Juan Cortés

Identifiants chercheurs

IdHAL :

juan-cortes

ORCID :

0000-0002-4660-0306

IdRef :

07673658X

ResearcherID :

http://www.researcherid.com/rid/F-7545-2019

Publications

Article dans une revue (76)

Programming the Optoelectronic Properties of Atomically Precise Gold Nanoclusters Using the Conformational Landscape of Intrinsically Disordered Proteins Santiago Rodriguez,Sylvain Kumanski,Zeineb Ayed,Aurélie Fournet,Charlène Bouanchaudet al. Chemistry - A European Journal, In press, pp.e02991. ⟨10.1002/chem.202502991⟩ Article dans une revue hal-05485102v1
Toward a unified framework for determining conformational ensembles of disordered proteins Hamidreza Ghafouri,Pavel Kadeřávek,Ana Melo,Maria Cristina Aspromonte,Pau Bernadóet al. Nature Methods, 2026, Online ahead of print. ⟨10.1038/s41592-026-03003-2⟩ Article dans une revue hal-05553030v1
The dependence of the amino acid backbone conformation on the translated synonymous codon is not statistically significant Javier González-Delgado,Pablo Mier,Pau Bernadó,Pierre Neuvial,Juan Cortés Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (24), ⟨10.1073/pnas.2503264122⟩ Article dans une revue hal-05113237v1
The ARMAGNHAC database: A Ratio-based Molecular Analyzer and Generator of Numerous Hydrogenated Amorphous Carbons Valentin Milia,Mathias Rapacioli,Christophe Zanon,Juan Cortés,Nathalie Tarrat Journal of Physical Chemistry A, 2025, 129 (45), pp.10358-10367. ⟨10.1021/acs.jpca.5c04941⟩ Article dans une revue hal-05340323v1
AFflecto: A web server to generate conformational ensembles of flexible proteins from AlphaFold models Mátyás Pajkos,Ilinka Clerc,Christophe Zanon,Pau Bernadó,Juan Cortés Journal of Molecular Biology, 2025, pp.169003. ⟨10.1016/j.jmb.2025.169003⟩ Article dans une revue hal-04959947v1
Structural comparison of homomolecular systems on surfaces using a fingerprint-based method William Margerit,Nathalie Tarrat,Juan Cortés,Cathy Maugis-Rabusseau The Journal of Chemical Physics, 2025, 162 (21), pp.214107. ⟨10.1063/5.0267668⟩ Article dans une revue hal-05095724v1
Sequence‐ and Docking‐Site‐Dependent Contributions to Multi‐Site Phosphorylation of an Intrinsically Disordered MAPK Substrate Thibault Orand,Elise Delaforge,Marion Chenal,Maud Tengo,Torsten Herrmannet al. Advanced Science, 2025, 12 (35), pp.e03987. ⟨10.1002/advs.202503987⟩ Article dans une revue hal-05224771v1
Dependence of lactose adsorption on the exposed crystal facets of metals: a comparative study of gold, silver and copper Nathalie Tarrat,J. Christian Schön,Juan Cortés Physical Chemistry Chemical Physics, 2024, 31, pp.21134-21146. ⟨10.1039/D4CP01559B⟩ Article dans une revue hal-04664324v1
Weighted families of contact maps to characterize conformational ensembles of (highly-)flexible proteins Javier González-Delgado,Pau Bernadó,Pierre Neuvial,Juan Cortés Bioinformatics, 2024, 40 (11), pp.btae627. ⟨10.1093/bioinformatics/btae627⟩ Article dans une revue hal-04749226v1
Exploring Molecular Energy Landscapes by Coupling the DFTB Potential with a Tree-Based Stochastic Algorithm: Investigation of the Conformational Diversity of Phthalates Valentin Milia,Nathalie Tarrat,Christophe Zanon,Juan Cortés,Mathias Rapacioli Journal of Chemical Information and Modeling, 2024, 64 (8), pp.3290-3301. ⟨10.1021/acs.jcim.3c01981⟩ Article dans une revue hal-04517230v1
Robust Motion Planning with Accuracy Optimization based on Learned Sensitivity Metrics Simon Wasiela,Marco Cognetti,Paolo Robuffo Giordano,Juan Cortés,Thierry Simeon IEEE Robotics and Automation Letters, 2024, 9 (11), pp.10113-10120. ⟨10.1109/LRA.2024.3468149⟩ Article dans une revue hal-04636547v1
Coordinated Multi-Robot Trajectory Tracking Control over Sampled Communication ⋆ Enrica Rossi,Marco Tognon,Luca Ballotta,Ruggero Carli,Juan Cortéset al. Automatica, 2023, 151, pp.110941. ⟨10.1016/j.automatica.2023.110941⟩ Article dans une revue hal-04010855v1
Multi-site-specific isotopic labeling accelerates high-resolution structural investigations of pathogenic huntingtin exon-1 Carlos Elena-Real,Annika Urbanek,Xamuel Lund,Anna Morató,Amin Sagaret al. Structure, 2023, 31 (6), pp.644-650.e5. ⟨10.1016/j.str.2023.04.003⟩ Article dans une revue hal-04085383v1
WASCO: A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins Javier González-Delgado,Amin Sagar,Christophe Zanon,Kresten Lindorff-Larsen,Pau Bernadóet al. Journal of Molecular Biology, 2023, 435 (14), pp.168053. ⟨10.1016/j.jmb.2023.168053⟩ Article dans une revue hal-04056662v1
The structure of pathogenic huntingtin exon 1 defines the bases of its aggregation propensity Carlos A Elena-Real,Amin Sagar,Annika Urbanek,Matija Popovic,Anna Moratóet al. Nature Structural and Molecular Biology, 2023, 30 (3), pp.309 - 320. ⟨10.1038/s41594-023-00920-0⟩ Article dans une revue hal-04052774v1
Two-sample goodness-of-fit tests on the flat torus based on Wasserstein distance and their relevance to structural biology Javier González-Delgado,Alberto González-Sanz,Juan Cortés,Pierre Neuvial Electronic Journal of Statistics , 2023, 17 (1), pp.1547-1586. ⟨10.1214/23-EJS2135⟩ Article dans une revue hal-03369795v3
IGLOO: An Iterative Global Exploration and Local Optimization Algorithm to Find Diverse Low-Energy Conformations of Flexible Molecules William Margerit,Antoine Charpentier,Cathy Maugis-Rabusseau,Johann Christian Schön,Nathalie Tarratet al. Algorithms, 2023, 16 (10), pp.476. ⟨10.3390/a16100476⟩ Article dans une revue hal-04247201v1
Low Complexity Induces Structure in Protein Regions Predicted as Intrinsically Disordered Mariane Gonçalves-Kulik,Pablo Mier,Kristina Kastano,Juan Cortés,Pau Bernadóet al. Biomolecules, 2022, 12 (8), pp.1098. ⟨10.3390/biom12081098⟩ Article dans une revue hal-03767342v1
Dehydrogenation versus deprotonation of disaccharide molecules in vacuum: a thorough theoretical investigation Bohdan Andriyevsky,Nathalie Tarrat,Juan Cortés,Johann Christian Schön Royal Society Open Science, 2022, 9 (10), ⟨10.1098/rsos.220436⟩ Article dans une revue hal-03817247v1
MoMA-LoopSampler: A web server to exhaustively sample protein loop conformations Amélie Barozet,Kevin Molloy,Marc Vaisset,Christophe Zanon,Pierre Fauretet al. Bioinformatics, 2022, 38 (2), pp.552-553. ⟨10.1093/bioinformatics/btab584⟩ Article dans une revue hal-03326493v1
Statistical proofs of the interdependence between nearest neighbor effects on polypeptide backbone conformations Javier González-Delgado,Pau Bernadó,Pierre Neuvial,Juan Cortés Journal of Structural Biology, 2022, 214 (4), pp.107907. ⟨10.1016/j.jsb.2022.107907⟩ Article dans une revue hal-03826233v1
The sequence context in poly-alanine regions: structure, function and conservation Pablo Mier,Carlos Elena-Real,Juan Cortés,Pau Bernadó,Miguel Andrade-Navarro Bioinformatics, 2022, 38 (21), pp.4851-4858. ⟨10.1093/bioinformatics/btac610⟩ Article dans une revue hal-03778766v1
Precise Cable-Suspended Pick-and-Place with an Aerial Multi-robot System A E Jiménez-Cano,Dario Sanalitro,M. Tognon,A. Franchi,J. Cortés Journal of Intelligent and Robotic Systems, 2022, 105 (3), pp.68. ⟨10.1007/s10846-022-01668-3⟩ Article dans une revue hal-03748086v1
Conformational buffering underlies functional selection in intrinsically disordered protein regions Nicolás González-Foutel,Juliana Glavina,Wade Borcherds,Matías Safranchik,Susana Barrera-Vilarmauet al. Nature Structural and Molecular Biology, 2022, 29 (8), pp.781-790. ⟨10.1038/s41594-022-00811-w⟩ Article dans une revue hal-03767337v1
Indirect Force Control of a Cable-suspended Aerial Multi-Robot Manipulator Dario Sanalitro,Marco Tognon,A Jimenez Cano,Juan Cortés,Antonio Franchi IEEE Robotics and Automation Letters, 2022, 7 (3), pp.6726 - 6733. ⟨10.1109/LRA.2022.3176457⟩ Article dans une revue hal-03664826v1
Interdomain linkers tailor the stability of immunoglobulin repeats in polyproteins Tanuja Joshi,Surbhi Garg,Alejandro Estaña,Juan Cortés,Pau Bernadóet al. Biochemical and Biophysical Research Communications, 2021, 550, pp.43-48. ⟨10.1016/j.bbrc.2021.02.114⟩ Article dans une revue hal-03161535v1
Molecular flexibility in computational protein design: an algorithmic perspective Younes Bouchiba,Juan Cortés,Thomas Schiex,Sophie Barbe Protein Engineering, Design and Selection, 2021, 34, pp.gzab011. ⟨10.1093/protein/gzab011⟩ Article dans une revue hal-03221838v1
Current approaches to flexible loop modeling Amélie Barozet,Pablo Chacón,Juan Cortés Current Research in Structural Biology, 2021, 3, pp.187-191. ⟨10.1016/j.crstbi.2021.07.002⟩ Article dans une revue hal-03318652v1
A tripartite carbohydrate-binding module to functionalize cellulose nanocrystal Angeline Pelus,Gaëlle Bordes,Sophie Barbe,Younes Bouchiba,Callum Burnardet al. Biomaterials Science, 2021, 9 (22), pp.7444-7455. ⟨10.1039/d1bm01156a⟩ Article dans une revue hal-03372120v1
Protein loops with multiple meta-stable conformations: a challenge for sampling and scoring methods Amélie Barozet,Marc Bianciotto,Marc Vaisset,Thierry Simeon,Hervé Minouxet al. Proteins - Structure, Function and Bioinformatics, 2021, 89 (2), pp.218-231. ⟨10.1002/prot.26008⟩ Article dans une revue hal-02947409v1
The diversity of molecular interactions involving intrinsically disordered proteins: A molecular modeling perspective Ilinka Clerc,Amin Sagar,Alessandro Barducci,Nathalie Sibille,Pau Bernadóet al. Computational and Structural Biotechnology Journal, 2021, 19, pp.3817-3828. ⟨10.1016/j.csbj.2021.06.031⟩ Article dans une revue hal-03281983v1
Cooperative Aerial Load Transportation via Sampled Communication Enrica Rossi,Marco Tognon,Ruggero Carli,Luca Schenato,Juan Cortéset al. IEEE Control Systems Letters, 2020, 4 (2), pp.277-282. ⟨10.1109/LCSYS.2019.2924413⟩ Article dans une revue hal-02170909v1
Full-pose Manipulation Control of a Cable-suspended load with Multiple UAVs under Uncertainties Dario Sanalitro,Heitor J Savino,Marco Tognon,Juan Cortés,Antonio Franchi IEEE Robotics and Automation Letters, 2020, 5 (2), pp.2185 - 2191. ⟨10.1109/LRA.2020.2969930⟩ Article dans une revue hal-02460422v1
Flanking regions determine the structure of the poly-glutamine homo- repeat in huntingtin through mechanisms common among glutamine-rich human proteins Annika N Urbanek,Matija Popovic,Anna Morató,Alejandro N Estaña,Carlos A Elena-Realet al. Structure, 2020, 28 (7), pp.733-746.e5. ⟨10.1016/j.str.2020.04.008⟩ Article dans une revue hal-02893075v1
A Reinforcement-Learning-Based Approach to Enhance Exhaustive Protein Loop Sampling Amélie Barozet,Kevin Molloy,Marc Vaisset,Thierry Simeon,Juan Cortés Bioinformatics, 2020, 36 (4), pp.1099-1106. ⟨10.1093/bioinformatics/btz684⟩ Article dans une revue hal-02289207v1
Aide à la conception Juan Cortés,Thomas Schiex Le petit illustré, regards croisés de chercheur.es, 2020 Article dans une revue hal-03436420v1
Evidence of the reduced abundance of proline cis conformation in protein poly-proline tracts Annika N Urbanek,Matija Popovic,Carlos A Elena-Real,Anna Morató,Alejandro N Estañaet al. Journal of the American Chemical Society, 2020, 142 (17), pp.7976-7986. ⟨10.1021/jacs.0c02263⟩ Article dans une revue hal-02545935v1
Predicting secondary structure propensities in IDPs using simple statistics from three-residue fragments Alejandro N Estaña,Amélie Barozet,Assia Mouhand,Marc Vaisset,Christophe Zanonet al. Journal of Molecular Biology, 2020, 342 (19), pp.5447-5459. ⟨10.1016/j.jmb.2020.07.026⟩ Article dans une revue hal-02920302v1
Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems Antoine Charpentier,David Mignon,Sophie Barbe,Juan Cortés,Thomas Schiexet al. Journal of Chemical Information and Modeling, 2019, 59 (1), pp.127-136. ⟨10.1021/acs.jcim.8b00510⟩ Article dans une revue hal-01943616v1
A Truly Redundant Aerial Manipulator System with Application to Push-and-Slide Inspection in Industrial Plants Marco Tognon,Hermes A Tello Chávez,Enrico Gasparin,Quentin Sablé,Davide Bicegoet al. IEEE Robotics and Automation Letters, 2019, 4 (2), pp.1846 - 1851. ⟨10.1109/LRA.2019.2895880⟩ Article dans une revue hal-01910343v2
Investigating the Formation of Structural Elements in Proteins Using Local Sequence-Dependent Information and a Heuristic Search Algorithm Alejandro N Estaña,Malik Ghallab,Pau Bernadó,Juan Cortés Molecules, 2019, 24 (6), pp.1150. ⟨10.3390/molecules24061150⟩ Article dans une revue hal-02080026v1
Simultaneous System Design and Path Planning: A Sampling-based Algorithm. Kevin Molloy,Laurent Denarie,Marc Vaisset,Thierry Simeon,Juan Cortés The International Journal of Robotics Research, 2019, 38 (2-3), pp.375-387. ⟨10.1177/0278364918783054⟩ Article dans une revue hal-01834414v1
Carbohydrate Self-Assembly at Surfaces: STM Imaging of Sucrose Conformation and Ordering on Cu(100) Sabine Abb,Nathalie Tarrat,Juan Cortés,Bohdan Andriyevsky,Ludger Harnauet al. Angewandte Chemie International Edition, 2019, 58 (25), pp.8336-8340. ⟨10.1002/anie.201901340⟩ Article dans une revue hal-02146428v1
Realistic Ensemble Models of Intrinsically Disordered Proteins Using a Structure-Encoding Coil Database Alejandro N Estaña,Nathalie Sibille,Elise Delaforge,Marc Vaisset,Juan Cortéset al. Structure, 2019, 27 (5), pp.381-391.e2. ⟨10.1016/j.str.2018.10.016⟩ Article dans une revue hal-01954977v1
Polymorphism in carbohydrate self-assembly at surfaces: STM imaging and theoretical modelling of trehalose on Cu(100) Sabine Abb,Nathalie Tarrat,Juan Cortés,Bohdan Andriyevsky,Ludger Harnauet al. RSC Advances, 2019, 9 (61), pp.35813-35819. ⟨10.1039/C9RA06764G⟩ Article dans une revue hal-02370437v1
Conformational changes in antibody Fab fragments upon binding and their consequences on the performance of docking algorithms Amélie Barozet,Marc Bianciotto,Thierry Simeon,Hervé Minoux,Juan Cortés Immunology Letters, 2018, 200, pp.5-15. ⟨10.1016/j.imlet.2018.06.002⟩ Article dans une revue hal-01823695v1
Control-Aware Motion Planning for Task-Constrained Aerial Manipulation Marco Tognon,Elisabetta Cataldi,Hermes Amadeus A Tello Chavez,Gianluca Antonelli,Juan Cortéset al. IEEE Robotics and Automation Letters, 2018, 3 (3), pp.2478-2484. ⟨10.1109/LRA.2018.2803206⟩ Article dans une revue hal-01704127v1
Prediction and clarification of structures of (bio)molecules on surfaces-a review C. Schön,,C. Oligschleger,Juan Cortés Zeitschrift fur Naturforschung B, 2018, 71 (5), ⟨10.1515/znb-2015-0222⟩ Article dans une revue hal-01295377v1
Exhaustive exploration of the conformational landscape of small cyclic peptides using a robotics approach Maud Jusot,Dirk Stratmann,Marc Vaisset,Jacques Chomilier,Juan Cortés Journal of Chemical Information and Modeling, 2018, 58 (11), pp.2355-2368. ⟨10.1021/acs.jcim.8b00375⟩ Article dans une revue hal-01893751v1
Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules Alejandro N Estaña,Kevin Molloy,Marc Vaisset,Nathalie Sibille,Thierry Simeonet al. Parallel Computing, 2018, 77, pp.84-100. ⟨10.1016/j.parco.2018.06.005⟩ Article dans une revue hal-01823694v2
The AEROARMS Project: Aerial Robots with Advanced Manipulation Capabilities for Inspection and Maintenance Anibal Ollero,Guillermo Heredia,Antonio Franchi,Gianluca Antonelli,Konstantin Kondaket al. IEEE Robotics and Automation Magazine, 2018, 25 (4), pp.12-23. ⟨10.1109/MRA.2018.2852789⟩ Article dans une revue hal-01870107v1
Segmenting Proteins into Tripeptides to Enhance Conformational Sampling with Monte Carlo Methods Laurent Denarie,Ibrahim Al Bluwi,Marc Vaisset,Thierry Simeon,Juan Cortés Molecules, 2018, 23 (2), pp.373. ⟨10.3390/molecules23020373⟩ Article dans une revue hal-01708710v1
Small-angle scattering studies of intrinsically disordered proteins and their complexes Tiago N Cordeiro,Fatima Herranz-Trillo,Annika N Urbanek,Alejandro N Estaña,Juan Cortéset al. Current Opinion in Structural Biology, 2017, 42, pp.15 - 23. ⟨10.1016/j.sbi.2016.10.011⟩ Article dans une revue hal-01391541v1
Structural Characterization of Highly Flexible Proteins by Small-Angle Scattering. Tiago N Cordeiro,Fatima Herranz-Trillo,Annika N Urbanek,Alejandro N Estaña,Juan Cortéset al. Advances in Experimental Medicine and Biology, 2017, pp.PP.107-129. ⟨10.1007/978-981-10-6038-0_7⟩ Article dans une revue hal-01664316v1
Foreword on special issue on robotics methods for structural and dynamic modeling of molecular systems Lydia Tapia,Juan Cortés,Amarda Shehu,Jinalin Chen Robotica, 2016, 34 (08), pp.1677-1678. ⟨10.1017/S0263574716000370⟩ Article dans une revue hal-01942773v1
Optimal Path Planning in Complex Cost Spaces With Sampling-Based Algorithms Didier Devaurs,Thierry Simeon,Juan Cortés IEEE Transactions on Automation Science and Engineering, 2016, 13 (2), pp.415-424. ⟨10.1109/TASE.2015.2487881⟩ Article dans une revue hal-01231482v1
Characterizing Energy Landscapes of Peptides using a Combination of Stochastic Algorithms Didier Devaurs,Kevin Molloy,Marc Vaisset,Amarda Shehu,Thierry Simeonet al. IEEE Transactions on NanoBioscience, 2015, 14 (5), pp. 545-552 Article dans une revue hal-01143833v1
MoMA-LigPath: A web server to simulate protein-ligand unbinding Didier Devaurs,Léa Bouard,Marc Vaisset,Christophe Zanon,Ibrahim Al Bluwiet al. Nucleic Acids Research, 2013, vol. 41, pp. 297-302. ⟨10.1093/nar/gkt380⟩ Article dans une revue hal-00843321v1
Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods Ibrahim Al Bluwi,Marc Vaisset,Thierry Simeon,Juan Cortés BMC Structural Biology, 2013, 13 (Suppl 1), pp.S2. ⟨10.1186/1472-6807-13-S1-S2⟩ Article dans une revue hal-01980925v1
Parallelizing RRT on large-scale distributed-memory architectures Didier Devaurs,Thierry Simeon,Juan Cortés IEEE Transactions on Robotics, 2013, 29 (2), pp. 571-579. ⟨10.1109/TRO.2013.2239571⟩ Article dans une revue hal-00861579v1
Thumb-loops up for catalysis: a structure/function investigation of a functional loop movement in a GH11 xylanase Gabriel Paës,Juan Cortés,Thierry Simeon,Michael O'Donohue,Vinh Tran Computational and Structural Biotechnology Journal, 2012, 1 (2), pp.e201207001. ⟨10.5936/csbj.201207001⟩ Article dans une revue hal-01267831v1
Motion planning algorithms for molecular simulations: A survey Ibrahim Al Bluwi,Thierry Simeon,Juan Cortés Computer Science Review, 2012, 6 (4), pp.125-143 Article dans une revue hal-01982596v1
Rigid-CLL: Avoiding constant-distance computations in cell linked-lists algorithms V Ruiz de Angulo,Juan Cortés,J. M Porta Journal of Computational Chemistry, 2012, 33 (3), pp.294-300. ⟨10.1002/jcc.21974⟩ Article dans une revue hal-02573424v1
Enhancing systematic protein-protein docking methods using ray casting: Application to ATTRACT Yi Li,Juan Cortés,Thierry Simeon Proteins - Structure, Function and Bioinformatics, 2011, 79 (11), pp.3037-3049. ⟨10.1002/prot.23127⟩ Article dans une revue hal-01982609v1
Encoding Molecular Motions in Voxel Maps Juan Cortés,Sophie Barbe,Monique Erard,Thierry Simeon IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8 (2), pp.557-563. ⟨10.1109/TCBB.2010.23⟩ Article dans une revue hal-02652128v2
A mixed molecular modeling-robotics approach to investigate lipase large molecular motions Sophie Barbe,Juan Cortés,Thierry Simeon,Pierre Monsan,Magali Siméonet al. Proteins - Structure, Function and Bioinformatics, 2011, 79 (8), pp.2517-2529. ⟨10.1002/prot.23075⟩ Article dans une revue hal-02651861v2
A randomized tree construction algorithm to explore energy landscapes Léonard Jaillet,Francesc J Corcho,Juan J Pérez,Juan Cortés Journal of Computational Chemistry, 2011, 32 (16), pp.3464 - 3474. ⟨10.1002/jcc.21931⟩ Article dans une revue hal-01894030v1
Simulating ligand-induced conformational changes in proteins using a mechanical disassembly method Juan Cortés,Duc Thanh Le,Romain Iehl,Thierry Simeon Physical Chemistry Chemical Physics, 2010, 12 (29), pp.8268 Article dans une revue hal-01986237v1
Sampling-Based Path Planning on Configuration-Space Costmaps Léonard Jaillet,Juan Cortés,Thierry Simeon IEEE Transactions on Robotics, 2010, 26 (4), pp.635-646 Article dans une revue hal-01986202v1
Control of Lipase Enantioselectivity by Engineering the Substrate Binding Site and Access Channel Vincent Lafaquière,Sophie Barbe,Sophie Puech-Guenot,David Guieysse,Juan Cortéset al. ChemBioChem, 2009, 10 (17), pp.2760-2771. ⟨10.1002/cbic.200900439⟩ Article dans une revue hal-01986285v1
An NMA-guided path planning approach for computing large-amplitude conformational changes in proteins Svetlana Kirillova,Juan Cortés,Alin Stefaniu,Thierry Simeon Proteins - Structure, Function and Bioinformatics, 2008, 70 (1), pp.131-143. ⟨10.1002/prot.21570⟩ Article dans une revue hal-01987938v1
Disassembly Path Planning for Complex Articulated Objects Juan Cortés,Léonard Jaillet,Thierry Simeon IEEE Transactions on Robotics, 2008, 24 (2), pp.475-481 Article dans une revue hal-01987955v1
A Structure-Controlled Investigation of Lipase Enantioselectivity by a Path-Planning Approach David Guieysse,Juan Cortés,Sophie Puech-Guenot,Sophie Barbe,Vincent Lafaquièreet al. ChemBioChem, 2008, 9 (8), pp.1308-1317. ⟨10.1002/cbic.200700548⟩ Article dans une revue istex hal-01986375v1
A path planning approach for computing large-amplitude motions of flexible molecules Juan Cortés,Thierry Simeon,Vicente Ruiz de Angulo,David Guieysse,Magali Remaud Simeonet al. Bioinformatics, 2005, 21 (Suppl 1), pp.i116-i125. ⟨10.1093/bioinformatics/bti1017⟩ Article dans une revue hal-01988625v1
Manipulation Planning with Probabilistic Roadmaps Thierry Simeon,Jean-Paul Laumond,Juan Cortés,Anis Sahbani The International Journal of Robotics Research, 2004, 23 (7-8), pp.729-746 Article dans une revue hal-01987879v1
Geometric algorithms for the conformational analysis of long protein loops Juan Cortés,Thierry Simeon,Magali Remaud Simeon,V. Tran Journal of Computational Chemistry, 2004, 25 (7), pp.956-967. ⟨10.1002/jcc.20021⟩ Article dans une revue hal-01987902v1

Pré-publication, Document de travail (5)

Interplay Between Intrinsically Disordered Proteins and Atomically Precise Gold Nanoclusters Modulates their Optical Properties Santiago Rodriguez,Sylvain Kumanski,Zeineb Ayed,Aurélie Fournet,Charlène Bouanchaudet al. 2025 Pré-publication, Document de travail hal-05268234v1
Afflecto: A Web Server to Generate Conformational Ensembles of Flexible Proteins from Alphafold Models Matyas Pajkos,Ilinka Clerc,Christophe Zanon,Pau Bernado,Juan Cortés 2025 Pré-publication, Document de travail hal-04865745v1
Note on learning sensitivity metrics for a quadrotor Simon Wasiela,Smail Ait Bouhsain,Marco Cognetti,Juan Cortés,Thierry Simeon 2024 Pré-publication, Document de travail hal-04642304v1
Post-clustering Inference under Dependence Javier González-Delgado,Mathis Deronzier,Juan Cortés,Pierre Neuvial 2025 Pré-publication, Document de travail hal-04250364v2
Learned Sensitivity Metrics for Robust and Accurate Motion Planning Simon Wasiela,Marco Cognetti,Paolo Robuffo Giordano,Juan Cortés,Thierry Simeon 2023 Pré-publication, Document de travail hal-04027078v1

Poster de conférence (1)

AI-powered de novo design of miniprotein binders Younes Bouchiba,Juan Cortés,Thomas Schiex,Sophie Barbe Biosynsys, Jun 2024, Montpellier, France. 2024 Poster de conférence hal-04787355v1

Chapitre d'ouvrage (7)

High-resolution Imaging of Glycans by Scanning Tunnelling Microscopy Enabled by Electrospray Ion Beam Deposition (ESIBD) Stephan Rauschenbach,Marko Grabarics,Martina Delbianco,Juan Cortés,Christian Schönet al. Weston B Struwe. Glycoprotein Analysis, Royal Society of Chemistry, Chapitre 13 (pp.329-354), 2024, New Developments in Mass Spectrometry, 978-1839163944. ⟨10.1039/9781839166433-00329⟩ Chapitre d'ouvrage hal-04928742v1
Sampling-Based Tree Planners (RRT, EST, and Variations) Juan Cortés,Thierry Simeon Encyclopedia of Robotics, Springer Berlin Heidelberg, pp.1-9, 2021, ⟨10.1007/978-3-642-41610-1_170-1⟩ Chapitre d'ouvrage hal-03165054v1
Combining System Design and Path Planning Laurent Denarie,Kevin Molloy,Marc Vaisset,Thierry Simeon,Juan Cortés Goldberg K., Abbeel P., Bekris K., Miller L. Algorithmic Foundations of Robotics XII, 13, , pp.112-127, 2020, Springer Proceedings in Advanced Robotics, ⟨10.1007/978-3-030-43089-4_8⟩ Chapitre d'ouvrage hal-02571707v1
Motion Planning Alexandre Boeuf,Juan Cortés,Thierry Simeon Aerial Robotic Manipulation, pp.317-332, 2019, 978-3-030-12945-3. ⟨10.1007/978-3-030-12945-3_23⟩ Chapitre d'ouvrage hal-02191300v1
Combining Assembly Planning and Geometric Task Planning Raphaël Lallement,Juan Cortés,Mamoun Gharbi,Alexandre Boeuf,Rachid Alamiet al. Anibal Ollero; Bruno Siciliano. Aerial Robotic Manipulation. Research, Development and Applications, 129, Springer, pp.299-316, 2019, Springer Tracts in Advanced Robotics, 978-3-030-12945-3. ⟨10.1007/978-3-030-12945-3_22⟩ Chapitre d'ouvrage hal-02191294v1
Sampling-Based Motion Planning under Kinematic Loop-Closure Constraints Juan Cortés,Thierry Simeon Algorithmic Foundations of Robotics VI, pp.75-90, 2005 Chapitre d'ouvrage hal-01987883v1
A General Manipulation Task Planner Thierry Simeon,Juan Cortés,Anis Sahbani,Jean-Paul Laumond Algorithmic Foundations of Robotics V. Springer Tracts in Advanced Robotics., pp.311-327, 2004 Chapitre d'ouvrage hal-01988619v1

Communication dans un congrès (40)

Learned Uncertainty Tubes via Recurrent Neural Networks for Planning Robust Robot Motions Simon Wasiela,Smail Ait Bouhsain,Marco Cognetti,Juan Cortés,Thierry Simeon 27th European Conference on Artificial Intelligence (ECAI), Oct 2024, Santiago de Compostela, Spain Communication dans un congrès hal-04636454v1
AI-powered de novo design of miniprotein binders Younes Bouchiba,Juan Cortés,Thomas Schiex,Sophie Barbe Biosynsys 2024, Jun 2024, Montpellier, France Communication dans un congrès hal-04787310v1
A Sensitivity-Aware Motion Planner (SAMP) to Generate Intrinsically-Robust Trajectories Simon Wasiela,Paolo Robuffo Giordano,Juan Cortés,Thierry Simeon IEEE International Conference on Robotics and Automation (ICRA), 2023, London, United Kingdom Communication dans un congrès hal-03808933v2
Computational Design of miniprotein binders Younes Bouchiba,Manon Ruffini,Juan Cortés,Thomas Schiex,Sophie Barbe Journées Scientifiques du GDR ChemBio, Jun 2022, Toulouse, France Communication dans un congrès hal-04223586v1
Computational Design of miniprotein binders Younes Bouchiba,Manon Ruffini,Juan Cortés,Thomas Schiex,Sophie Barbe GGMM 2021, Sep 2021, Villeneuve d’Ascq, France Communication dans un congrès hal-04223596v1
A case study of automated dual-arm manipulation in industrial applications Yoann Solana,Hector Herrero Cueva,Alvaro Rubio Garcia,Sergio Martinez Calvo,Urko Esnaola Camposet al. 24th IEEE International Conference on Emerging Technologies and Factory Automation (ETFA 2019), Sep 2019, Zaragoza, Spain. pp.563-570, ⟨10.1109/ETFA.2019.8869209⟩ Communication dans un congrès hal-02327826v1
Multi-Robot Path Planning with Maintenance of Generalized Connectivity Yoann Solana,Michele Furci,Juan Cortés,Antonio Franchi 2017 IEEE 1st International Symposium on Multi-Robot and Multi-Agent Systems, Dec 2017, Los Angeles, United States Communication dans un congrès hal-01658557v1
Combining System Design and Path Planning Laurent Denarie,Kevin Molloy,Marc Vaisset,Thierry Simeon,Juan Cortés Workshop on the Algorithmic Foundations of Robotics (WAFR), Dec 2016, San Francisco, United States Communication dans un congrès hal-01364042v1
Enhancing sampling-based kinodynamic motion planning for quadrotors Alexandre Boeuf,Juan Cortés,Rachid Alami,Thierry Simeon IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2015, Hamburg, Germany Communication dans un congrès hal-01231717v1
A Reinforcement Learning Approach to Protein Loop Modeling Kevin Molloy,Nicolas Buhours,Marc Vaisset,Thierry Simeon,Étienne Ferréet al. IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2015, Hamburg, Germany Communication dans un congrès hal-01206128v1
Planning agile motions for quadrotors in constrained environments Alexandre Boeuf,Juan Cortés,Rachid Alami,Thierry Simeon IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2014, Chicago, United States. 6p., ⟨10.1109/IROS.2014.6942564⟩ Communication dans un congrès hal-01187138v1
Sampling-based methods for a full characterization of energy landscapes of small peptides Didier Devaurs,Amarda Shehu,Thierry Simeon,Juan Cortés IEEE International Conference on Bioinformatics and Biomedicine, Nov 2014, Belfast, United Kingdom. 8 p Communication dans un congrès hal-01070405v1
Efficient sampling-based approaches to optimal path planning in complex cost spaces Didier Devaurs,Thierry Simeon,Juan Cortés International Workshop on the Algorithmic Foundations of Robotics (WAFR), Aug 2014, Istanbul, Turkey. pp.16 Communication dans un congrès hal-01062970v1
A multi-tree extension of the Transition-based RRT: Application to ordering-and-pathfinding problems in continuous cost spaces Didier Devaurs,Thierry Simeon,Juan Cortés IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), Sep 2014, Chicago, United States. 6 p Communication dans un congrès hal-01057030v1
A multi-tree approach to compute transition paths on energy landscapes Didier Devaurs,Marc Vaisset,Thierry Simeon,Juan Cortés Workshop on Artificial Intelligence and Robotics Methods in Computational Biology, AAAI '13, Jul 2013, Bellevue, United States. pp. 8-13 Communication dans un congrès hal-00872247v1
Enhancing the Transition-based RRT to deal with complex cost spaces Didier Devaurs,Thierry Simeon,Juan Cortés Proc. IEEE ICRA '13, May 2013, Karlsruhe, Germany. pp. 4105-4110 Communication dans un congrès hal-00872224v1
Motion planning for 6-D manipulation with aerial towed-cable systems Montserrat Manubens,Didier Devaurs,Lluis Ros,Juan Cortés Robotics: Science and Systems (RSS), Jun 2013, Berlin, Germany. 8p Communication dans un congrès hal-00872234v1
A motion planning approach to 6-D manipulation with aerial towed-cable systems Montserrat Manubens,Didier Devaurs,Lluis Ros,Juan Cortés International Micro Air Vehicle Conference and Flight Competition (IMAV '13), Sep 2013, Toulouse, France. 8p Communication dans un congrès hal-00872262v1
Costmap planning in high dimensional configuration spaces Romain Iehl,Juan Cortés,Thierry Simeon IEEE/ASME International Conference on Advanced Intelligent Mechatronics (AIM), Jul 2012, Kachsiung, Taiwan Communication dans un congrès hal-01982586v1
Coarse-grained elastic networks, normal mode analysis and robotics-inspired methods for modeling protein conformational transitions Ibrahim Al Bluwi,Marc Vaisset,Thierry Simeon,Juan Cortés IEEE International Conference on Bioinformatics and Biomedicine Workshops, Oct 2012, Philadelphia, United States. pp.40-47, ⟨10.1109/BIBMW.2012.6470359⟩ Communication dans un congrès hal-01981799v1
Planning human-aware motions using a sampling-based costmap planner Jim Mainprice,Emrah Akin Sisbot,Léonard Jaillet,Juan Cortés,Rachid Alamiet al. IEEE International Conference on Robotics and Automation (ICRA 2011), May 2011, Shanghai, China. ⟨10.1109/ICRA.2011.5980048⟩ Communication dans un congrès hal-01976227v1
Parallelizing RRT on distributed-memory architectures Didier Devaurs,Thierry Simeon,Juan Cortés Proc. IEEE ICRA '11, May 2011, Shanghai, China. pp. 2261-2266 Communication dans un congrès hal-00872218v1
Finding enveloping grasps by matching continuous surfaces Yi Li,Jean-Philippe Saut,Juan Cortés,Thierry Simeon,Daniel Sidobre IEEE International Conference on Robotics and Automation, 2011, Shangai, China Communication dans un congrès hal-01985779v1
Thumb-loops up for catalysis: a structure/function investigation of a functional loop movement in a GH-11 xylanase Gabriel Paës,Juan Cortés,Thierry Simeon,Michael O'Donohue,Vinh Tran Biomass-derived Pentoses : from Biotechnology to Fine Chemistry 2010, Nov 2010, Reims, France Communication dans un congrès hal-02822653v1
Planning pick-and-place tasks with two-hand regrasping Jean-Philippe Saut,Mokhtar Gharbi,Juan Cortés,Daniel Sidobre,Thierry Simeon IEEE/RSJ International Conference on Intelligent Robots and Systems, 2010, Taipei, Taiwan Communication dans un congrès hal-01986173v1
Coupling robotics and molecular modelling techniques to understand putative functional motion of the thumb-loop in GH-11 xylanase from Thermobacillus xylanilyticus Gabriel Paës,Juan Cortés,Thierry Simeon,Michael O'Donohue,Vinh Tran Lignobiotech One - 2010: 1. Symposium on Biotechnology Applied to Lignocelluloses (Lignobiotech One), Institut National de Recherche Agronomique (INRA). UMR Fractionnement des AgroRessources et Environnement (0614)., Mar 2010, Reims, France Communication dans un congrès hal-02815698v1
A path planning approach to (dis)assembly sequencing Duc Thanh Le,Juan Cortés,Thierry Simeon 2009 IEEE International Conference on Automation Science and Engineering (CASE 2009), Aug 2009, Bangalore, India. pp.286-291 Communication dans un congrès hal-01986320v1
Roadmap composition for multi-arm systems path planning Mokhtar Gharbi,Juan Cortés,Thierry Simeon 2009 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2009), Oct 2009, St. Louis, United States. pp.2471-2476 Communication dans un congrès hal-01986305v1
Encoding molecular motions in voxels maps Juan Cortés,Sophie Barbe,Monique Erard,Thierry Siméon IEEE International Conference on Robotics and Automation (ICRA), May 2009, Kobe, Japan. ⟨10.1109/ROBOT.2009.5152248⟩ Communication dans un congrès hal-04296471v1
A sampling-based path planner for dual-arm manipulation Mokthar Gharbi,Juan Cortés,Thierry Simeon 2008 IEEE/ASME International Conference on Advanced Intelligent Mechatronics (AIM), Jul 2008, Xian, China. pp.383-388 Communication dans un congrès hal-01986353v1
Transition-based RRT for path planning in continuous cost spaces Léonard Jaillet,Juan Cortés,Thierry Simeon 2008 IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2008, Nice, France. pp.2145-2150 Communication dans un congrès hal-01986342v1
Disassembly path planning for objects with articulated parts. Juan Cortés,Thierry Simeon IFAC Workshop on Intelligent Assembly and Disassembly, 2007, Alicante, Spain Communication dans un congrès hal-01989229v1
Molecular Disassembly With Rrt-Like Algorithms Juan Cortés,Léonard Jaillet,Thierry Simeon 2007 IEEE International Conference on Robotics and Automation (ICRA'07), Apr 2007, Rome, Italy. pp.3301-3306 Communication dans un congrès hal-01987923v1
Disassembly path planning for complex articulated objects Juan Cortés,Thierry Simeon IFAC Workshop on Intelligent Assembly and Disassembly, May 2007, Alicante, Spain Communication dans un congrès hal-01993265v1
BioCD : An efficient algorithm for self-collision and distance computation between highly articulated molecular models Vicente Ruiz de Angulo,Juan Cortés,Thierry Simeon Robotics : Science and Systems, Jun 2005, Cambridge, United States Communication dans un congrès hal-01988238v1
Probabilistic Motion Planning for Parallel Mechanisms Juan Cortés,Thierry Simeon IEEE International Conference on Robotics and Automation (ICRA'2003), Sep 2003, Taipei, Taiwan. pp.4354-4359 Communication dans un congrès hal-01052999v1
A Random Loop Generator for Planning the Motions of Closed Kinematic Chains using PRM Methods Juan Cortés,Thierry Simeon,Jean-Paul Laumond 2002 IEEE International Conference on Robotics and Automation (ICRA 2002), May 2002, Washington, United States. pp.2141-2146 Communication dans un congrès hal-01988698v1
A probabilistic algorithm for manipulation planning under continuous grasps and placements Anis Sahbani,Juan Cortés,Thierry Simeon IROS 2002: IEEE/RSJ International Conference on Intelligent Robots and Systems, 2002, Lausanne, Switzerland. pp.1560-1565 Communication dans un congrès hal-01988686v1
A manipulation planner for pick and place operations under continuous grasps and placements Thierry Simeon,Juan Cortés,Anis Sahbani,Jean-Paul Laumond 2002 IEEE International Conference on Robotics and Automation (ICRA 2002), May 2002, Washington, United States. pp.2022-2027 Communication dans un congrès hal-01988694v1
Computer Aided Motion: Move3D within MOLOG Thierry Simeon,Jean-Paul Laumond,Carl van Geem,Juan Cortés IEEE International Conference on Robotics and Automation (ICRA 2001), May 2001, Seoul, South Korea. pp.1494-1499 Communication dans un congrès hal-01993293v1

Logiciel (3)

WARIO: Weighted families of contact maps to characterize conformational ensembles of (highly-) flexible proteins Javier González-Delgado,Christophe Zanon,Juan Cortés 2024 Logiciel hal-04753382v1
WASCO: A Wasserstein-based statistical tool to compare conformational ensembles of intrinsically disordered proteins Javier González-Delgado,Christophe Zanon,Juan Cortés 2023 Logiciel hal-04703769v1
LS2P: Local Structural Propensity Predictor Juan Cortés,Alejandro Estaña,Christophe Zanon 2020, ⟨swh:1:dir:9c6afcb559711df1cc4407d7fbfd5405cb23762a;origin=https://hal.archives-ouvertes.fr/hal-04703680;visit=swh:1:snp:b7ab5ca270a92ca3e09d683b223abc6d63999835;anchor=swh:1:rel:c5e8314c07ab053e6452187b6df8ced75880c27a;path=/⟩ Logiciel hal-04703680v1

Vidéo (1)

Robust Motion Planning and Accuracy Optimization based on Learned Sensitivity Metric (Video) Simon Wasiela,Marco Cognetti,Paolo Robuffo Giordano,Juan Cortés,Thierry Simeon 2024 Vidéo hal-04642257v1

HDR (1)

Algorithmics of motion: From robotics, through structural biology, toward atomic-scale CAD Juan Cortés Robotics [cs.RO]. Universite Toulouse III Paul Sabatier, 2014 HDR tel-01110545v1

Thèse (1)

Motion planning algorithms for general closed-chain mechanisms Juan Cortés Automatique / Robotique. Institut National Polytechnique de Toulouse - INPT, 2003. Français. ⟨NNT : 2003INPT046H⟩ Thèse tel-00011002v2