Julie Ferreira de Carvalho

Identifiants chercheurs

IdHAL :

julie-ferreira-de-carvalho

ORCID :

0000-0001-6200-3344

IdRef :

16778384X

Présentation

INRAE Researcher

Currently @UMR IRHS : Research Institute in Horticulture and Seeds

Research interests

Studying the bases of phenotypic diversity and how plants cope with challenging and fluctuating environments is essential to improve resilience and sustainability of biological systems. Using complex polyploid plant models I investigate the functional and structural consequences of hybridisation and genome doubling on plant genomes in an evolutionary and ecological framework. As all Angiosperms have experienced at least one round of genome doubling and as most important crops have multiple sets of chromosomes, it is paramount to dive into their genomes in the light of this complex and redundant ecosystem. I have been interested in determining the molecular (genetic, epigenetic) bases of polyploid plant phenotypes and adaptation to various environmental cues (both abiotic and biotic). I utilize multidisciplinary approaches combining quantitative genetics, evolutionary biology, ecology, experimental and molecular biology, and bioinformatics to inform the genetic and epigenetic bases of polyploid speciation and tackle important questions in plant adaptation and evolution. In the last ten years, I pushed forward the knowledge frontier around three main questions:

What are the consequences of interspecific hybridization and polyploidy on genome organization, and how do these changes contribute to functional diversification and adaptation to the environment?

How important is epigenetics in fostering new functional traits and adapted phenotypes to contrasted environments and herbivory?

What is the extent of the unexplored diversity (structural variants, genetics and epigenetics) at the intraspecific and interspecific levels, and how much of this diversity could be harvested to enhance plant response to biotic and abiotic cues?

Scientific Skills

Comparative genomics and transcriptomics: Bioinformatics analyses, assemblies, annotations, differential gene transcription, SNP calling and identification of promoter regions and Transposable Elements

Phylogeny, Quantitative and Population Genetics

: Neighbor Joining, Maximum Likelihood and Maximum Parsimony, Population structure, Genome Wide Association Studies, Genotyping analyses (DNA-Seq and DNA microarrays)

Bio-statistics and environments

: Experimental designs (RCBD), parametric and non-parametric tests, linear models, mixed models. R programming, Rstudio, Galaxy and Unix, knowledge in Python programming

Molecular Biology

: DNA, RNA extractions, cDNA synthesis, PCR, real-time quantitative PCR and derived methods, cloning and sequencing, library preparation for different sequencing platforms

Epigenomics

: Bisulfite treatment and sequencing (WGBS, Epi-GBS), differential methylation level analyses, smallRNA extraction and analyses

Publications

Article dans une revue (27)

Nucleolar dominance arises in Spartina homoploid hybrids and persists after allopolyploidization Alena Kuderova,Dalibor Huska,Julie Ferreira de Carvalho,Roman Matyasek,Ilia J Leitchet al. The Plant Journal, 2026, 125 (5), pp.e70770. ⟨10.1111/tpj.70770⟩ Article dans une revue hal-05574650v1
When Metabolomics Meets Quantitative Genetics: An Integrative Strategy to Elucidate Plant Resistance Mechanisms Romane Lapous,Komla Exonam Amegan,Bernard Caromel,Charles‐eric Durel,Anne‐violette Lavoiret al. Plant, Cell and Environment, 2025, pp.1-16. ⟨10.1111/pce.70328⟩ Article dans une revue hal-05443704v1
Metabolomic datasets of an apple progeny carrying resistance quantitative trait loci to apple scab before or after inoculation of the pathogen Venturia inaequalis Romane Lapous,Florent Magot,Romain Larbat,Caroline Denancé,Christian Cattanéoet al. Data in Brief, 2025, 60, pp.111566. ⟨10.1016/j.dib.2025.111566⟩ Article dans une revue (data paper) hal-05069503v1
Phenotyping data coupled with RNA sequencing of apple genotypes exhibiting contrasted quantitative trait loci architecture for apple scab (Venturia inaequalis) resistance Juliette Bénéjam,Julie Ferreira de Carvalho,Elisa Ravon,Christelle Heintz,Matthieu Gaucheret al. Data in Brief, 2024, 56, pp.110778. ⟨10.1016/j.dib.2024.110778⟩ Article dans une revue (data paper) hal-04854227v1
Combined cytogenetic and molecular methods for taxonomic verification and description of Brassica populations deriving from different origins Cyril Falentin,Houria Hadj-Arab,Fella Aissiou,Claudia Bartoli,Giuseppe Bazanet al. Genetic Resources, 2024, 5 (9), pp.61-71. ⟨10.46265/genresj.ryaj6068⟩ Article dans une revue hal-04608007v1
Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome sequences from dandelion (Taraxacum officinale) Wei Xiong,Judith Risse,Lidija Berke,Tao Zhao,Henri van de Geestet al. Frontiers in Plant Science, 2023, 14, ⟨10.3389/fpls.2023.1198909⟩ Article dans une revue hal-04233722v1
Projet BrasExplor : élargir les ressources génétiques du CRB BrACySol pour Brassica oleracea et Brassica rapa Cyril Falentin,Vincent Richer,Pascal Glory,Gwenaëlle Deniot,Julie Ferreira de Carvalhoet al. NOV'AE - Numéros spéciaux, 2022, Numéro Spécial #2 RARe, pp.21-27. ⟨10.17180/novae-2022-NS02-art03⟩ Article dans une revue hal-03790700v1
Identification and Quantification of Glucosinolates and Phenolics in a Large Panel of Brassica napus Highlight Valuable Genetic Resources for Chemical Ecology and Breeding Anani Amegan Missinou,Julie Ferreira de Carvalho,Nathalie Marnet,Thomas Delhaye,Oumayma Hamzaouiet al. Journal of Agricultural and Food Chemistry, 2022, 70 (16), pp.5245-5261. ⟨10.1021/acs.jafc.1c08118⟩ Article dans une revue hal-03700611v1
Epigenomic and structural events preclude recombination in Brassica napus Franz Boideau,Gautier Richard,Olivier Coriton,Virginie Huteau,Caroline Belseret al. New Phytologist, 2022, 234 (2), pp.545-559. ⟨10.1111/nph.18004⟩ Article dans une revue hal-03651949v1
Untangling structural factors driving genome stabilization in nascent Brassica napus allopolyploids Julie Ferreira de Carvalho,Solenn Stoeckel,Frédérique Eber,Maryse Lodé-Taburel,Marie-Madeleine Giletet al. New Phytologist, 2021, 230 (5), pp.2072-2084. ⟨10.1111/nph.17308⟩ Article dans une revue hal-03227311v1
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa Julien Boutte,Loeiz Maillet,Thomas Chaussepied,Sébastien Letort,Jean-Marc Auryet al. Frontiers in Plant Science, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩ Article dans une revue hal-03137565v1
Long-read assembly of the Brassica napus reference genome Darmor-bzh Mathieu Rousseau-Gueutin,Caroline Belser,Corinne Da silva,Gautier Richard,Benjamin Istaceet al. GigaScience, 2020, 9 (12), pp.giaa137. ⟨10.1093/gigascience/giaa137⟩ Article dans une revue (data paper) hal-03283975v1
Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling pathway Thanina Azibi,Houria Hadj-Arab,Maryse Lodé-Taburel,Julie Ferreira de Carvalho,Gwenn Trotouxet al. Sexual Plant Reproduction, 2020, 33 (1), pp.43-58. ⟨10.1007/s00497-020-00385-x⟩ Article dans une revue hal-02784702v1
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica Julie Ferreira de Carvalho,Jérémy Lucas,Gwenaëlle Deniot,Cyril Falentin,Olivier Filangiet al. The Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩ Article dans une revue hal-02019346v1
Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion Koen Verhoeven,Eline Verbon,Thomas van Gurp,Carla Oplaat,Julie Ferreira de Carvalhoet al. New Phytologist, 2018, 217 (2), pp.871-882. ⟨10.1111/nph.14835⟩ Article dans une revue hal-03292207v1
Transcriptome response of the foundation plant Spartina alterniflora to the Deepwater Horizon oil spill Mariano Alvarez,Julie Ferreira de Carvalho,Armel Salmon,Malika L Ainouche,Armand Cavé-Radetet al. Molecular Ecology, 2018, 27 (14), pp.2986-3000. ⟨10.1111/mec.14736⟩ Article dans une revue hal-01811051v2
Small RNAs Reflect Grandparental Environments in Apomictic Dandelion Lionel Morgado,Veronica Preite,Carla Oplaat,Sarit Anava,Julie Ferreira de Carvalhoet al. Molecular Biology and Evolution, 2017, 34 (8), pp.2035-2040. ⟨10.1093/molbev/msx150⟩ Article dans une revue hal-03292326v1
Gene expression variation in natural populations of hexaploid and allododecaploid Spartina species (Poaceae) Julie Ferreira de Carvalho,Julien Boutte,Pierre Bourdaud,Houda Chelaifa,Kader Ainoucheet al. Plant Systematics and Evolution, 2017, 303 (8), pp.1061-1079. ⟨10.1007/s00606-017-1446-3⟩ Article dans une revue hal-01631555v1
The relative roles of local climate adaptation and phylogeny in determining leaf-out timing of temperate tree species Elsa Desnoues,Julie Ferreira de Carvalho,Constantin Zohner,Thomas Crowther Forest Ecosystems, 2017, 4 (1), ⟨10.1186/s40663-017-0113-z⟩ Article dans une revue hal-03292321v1
Recent and dynamic transposable elements contribute to genomic divergence under asexuality Julie Ferreira de Carvalho,Victor de Jager,Thomas van Gurp,Niels Wagemaker,Koen Verhoeven BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-3234-9⟩ Article dans une revue hal-03292332v1
Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima Julien Boutte,Benoît Aliaga,Oscar Lima,Julie Ferreira de Carvalho,Abdelkader Aïnoucheet al. G3, 2016, 6 (1), pp.29--40. ⟨10.1534/g3.115.023242⟩ Article dans une revue hal-01269912v1
Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae) Julie Boutte,Julie Ferreira de Carvalho,Mathieu Rousseau-Gueutin,Julie Poulain,Corinne da Silvaet al. Genome Biology and Evolution, 2016, 8 (9), pp.3030-3044. ⟨10.1093/gbe/evw209⟩ Article dans une revue hal-01412081v1
Persistence, dispersal and genetic evolution of recently formed Spartina homoploid hybrids and allopolyploids in Southern England Dalibor Huska,Ilia J. Leitch,Julie Ferreira de Carvalho,Andrew R. Leitch,Armel Salmonet al. Biological Invasions, 2016, 18 (8), pp.2137-2151. ⟨10.1007/s10530-015-0956-6⟩ Article dans une revue hal-01371822v1
Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants Julie Ferreira de Carvalho,Carla Oplaat,Nikolaos Pappas,Martijn Derks,Dick de Ridderet al. BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2524-6⟩ Article dans une revue hal-03292408v1
The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family Guillaume E. Martin,Mathieu Rousseau-Gueutin,Solenn Cordonnier,Oscar Lima,Sophie Michon-Coudouelet al. Annals of Botany, 2014, 113 (7), pp.1197-1210. ⟨10.1093/aob/mcu050⟩ Article dans une revue hal-01061902v1
Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae) Julie Ferreira de Carvalho,Julie Poulain,Corinne da Silva,Patrick Wincker,Sophie Michon-Coudouelet al. Heredity, 2013, 110 (2), pp.181-193. ⟨10.1038/hdy.2012.76⟩ Article dans une revue hal-00797941v1
Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis Julie Ferreira de Carvalho,Houda Chelaifa,Julien Boutte,Julie Poulain,Arnaud Coulouxet al. Plant Molecular Biology, 2013, 83 (6), pp.606. ⟨10.1007/s11103-013-0111-7⟩ Article dans une revue istex hal-00943497v1

Chapitre d'ouvrage (2)

The Intertwined Chloroplast and Nuclear Genome Coevolution in Plants Mathieu Rousseau-Gueutin,Jean Keller,Julie Ferreira de Carvalho,Abdelkader Ainoüche,Guillaume Martin Diah Ratnadewi; Dr. Hamim. Plant Growth and Regulation - Alterations to Sustain Unfavorable Conditions, InTechOpen, 2018, 978-1-78984-285-2. ⟨10.5772/intechopen.75673⟩ Chapitre d'ouvrage hal-02787510v1
Polyploid evolution in Spartina: Dealing with highly redundant genomes Malika L. Aïnouche,Houda Chelaifa,Julie Ferreira de Carvalho,Sidonie Bellot,Abdelkader Aïnoucheet al. Pamela S. Soltis, Douglas E. Soltis. Polyploidy and Genome Evolution, Springer, pp.225-244, 2012, 978-3-642-31441-4 Chapitre d'ouvrage hal-01110233v1

Communication dans un congrès (29)

Investigation of molecular mechanisms implicated in apple scab quantitative resistance using untargeted metabolic QTL mapping Romane Lapous,Florent Magot,Romain Larbat,Helene Muranty,Charles-Eric Durelet al. Scientific Day of Doctoral School VAAME, Jun 2024, Nantes (France), France Communication dans un congrès hal-04665611v1
Combinaison de données “-omiques” pour prédire la résistance du pommier à la tavelure Romane Lapous,Caroline Denancé,Julie Ferreira de Carvalho,Charles-Eric Durel,Hélène Muranty Séminaire du réseau R2D2, Nov 2023, Angers, France Communication dans un congrès hal-04665615v1
Genome Stabilization after Allopolyploidization in nascent Brassica napus Julie Ferreira de Carvalho,Solenn Stoeckel,Frédérique Eber,Maryse Lodé-Taburel,Marie- Madeleine Giletet al. Plant and Animal Genome Conference, Jan 2020, San Diego (California), United States Communication dans un congrès hal-04665576v1
Co-evolution of chloroplast and nuclear genomes in flowering plants and impact of allopolyploidy on fine tune cytonuclear interactions. Mathieu Rousseau-Gueutin,Julie Ferreira de Carvalho,Jérémy Lucas,Gwenaëlle Deniot,Cyril Falentinet al. International Conference on Polyploidy, Jun 2019, Ghent, Belgium Communication dans un congrès hal-03318182v1
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated wholegenome duplications Julie Ferreira de Carvalho,Jérémy Lucas,Gwenaëlle Deniot,Cyril Falentin,Olivier Filangiet al. 21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint Malo, France Communication dans un congrès hal-04665569v1
Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus Mathieu Rousseau-Gueutin,Jérémy Lucas,France Denoeud,Julie Ferreira de Carvalho,Zhesi Heet al. 21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France Communication dans un congrès hal-03318226v1
Genome merger and duplication as springboards for plant invasion: Lessons from Spartina Malika L. Aïnouche,Armand Cavé-Radet,Delphine Giraud,Alex Baumel,Blanca Gallego-Tévaret al. International Conference on Ecological Sciences, SFEcologie2018, SFEcologie, Oct 2018, Rennes, France Communication dans un congrès hal-02436817v1
Impact of structural variations on the meiotic stability and plant fertility of the allotetraploid B. napus (oilseed rape) Mathieu Rousseau-Gueutin,Julie Ferreira de Carvalho,Solenn Stoeckel,Jérôme Morice,Marie-Madeleine Giletet al. Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France Communication dans un congrès hal-03318231v1
How a polyploid becomes a new species: example from the Brassica model. Mathieu Rousseau-Gueutin,Julie Ferreira de Carvalho,J. Lucas,France Denoeud,Fabrice Legeaiet al. International Conference on Environmental and Agronomical Genomics, 2018, Paris, France Communication dans un congrès hal-03318223v1
Structural and functional consequences of transposable elements after multiple Whole-Genome Duplication events Julie Ferreira de Carvalho,Thomas Chaussepied,Sébastien Letort,Anne-Marie Chèvre,Mathieu Rousseau-Gueutin Dynamique des Génomes végétaux, 2018, Rennes, France Communication dans un congrès hal-03318224v1
Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling Julie Ferreira de Carvalho,Jérémy Lucas,Cyril Falentin,Gwenaëlle Deniot,Olivier Filangiet al. Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France Communication dans un congrès hal-03318235v1
Transcriptomic responses to challenging environments in Spartina alterniflora populations Christina L. Richards,Mariano Alvarez,Julie Ferreira de Carvalho,Armand Cavé-Radet,Abdelhak El Amraniet al. Workshop DYNAGEV2017, Jun 2017, Montpellier, France Communication dans un congrès hal-02435012v1
Unending hybridization and polyploid speciation stories: Lessons from Spartina (Poaceae) Malika L. Aïnouche,Alex Baumel,Blanca Gallego-Tévar,Jesus Castillo,Mathieu Rousseau-Gueutinet al. XV OPTIMA Meeting, Organization for the Phyto-Taxonomic Investigation of the Mediterranean Area, Jun 2016, Montpellier, France Communication dans un congrès hal-02422822v1
Genome merger as evolutionary springboard: Insights from recurrent hybridization and polyploidy in Spartina Malika L. Aïnouche,Houda Chelaifa,Mathieu Rousseau-Gueutin,Julien Boutte,Hélène Rousseauet al. International Conference on Hybridization and Polyploidy (ICPHB-2016), Apr 2016, Rovinj, Croatia Communication dans un congrès hal-02422781v1
Polyploidy, genome evolution and functional novelty in genus SpartinaI (Poaceae) Malika Ainouche,Mathieu Rousseau-Gueutin,Hélène Rousseau,Julien Boutte,Sidonie Bellotet al. International Conference « Evolution of Plant Phenotypes: from genomes to traits », Mar 2015, Barcelone, Spain Communication dans un congrès hal-01162082v1
The challenges of genomics in polyploidy Spartina species: How to deal with hybrid genomes and high redundancy? Armel Salmon,Julien Boutte,Julie Ferreira de Carvalho,Mathieu Rousseau-Gueutin,Malika Ainouche PAG XXIII Plant and Animal Genome Conference, Jan 2015, San Diego, United States Communication dans un congrès hal-01162085v1
The challenges of genomics in polyploidy Spartina species: How to deal with hybrid genomes and high redundancy? Armel Salmon,Julien Boutte,Julie Ferreira de Carvalho,Mathieu Rousseau-Gueutin,Malika L. Aïnouche PAG XXIII Plant and Animal Genome Conference, Jan 2015, San Diego, United States Communication dans un congrès hal-02422739v1
Transcriptomic response to hydrocarbon stress in Spartina alterniflora Mariano Alvarez,Armel Salmon,Julie Ferreira de Carvalho,Malika Ainouche,Christina L. Richards International Conference on Invasive Spartina 2014, UMR CNRS 6553 ECOBIO, Jul 2014, Rennes, France Communication dans un congrès hal-01108408v1
Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass family Carine Charron,Mathieu Rousseau-Gueutin,Julie Ferreira de Carvalho,Houda Chelaifa,Julien Boutteet al. Réunion du groupe « Cytogénétique et Polyploïdie », May 2014, Clermont-Ferrand, France Communication dans un congrès hal-01108395v1
Hybridation, polyploidie et evolution des génomes : le cas des spartines envahissant les marais salés Malika Ainouche,Armel Salmon,Mathieu Rousseau-Gueutin,Julien Boutte,Hélène Rousseauet al. Colloque de lancement du Groupement de Recherches CNRS « Invasions Biologiques », UMR CNRS 6553 ECOBIO, Oct 2014, Rennes, France Communication dans un congrès hal-01108368v1
Recurrent polyploidy in the salt marsh genus Spartina: Lessons and challenges Malika Ainouche,Julie Ferreira de Carvalho,Julien Boutte,Sidonie Bellot,Mathieu Rousseau-Gueutinet al. PAG XXII Plant and Animal Genome Conference, Jan 2014, San Diego, United States. 1 p Communication dans un congrès hal-01108383v1
The challenges of genomics in polyploid Spartina species: How to deal with hydrid genomes and high redundancy? Armel Salmon,Julien Boutte,Julie Ferreira de Carvalho,Mathieu Rousseau-Gueutin,Malika Ainouche International Conference on Invasive Spartina 2014, Jul 2014, Rennes, France Communication dans un congrès hal-01108413v1
Population level study of genetic and epigenetic variability of rRNA genes in invasive species Spartina anglica D. Huskaz,Julie Ferreira de Carvalho,Andrew Leitch,Malika Ainouche,Ales Kovarik French Annual Polyploidy and Cytogenetics Meeting, May 2013, Rennes, France Communication dans un congrès hal-01108846v1
Polyploidy speciation and genome evolution: Lessons from recent allopolyploids Malika Ainouche,Houda Chelaifa,Julie Ferreira de Carvalho,Julien Boutte,Sidonie Bellotet al. 17. Evolutionary Biology Meeting, Sep 2013, Marseille, France Communication dans un congrès hal-01108428v1
Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in the hexaploid Spartina maritime (Poaceae) Julien Boutte,Benoit Aliaga,Julie Ferreira de Carvalho,Oscar Lima,Sophie Coudouelet al. Rencontres ALPHY/PhyloSIB, Feb 2013, Lyon, France Communication dans un congrès hal-01108442v1
Evolutionary dynamics of the chloroplast genome: Insights from comparative analyses in the legume family Mathieu Rousseau-Gueutin,Guillaume Martin,Solene Cordonnier,Oscar Lima,Sophie Michon-Coudouelet al. Colloque « Génomique Environnementale », Nov 2013, Rennes, France Communication dans un congrès hal-01108884v1
Ecological genomics of invasive polyploids: Case study from hexaploid and allo-dodecaploid Spartina species colonizing salt marshes Julie Ferreira de Carvalho,Julie Poulain,Corinne da Silva,Patrick Wincker,Sophie Coudouelet al. International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Pruhonice, Czech Republic Communication dans un congrès hal-01108907v1
Ecological genomics of the recent Spartina hybrids and allopolyploid invading salt-marshes Malika L. Aïnouche,Houda Chelaifa,Julie Ferreira de Carvalho,Sidonie Bellot,Armel Salmon 13th Congress of the European Society for Evolutionary Biology, European Society for Evolutionary Biology, Aug 2011, Tübingen, Germany Communication dans un congrès hal-01108929v1
Vers la caractérisation des compartiments codant et répété du génome des spartines polyploïdes par séquençage en masse Julie Ferreira de Carvalho,Houda Chelaifa,Jiri Macas,Oscar Lima,Sophie Coudouelet al. Colloque « Biodiversité, Histoire des Espèces, Evolution des Génomes », Jun 2011, Rennes, France Communication dans un congrès hal-01108953v1

Poster de conférence (11)

Identifying pleiotropic alleles in biotic stress resistance and exploring underlying molecular mechanisms for apple orchard durability Paul Galleron,Caroline Denancé,Matthieu Gaucher,Charles-Eric Durel,Helene Murantyet al. 12th Rosaceae Genomics Conference (RGC 12), May 2025, Sant Feliu de Guíxols, Spain Poster de conférence hal-05085632v1
Development and preliminary analysis of a new multispecies genotyping array including apple and pear SNPs Caroline Denancé,Julie Ferreira de Carvalho,Nicholas Howard,Elena López-Girona,David Chagnéet al. 12. Rosaceae Genomics Conference (RGC 12), May 2025, Sant Feliu de Guíxols, Spain Poster de conférence hal-05085584v1
Investigation of molecular mechanisms involved in apple scab quantitative resistance using untargeted metabolic QTL mapping Romane Lapous,Romain Larbat,Florent Magot,Helene Muranty,Charles-Eric Durelet al. 12th Rosaceae Genomics Conference (RGC 12), May 2025, Sant Feliu de Guíxols, Spain Poster de conférence hal-05085648v1
Genome-wide association studies to detect new resistance alleles for apple scab and fire blight Paul Galleron,Laval Jacquin,Caroline Denancé,Romane Lapous,Charles-Eric Durelet al. DynaGev, Oct 2024, ANGERS, France Poster de conférence hal-04728149v1
Investigation of molecular mechanisms implicated in apple scab quantitative resistance using untargeted metabolic QTL mapping Romane Lapous,Florent Magot,Helene Muranty,Charles-Eric Durel,Julie Ferreira de Carvalho XVI EUCARPIA Symposium on Fruit Breeding and Genetics, Sep 2023, Dresden-Pillnitz, Germany Poster de conférence hal-04665619v1
Functional consequences of transposable elements on duplicated gene transcription and retention in polyploid Brassica species Julie Ferreira de Carvalho,Julien Boutte,Loeiz Maillet,Thomas Chaussepied,Sébastien Letortet al. International Conference on Polyploidy, Jun 2019, Ghent, Belgium Poster de conférence hal-03318194v1
Shift to self-compatibility in synthetic allopolyploid Brassica napus Thanina Azibi,Mathieu Rousseau-Gueutin,Gwenn Trotoux,Maryse Lodé-Taburel,Julie Ferreira de Carvalhoet al. 21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2018, Saint-Malo, France Poster de conférence hal-03318239v1
Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass family Carine Charron,Mathieu Rousseau-Gueutin,Julie Ferreira de Carvalho,Houda Chelaifa,Julien Boutteet al. International Conference on Invasive Spartina 2014, Jul 2014, Rennes, France. , 1 p., 2014 Poster de conférence hal-01109652v1
The hexaploid Spartina maritime (Poaceae, Chloridoidea) genome: Composition and evolution in the grass family Julie Ferreira de Carvalho,Carine Charron,Houda Chelaifa,Julien Boutte,Mathieu Rousseau-Gueutinet al. Plant Genome Evolution Meeting, Sep 2013, Amsterdam, Netherlands. , 2013 Poster de conférence hal-01110188v1
Genome and transcriptome analyses in hexaploid Spartina species (Poaceae) colonizing salt marshes Julie Ferreira de Carvalho,Julie Poulain,Corinne da Silva,Patrick Wincker,Sophie Coudouelet al. PAG XIX Plant and Animal Genome Conference, Jan 2012, San Diego, United States Poster de conférence hal-01110212v1
Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in hexaploid Spartina species (Poaceae) Julien Boutte,Benoit Aliaga,Julie Ferreira de Carvalho,Oscar Lima,Sophie Coudouelet al. International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Prague, Czech Republic Poster de conférence hal-01110201v1

Pré-publication, Document de travail (2)

Phenotyping Data Coupled with Rna Sequencing of Apple Genotypes Exhibiting Contrasted Quantitative Trait Loci Architecture for Apple Scab (Venturia Inaequalis) Resistance Juliette Bénéjam,Julie Ferreira de Carvalho,Elisa Ravon,Christelle Heintz,Matthieu Gaucheret al. 2024 Pré-publication, Document de travail hal-04665550v1
Warnings/Cautions when collecting Brassica diversity along a large climatic gradient Cyril Falentin,Houria Hadj-Arab,Fella Aissiou,Claudia Bartoli,Giuseppe Bazanet al. 2024 Pré-publication, Document de travail hal-04701870v1

Thèse (1)

Évolution du génome des spartines polyploïdes envahissant les marais salés : apport des nouvelles techniques de séquençage haut-débit Julie Ferreira de Carvalho Sciences agricoles. Université de Rennes, 2013. Français. ⟨NNT : 2013REN1S002⟩ Thèse tel-00795861v1