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Jonathan Passerat-Palmbach

21
Documents

Presentation

Jonathan Passerat-Palmbach holds a PhD from Blaise Pascal University of Clermont-Ferrand (France). He is currently a research associate at Imperial College London, in the BioMedIA group. His work is focused on high performance computing tools and software engineering applied to simulation and medical image analysis.
Jonathan Passerat-Palmbach holds a PhD from Blaise Pascal University of Clermont-Ferrand (France). He is currently a research associate at Imperial College London, in the BioMedIA group. His work is focused on high performance computing tools and software engineering applied to simulation and medical image analysis.

Publications

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Harnessing Aspect Oriented Programming on GPU: Application to Warp-Level Parallelism (WLP)

Jonathan Passerat-Palmbach , Pierre Schweitzer , Jonathan Caux , Pridi Siregar , Claude Mazel
International Journal of Computer Aided Engineering and Technology, 2015, 7 (2), pp.158-175
Journal articles hal-01099208v1
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TaskLocalRandom: A Statistically Sound Substitute to Pseudorandom Number Generation in Parallel Java Tasks Frameworks

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill
Concurrency and Computation: Practice and Experience, 2014, 27, pp.3383-3398. ⟨10.1002/cpe.3214⟩
Journal articles hal-01098598v1
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Distribution of Random Streams for Simulation Practitioners

David R.C. Hill , Claude Mazel , Jonathan Passerat-Palmbach , Mamadou Kaba Traoré
Concurrency and Computation: Practice and Experience, 2012, 25 (10), pp.1427 - 1442. ⟨10.1002/cpe.2942⟩
Journal articles hal-01099203v1

Parallel stochastic simulations with rigorous distribution of pseudo-random numbers with DistMe: Application to life science simulations

Romain Reuillon , Mamadou Kaba Traoré , Jonathan Passerat-Palmbach , David R.C. Hill
Concurrency and Computation: Practice and Experience, 2012, 24 (7), pp.723 - 738. ⟨10.1002/cpe.1883⟩
Journal articles hal-01814168v1
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Pseudo-Random Streams for Distributed and Parallel Stochastic Simulations on GP-GPU

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill
Journal of Simulation, 2012, pp.141 - 151. ⟨10.1057/jos.2012.8⟩
Journal articles hal-01099194v1
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Privacy-preserving medical image analysis

Alexander Ziller , Jonathan Passerat-Palmbach , Théo Ryffel , Dmitrii Usynin , Andrew Trask
MED-NEURIPS 2020 : Medical Imaging meets NeurIPS, Dec 2020, Online, France
Conference papers hal-03065933v1

Retour d'expérience de l'école OpenMOLE "ExModelo", organisée en partenariat avec le méso-centre du CRIANN

Mathieu Leclaire , Sebastien Rey-Coyrehourcq , Béatrice Charton , Hélène Arduin , Paul Chapron
Journées Calcul et Données 2019, Oct 2019, Toulouse, France
Conference papers halshs-02442620v1

Fostering the use of methods for geosimulation models sensitivity analysis and validation

Romain Reuillon , Mathieu Leclaire , Juste Raimbault , Hélène Arduin , Paul Chapron
ECTQG 2019, Sep 2019, Mondorf, Luxembourg
Conference papers halshs-02283730v1
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Model Exploration Using OpenMOLE - a workflow engine for large scale distributed design of experiments and parameter tuning

Romain Reuillon , Mathieu Leclaire , Jonathan Passerat-Palmbach
IEEE High Performance Computing and Simulation conference 2015, Jun 2015, Amsterdam, Netherlands
Conference papers hal-01163457v1
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OpenMOLE: a Workflow Engine for Distributed Medical Image Analysis

Jonathan Passerat-Palmbach , Mathieu Leclaire , Romain Reuillon , Zehan Wang , Daniel Rueckert
International Workshop on High Performance Computing for Biomedical Image Analysis (part of MICCAI 2014), Sep 2014, Boston, United States
Conference papers hal-01099220v1
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Prototyping Parallel Simulations on Manycore Architectures Using Scala: A Case Study

Jonathan Passerat-Palmbach , Romain Reuillon , Claude Mazel , David R.C. Hill
IEEE High Performance Computing and Simulation (HPCS) 2013, Jul 2013, Helsinki, Finland. pp.405 - 412, ⟨10.1109/HPCSim.2013.6641447⟩
Conference papers hal-01098626v1
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Parallel stepwise stochastic simulation: Harnessing GPUs to Explore Possible Futures States of a Chromosome Folding Model Thanks to the Possible Futures Algorithm (PFA)

Jonathan Passerat-Palmbach , Jonathan Caux , Yannick Le Pennec , Romain Reuillon , Ivan Junier
SIGSIM-PADS’13 - ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS), May 2013, Montreal, Canada. pp.169 - 177, ⟨10.1145/2486092.2486114⟩
Conference papers hal-01098546v1
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Automatic Parallelization of a Gap Model using Java and OpenCL

Jonathan Passerat-Palmbach , Arthur Forest , Julien Pal , Bruno Corbara , David R.C. Hill
European Simulation and Modelling Conference, Oct 2012, Essen, Belgium. pp.24-31
Conference papers hal-01083187v1
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How to Correctly Deal With Pseudorandom Numbers in Manycore Environments - Application to GPU programming with Shoverand

Jonathan Passerat-Palmbach , David R.C. Hill
IEEE High Performance Computing and Simulation conference 2012, Jul 2012, Madrid, Spain. pp.25 - 31, ⟨10.1109/HPCSim.2012.6266887⟩
Conference papers hal-01098579v1
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ThreadLocalMRG32k3a: A Statistically Sound Substitute to Pseudorandom Number Generation in Parallel Java Applications

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill
IEEE High Performance Computing and Simulation conference 2012, Jul 2012, Madrid, Spain. pp.543 - 550, ⟨10.1109/HPCSim.2012.6266971⟩
Conference papers hal-01098552v1
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Pseudo-Random Number Generation on GP-GPU

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill
IEEE/ACM/SCS Workshop on Principles of Advanced and Distributed Simulation, Jun 2011, Nice, France. ⟨10.1109/PADS.2011.5936751⟩
Conference papers hal-01083185v1
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Warp-Level Parallelism: Enabling Multiple Replications In Parallel on GPU

Jonathan Passerat-Palmbach , Jonathan Caux , Pridi Siregar , Claude Mazel , David R.C. Hill
European Simulation and Modelling, Oct 2011, Guimaraes, Portugal
Conference papers hal-01083163v2
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ShoveRand: a Model-Driven Framework to Easily Generate Random Numbers on GP-GPU

Jonathan Passerat-Palmbach , Claude Mazel , Bruno Bachelet , David R.C. Hill
IEEE/ACM International Conference on High Performance Computing and Simulation (HPCS), Jul 2011, Istanbul, Turkey. pp.41-48, ⟨10.1109/HPCSim.2011.5999805⟩
Conference papers hal-01083180v1
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Reliable Initialization of GPU-enabled Parallel Stochastic Simulations Using Mersenne Twister for Graphics Processors

Jonathan Passerat-Palmbach , Claude Mazel , Antoine Mahul , David R.C. Hill
European Simulation and Modelling 2010, Oct 2010, Essen, Belgium. pp.187 - 195
Conference papers hal-01083150v2
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OpenCL: A suitable solution to simplify and unify High Performance Computing developments

Jonathan Passerat-Palmbach , David R.C. Hill
Frederic Magoules. Patterns for Parallel Programming on GPUs, Saxe-Coburg Publications, pp.189-209, 2014, 978-1-874672-57-9
Book sections hal-01098581v1