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands Communication dans un congrès hal-03779084v1
OLD AND RECENT INBREEDING EFFECTS ON FEMALE SIZE AND REPRODUCTION TRAITS IN A RAINBOW TROUT SELECTED LINE Katy Paul,Jonathan D’ambrosio,Florence Phocas Genomics in Aquaculture, May 2021, online, France Communication dans un congrès hal-03779072v1
Genome-wide association study of hypoxia stress tolerance in rainbow trout Martin Prchal,Delphine Lallias,Henri Lagarde,Jonathan D’ambrosio,Pierre Patriceet al. Aquaculture Europe 2021, Oct 2021, Funchal (Madeira), Portugal Communication dans un congrès hal-03778912v1
MOLECULAR INBREEDING AND GENETIC LOAD FOR FEMALE REPRODUCTION TRAITS IN A RAINBOW TROUT SELECTED LINE Katy Paul,Jonathan D’ambrosio,Florence Phocas Aquaculture in Europe, Apr 2021, en ligne, France Communication dans un congrès hal-03779048v1
Intérêt et optimisation de la sélection génomique chez la truite arc-en-ciel Jonathan D’ambrosio,Mathilde Dupont-Nivet,Florence Phocas Journées Techniques Interfilières du SYSAAF, Dec 2020, Rennes, France Communication dans un congrès hal-04386533v1
GWAS reveals several genomic regions governing spontaneous XX-maleness in rainbow trout Clémence Fraslin,Anastasia Bestin,Nicolas Dechamp,Jonathan d'Ambrosio,Francine Krieget al. Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany Communication dans un congrès hal-02317177v1
Factors of variation of genomic selection accuracy for female reproduction traits with a constant reference population size of rainbow trouts Jonathan d'Ambrosio,Romain Morvezen,S. Brard-Fudulea,Anastasia Bestin,Pierrick Haffrayet al. Gordon Research Conference - Quantitative genetics and genomics, Feb 2019, Lucca, Italy Communication dans un congrès hal-02788345v1
Development of genomic predictions for female reproduction traits in rainbow trout (Oncorhynchus mykiss) Jonathan d'Ambrosio,Romain Morvezen,S. Brard-Fudulea,Anastasia Bestin,Pierrick Haffrayet al. Gordon Research conference - Quantitative genetics and genomics, Feb 2019, Lucca, Italy Communication dans un congrès hal-02787972v1
Heterogeneity of genetic diversity throughout the genome in rainbow trout populations Jonathan d'Ambrosio,Florence Phocas,Pierrick Haffray,Edwige Quillet,Anastasia Bestinet al. International symposium of Genetics in Aquaculture, International Association for Genetics in Aquaculture (IAGA). INT., Jul 2018, Cairns, Australia Communication dans un congrès hal-02735029v1
Genomic estimates of diversity between and within french rainbow trout populations J. d'Ambrosio,Florence Phocas,Pierrick Haffray,Edwige Quillet,Anastasia Bestinet al. Aqua 2018 - World Aquaculture Society Meeting, Aug 2018, Montpellier, France Communication dans un congrès hal-02193895v1
Utilisation de la métagénomique 16S pour la surveillance de l’émergence de zoonoses bactériennes dans les populations animales Maxime Galan,Maria Razzauti Sanfeliu,Khalilou Bâ,Emilie Bard,Maria Bernardet al. 3. Colloque de Génomique Environnementale, Oct 2015, Montpellier, France Communication dans un congrès hal-02800485v1

Poster de conférence (13)

LactoTruite, a project to increase the resilience of trout farms towards the emergence of lactococcosis in Brittany Yoannah François,Sandrine Baron,Florence Tardy,E. Moreau,Kenny Oberleet al. 22nd International Conference on Diseases of fish and shellfish, Sep 2025, Héraklion (Crete), Greece Poster de conférence hal-05473972v1
QTL FINE MAPPING FOR RESISTANCE TO INFECTIOUS PANCREATIC NECROSIS USING A 665K SNP ARRAY IN RAINBOW TROUT Jonathan d'Ambrosio,Yoannah François,Thierry Morin,Jean Ruche,Alexandre Desgrangeset al. Quantitative Genetics and Genomics Gordon Research Conference, Feb 2025, Lucca (Barga), France Poster de conférence hal-05223807v1
Confirmation de deux QTLs d’importance pour la résistance à la NPI dans une lignée commerciale de truite française Jonathan D’ambrosio,Pierre Patrice,Yoannah François,Thierry Morin,Joëlle Cabonet al. 7emes Journées de la Recherche Filière Piscicole, Jul 2022, Paris, France Poster de conférence hal-04386355v1
Improving resistance to acute hyperthermia by genomic selection to adapt rainbow trout lines to climate change Henri Lagarde,Delphine Lallias,Pierre Patrice,Martin Prchal,Yoannah Françoiset al. International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile. Poster de conférence hal-03778988v1
Interest of artificial intelligence to predict fillet yield in rainbow trout Jonathan D’ambrosio,Tarek Chalioui,Jean Ruche,Alexandre Desgranges,Marc Vandeputteet al. XIV. International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile Poster de conférence hal-04185903v1
Efficiency of genomic selection by imputation in sea bass and sea bream to improve processing traits and resistance to Viral Nervous Necrosis Jonathan D’ambrosio,Anastasia Bestin,Mathieu Besson,Romain Morvezen,Aline Bajeket al. XIV. International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile Poster de conférence hal-04185895v1
GENOME-WIDE ASSOCIATION STUDY OF INFECTIOUS PANCREATIC NECROSIS IN TWO SUCCESSIVE GENERATIONS OF RAINBOW TROUT Jonathan D’ambrosio,Pierre Patrice,Yoannah François,Thierry Morin,Joëlle Cabonet al. Aquaculture Europe 2021, Oct 2021, Madeira, Spain Poster de conférence hal-04385905v1
Estimation de la diversité génétique entre et intra lignées françaises de truite arc en ciel Jonathan d'Ambrosio,Florence Phocas,Pierrick Haffray,Edwige Quillet,Anastasia Bestinet al. 6. Journées de la Recherche Filière Piscicole, Jul 2019, Paris, France. , 2019, Journées de la Recherche Filière Piscicole Poster de conférence hal-02264930v1
QTLs linked to survival and growth of rainbow trout fed a 100% plant-based diet in rainbow trout since the first meal Nicolas Dechamp,Jonathan d'Ambrosio,Frédéric Terrier,Frédéric Cachelou,Anastasia Bestinet al. Aquaculture Europe 2019, Oct 2019, Berlin, Germany. , 1672 p., 2019, Our future: growing from water Poster de conférence hal-02317174v1
Factors of variation of genomic selection accuracy for female reproduction traits with a constant reference population size of rainbow trouts Jonathan D’ambrosio,Romain Morvezen,Sophie Brard-Fudulea,Anastasia Bestin,Pierrick Haffrayet al. Gordon Research Conference on Quantitative Genetics and Genomics, Feb 2019, Lucca (Barga), France Poster de conférence hal-04386586v1
Déterminisme génétique et sélection génomique des caractères de reproduction femelle chez la truite arc-en-ciel J. d'Ambrosio,Romain Morvezen,A. Perez,S. Brard-Fudulea,Anastasia Bestinet al. 6. Journées de la Recherche Piscicole, Jul 2019, Paris, France. , 2019 Poster de conférence hal-02193908v1
Development of genomic predictions for female reproduction traits in rainbow trout (Oncorhynchus mykiss) Jonathan D’ambrosio,Romain Morvezen,Sophie Brard-Fudulea,Anastasia Bestin,Pierrick Haffrayet al. Gordon Research Conference on Quantitative Genetics and Genomics, Feb 2019, Lucca (Barga), Italy Poster de conférence hal-04386578v1
RAINBOW TROUT RESISTANCE TO Flavobacterium psychrophilum: A GENOME WIDE ASSOCIATION STUDY IN A FRENCH POPULATION AFTER A NATURAL DISEASE OUTBREAK Clémence Fraslin,S. Brard-Fudulea,Jonathan d'Ambrosio,Anastasia Bestin,Mathieu Charleset al. AQUA 2018, Aug 2018, Montpellier, France. , 2018, AQUA 2018 Poster de conférence hal-01865605v1

Thèse (1)

Intérêt et optimisation de la sélection génomique chez la truite arc-en-ciel Jonathan d'Ambrosio Génétique animale. Université Paris-Saclay, 2020. Français. ⟨NNT : 2020UPASB030⟩ Thèse tel-03209220v1