Jonathan Passerat-Palmbach

Présentation

Jonathan Passerat-Palmbach holds a PhD from Blaise Pascal University of Clermont-Ferrand (France). He is currently a research associate at Imperial College London, in the BioMedIA group. His work is focused on high performance computing tools and software engineering applied to simulation and medical image analysis.

Publications

Article dans une revue (5)

Harnessing Aspect Oriented Programming on GPU: Application to Warp-Level Parallelism (WLP) Jonathan Passerat-Palmbach,Pierre Schweitzer,Jonathan Caux,Pridi Siregar,Claude Mazelet al. International Journal of Computer Aided Engineering and Technology, 2015, 7 (2), pp.158-175 Article dans une revue hal-01099208v1
TaskLocalRandom: A Statistically Sound Substitute to Pseudorandom Number Generation in Parallel Java Tasks Frameworks Jonathan Passerat-Palmbach,Claude Mazel,David R.C. Hill Concurrency and Computation: Practice and Experience, 2014, 27, pp.3383-3398. ⟨10.1002/cpe.3214⟩ Article dans une revue hal-01098598v1
Distribution of Random Streams for Simulation Practitioners David R.C. Hill,Claude Mazel,Jonathan Passerat-Palmbach,Mamadou Kaba Traoré Concurrency and Computation: Practice and Experience, 2012, 25 (10), pp.1427 - 1442. ⟨10.1002/cpe.2942⟩ Article dans une revue hal-01099203v1
Pseudo-Random Streams for Distributed and Parallel Stochastic Simulations on GP-GPU Jonathan Passerat-Palmbach,Claude Mazel,David R.C. Hill Journal of Simulation, 2012, pp.141 - 151. ⟨10.1057/jos.2012.8⟩ Article dans une revue hal-01099194v1
Parallel stochastic simulations with rigorous distribution of pseudo-random numbers with DistMe: Application to life science simulations Romain Reuillon,Mamadou Kaba Traoré,Jonathan Passerat-Palmbach,David R.C. Hill Concurrency and Computation: Practice and Experience, 2012, 24 (7), pp.723 - 738. ⟨10.1002/cpe.1883⟩ Article dans une revue istex hal-01814168v1

Communication dans un congrès (14)

Privacy-preserving medical image analysis Alexander Ziller,Jonathan Passerat-Palmbach,Théo Ryffel,Dmitrii Usynin,Andrew Trasket al. MED-NEURIPS 2020 : Medical Imaging meets NeurIPS, Dec 2020, Online, France Communication dans un congrès hal-03065933v1
Retour d'expérience de l'école OpenMOLE &quot;ExModelo&quot;, organisée en partenariat avec le méso-centre du CRIANN Mathieu Leclaire,Sebastien Rey-Coyrehourcq,Béatrice Charton,Hélène Arduin,Paul Chapronet al. Journées Calcul et Données 2019, Oct 2019, Toulouse, France Communication dans un congrès halshs-02442620v1
Fostering the use of methods for geosimulation models sensitivity analysis and validation Romain Reuillon,Mathieu Leclaire,Juste Raimbault,Hélène Arduin,Paul Chapronet al. ECTQG 2019, Sep 2019, Mondorf, Luxembourg Communication dans un congrès halshs-02283730v1
Model Exploration Using OpenMOLE - a workflow engine for large scale distributed design of experiments and parameter tuning Romain Reuillon,Mathieu Leclaire,Jonathan Passerat-Palmbach IEEE High Performance Computing and Simulation conference 2015, Jun 2015, Amsterdam, Netherlands Communication dans un congrès hal-01163457v1
OpenMOLE: a Workflow Engine for Distributed Medical Image Analysis Jonathan Passerat-Palmbach,Mathieu Leclaire,Romain Reuillon,Zehan Wang,Daniel Rueckert International Workshop on High Performance Computing for Biomedical Image Analysis (part of MICCAI 2014), Sep 2014, Boston, United States Communication dans un congrès hal-01099220v1
Prototyping Parallel Simulations on Manycore Architectures Using Scala: A Case Study Jonathan Passerat-Palmbach,Romain Reuillon,Claude Mazel,David R.C. Hill IEEE High Performance Computing and Simulation (HPCS) 2013, Jul 2013, Helsinki, Finland. pp.405 - 412, ⟨10.1109/HPCSim.2013.6641447⟩ Communication dans un congrès hal-01098626v1
Parallel stepwise stochastic simulation: Harnessing GPUs to Explore Possible Futures States of a Chromosome Folding Model Thanks to the Possible Futures Algorithm (PFA) Jonathan Passerat-Palmbach,Jonathan Caux,Yannick Le Pennec,Romain Reuillon,Ivan Junieret al. SIGSIM-PADS’13 - ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS), May 2013, Montreal, Canada. pp.169 - 177, ⟨10.1145/2486092.2486114⟩ Communication dans un congrès hal-01098546v1
ThreadLocalMRG32k3a: A Statistically Sound Substitute to Pseudorandom Number Generation in Parallel Java Applications Jonathan Passerat-Palmbach,Claude Mazel,David R.C. Hill IEEE High Performance Computing and Simulation conference 2012, Jul 2012, Madrid, Spain. pp.543 - 550, ⟨10.1109/HPCSim.2012.6266971⟩ Communication dans un congrès hal-01098552v1
How to Correctly Deal With Pseudorandom Numbers in Manycore Environments - Application to GPU programming with Shoverand Jonathan Passerat-Palmbach,David R.C. Hill IEEE High Performance Computing and Simulation conference 2012, Jul 2012, Madrid, Spain. pp.25 - 31, ⟨10.1109/HPCSim.2012.6266887⟩ Communication dans un congrès hal-01098579v1
Automatic Parallelization of a Gap Model using Java and OpenCL Jonathan Passerat-Palmbach,Arthur Forest,Julien Pal,Bruno Corbara,David R.C. Hill European Simulation and Modelling Conference, Oct 2012, Essen, Belgium. pp.24-31 Communication dans un congrès hal-01083187v1
Pseudo-Random Number Generation on GP-GPU Jonathan Passerat-Palmbach,Claude Mazel,David R.C. Hill IEEE/ACM/SCS Workshop on Principles of Advanced and Distributed Simulation, Jun 2011, Nice, France. ⟨10.1109/PADS.2011.5936751⟩ Communication dans un congrès hal-01083185v1
Warp-Level Parallelism: Enabling Multiple Replications In Parallel on GPU Jonathan Passerat-Palmbach,Jonathan Caux,Pridi Siregar,Claude Mazel,David R.C. Hill European Simulation and Modelling, Oct 2011, Guimaraes, Portugal Communication dans un congrès hal-01083163v2
ShoveRand: a Model-Driven Framework to Easily Generate Random Numbers on GP-GPU Jonathan Passerat-Palmbach,Claude Mazel,Bruno Bachelet,David R.C. Hill IEEE/ACM International Conference on High Performance Computing and Simulation (HPCS), Jul 2011, Istanbul, Turkey. pp.41-48, ⟨10.1109/HPCSim.2011.5999805⟩ Communication dans un congrès hal-01083180v1
Reliable Initialization of GPU-enabled Parallel Stochastic Simulations Using Mersenne Twister for Graphics Processors Jonathan Passerat-Palmbach,Claude Mazel,Antoine Mahul,David R.C. Hill European Simulation and Modelling 2010, Oct 2010, Essen, Belgium. pp.187 - 195 Communication dans un congrès hal-01083150v2

Chapitre d'ouvrage (1)

OpenCL: A suitable solution to simplify and unify High Performance Computing developments Jonathan Passerat-Palmbach,David R.C. Hill Frederic Magoules. Patterns for Parallel Programming on GPUs, Saxe-Coburg Publications, pp.189-209, 2014, 978-1-874672-57-9 Chapitre d'ouvrage hal-01098581v1

Thèse (1)

Contributions to parallel stochastic simulation: Application of good software engineering practices to the distribution of pseudorandom streams in hybrid Monte-Carlo simulations Jonathan Passerat-Palmbach Distributed, Parallel, and Cluster Computing [cs.DC]. Université Blaise Pascal - Clermont-Ferrand II, 2013. English. ⟨NNT : ⟩ Thèse tel-00858735v3