Jonathan Passerat-Palmbach

21
Documents

Présentation

Jonathan Passerat-Palmbach holds a PhD from Blaise Pascal University of Clermont-Ferrand (France). He is currently a research associate at Imperial College London, in the BioMedIA group. His work is focused on high performance computing tools and software engineering applied to simulation and medical image analysis.

Publications

Publications

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Harnessing Aspect Oriented Programming on GPU: Application to Warp-Level Parallelism (WLP)

Jonathan Passerat-Palmbach , Pierre Schweitzer , Jonathan Caux , Pridi Siregar , Claude Mazel et al.

International Journal of Computer Aided Engineering and Technology, 2015, 7 (2), pp.158-175

Article dans une revue hal-01099208v1
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TaskLocalRandom: A Statistically Sound Substitute to Pseudorandom Number Generation in Parallel Java Tasks Frameworks

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill

Concurrency and Computation: Practice and Experience, 2014, 27, pp.3383-3398. ⟨10.1002/cpe.3214⟩

Article dans une revue hal-01098598v1
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Pseudo-Random Streams for Distributed and Parallel Stochastic Simulations on GP-GPU

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill

Journal of Simulation, 2012, pp.141 - 151. ⟨10.1057/jos.2012.8⟩

Article dans une revue hal-01099194v1
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Distribution of Random Streams for Simulation Practitioners

David R.C. Hill , Claude Mazel , Jonathan Passerat-Palmbach , Mamadou Kaba Traoré

Concurrency and Computation: Practice and Experience, 2012, 25 (10), pp.1427 - 1442. ⟨10.1002/cpe.2942⟩

Article dans une revue hal-01099203v1

Parallel stochastic simulations with rigorous distribution of pseudo-random numbers with DistMe: Application to life science simulations

Romain Reuillon , Mamadou Kaba Traoré , Jonathan Passerat-Palmbach , David R.C. Hill

Concurrency and Computation: Practice and Experience, 2012, 24 (7), pp.723 - 738. ⟨10.1002/cpe.1883⟩

Article dans une revue istex hal-01814168v1
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Privacy-preserving medical image analysis

Alexander Ziller , Jonathan Passerat-Palmbach , Théo Ryffel , Dmitrii Usynin , Andrew Trask et al.

MED-NEURIPS 2020 : Medical Imaging meets NeurIPS, Dec 2020, Online, France

Communication dans un congrès hal-03065933v1

Retour d'expérience de l'école OpenMOLE "ExModelo", organisée en partenariat avec le méso-centre du CRIANN

Mathieu Leclaire , Sebastien Rey-Coyrehourcq , Béatrice Charton , Hélène Arduin , Paul Chapron et al.

Journées Calcul et Données 2019, Oct 2019, Toulouse, France

Communication dans un congrès halshs-02442620v1

Fostering the use of methods for geosimulation models sensitivity analysis and validation

Romain Reuillon , Mathieu Leclaire , Juste Raimbault , Hélène Arduin , Paul Chapron et al.

ECTQG 2019, Sep 2019, Mondorf, Luxembourg

Communication dans un congrès halshs-02283730v1
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Model Exploration Using OpenMOLE - a workflow engine for large scale distributed design of experiments and parameter tuning

Romain Reuillon , Mathieu Leclaire , Jonathan Passerat-Palmbach

IEEE High Performance Computing and Simulation conference 2015, Jun 2015, Amsterdam, Netherlands

Communication dans un congrès hal-01163457v1
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OpenMOLE: a Workflow Engine for Distributed Medical Image Analysis

Jonathan Passerat-Palmbach , Mathieu Leclaire , Romain Reuillon , Zehan Wang , Daniel Rueckert

International Workshop on High Performance Computing for Biomedical Image Analysis (part of MICCAI 2014), Sep 2014, Boston, United States

Communication dans un congrès hal-01099220v1
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Parallel stepwise stochastic simulation: Harnessing GPUs to Explore Possible Futures States of a Chromosome Folding Model Thanks to the Possible Futures Algorithm (PFA)

Jonathan Passerat-Palmbach , Jonathan Caux , Yannick Le Pennec , Romain Reuillon , Ivan Junier et al.

SIGSIM-PADS’13 - ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS), May 2013, Montreal, Canada. pp.169 - 177, ⟨10.1145/2486092.2486114⟩

Communication dans un congrès hal-01098546v1
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Prototyping Parallel Simulations on Manycore Architectures Using Scala: A Case Study

Jonathan Passerat-Palmbach , Romain Reuillon , Claude Mazel , David R.C. Hill

IEEE High Performance Computing and Simulation (HPCS) 2013, Jul 2013, Helsinki, Finland. pp.405 - 412, ⟨10.1109/HPCSim.2013.6641447⟩

Communication dans un congrès hal-01098626v1
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ThreadLocalMRG32k3a: A Statistically Sound Substitute to Pseudorandom Number Generation in Parallel Java Applications

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill

IEEE High Performance Computing and Simulation conference 2012, Jul 2012, Madrid, Spain. pp.543 - 550, ⟨10.1109/HPCSim.2012.6266971⟩

Communication dans un congrès hal-01098552v1
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How to Correctly Deal With Pseudorandom Numbers in Manycore Environments - Application to GPU programming with Shoverand

Jonathan Passerat-Palmbach , David R.C. Hill

IEEE High Performance Computing and Simulation conference 2012, Jul 2012, Madrid, Spain. pp.25 - 31, ⟨10.1109/HPCSim.2012.6266887⟩

Communication dans un congrès hal-01098579v1
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Automatic Parallelization of a Gap Model using Java and OpenCL

Jonathan Passerat-Palmbach , Arthur Forest , Julien Pal , Bruno Corbara , David R.C. Hill

European Simulation and Modelling Conference, Oct 2012, Essen, Belgium. pp.24-31

Communication dans un congrès hal-01083187v1
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Pseudo-Random Number Generation on GP-GPU

Jonathan Passerat-Palmbach , Claude Mazel , David R.C. Hill

IEEE/ACM/SCS Workshop on Principles of Advanced and Distributed Simulation, Jun 2011, Nice, France. ⟨10.1109/PADS.2011.5936751⟩

Communication dans un congrès hal-01083185v1
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Warp-Level Parallelism: Enabling Multiple Replications In Parallel on GPU

Jonathan Passerat-Palmbach , Jonathan Caux , Pridi Siregar , Claude Mazel , David R.C. Hill

European Simulation and Modelling, Oct 2011, Guimaraes, Portugal

Communication dans un congrès hal-01083163v2
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ShoveRand: a Model-Driven Framework to Easily Generate Random Numbers on GP-GPU

Jonathan Passerat-Palmbach , Claude Mazel , Bruno Bachelet , David R.C. Hill

IEEE/ACM International Conference on High Performance Computing and Simulation (HPCS), Jul 2011, Istanbul, Turkey. pp.41-48, ⟨10.1109/HPCSim.2011.5999805⟩

Communication dans un congrès hal-01083180v1
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Reliable Initialization of GPU-enabled Parallel Stochastic Simulations Using Mersenne Twister for Graphics Processors

Jonathan Passerat-Palmbach , Claude Mazel , Antoine Mahul , David R.C. Hill

European Simulation and Modelling 2010, Oct 2010, Essen, Belgium. pp.187 - 195

Communication dans un congrès hal-01083150v2
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OpenCL: A suitable solution to simplify and unify High Performance Computing developments

Jonathan Passerat-Palmbach , David R.C. Hill

Frederic Magoules. Patterns for Parallel Programming on GPUs, Saxe-Coburg Publications, pp.189-209, 2014, 978-1-874672-57-9

Chapitre d'ouvrage hal-01098581v1