Julie Lao

Publications

Article dans une revue (9)

Pre-existing β-lactamase gene diversity is associated with lower risk of ESBL-producing Enterobacterales colonization in patients exposed to ceftriaxone Quentin Le Bastard,Rémi Gschwind,Julie Lao,Marie-Anne Vibet,Eric Batardet al. Gut microbes, 2026, 18 (1), pp.2627692. ⟨10.1080/19490976.2026.2627692⟩ Article dans une revue inserm-05506429v1
Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates Jeanne Laurentie,Valentin Loux,Christelle Hennequet-Antier,Emilie Chambellon,Julien Deschampset al. MSphere, 2023, 8 (2), pp.e0049522. ⟨10.1128/msphere.00495-22⟩ Article dans une revue hal-04004063v1
A New Integrative and Mobilizable Element Is a Major Contributor to Tetracycline Resistance in Streptococcus dysgalactiae subsp. equisimilis Guillem López de Egea,Aida González-Díaz,Gérard Guédon,Julie Lao,Dàmaris Berbelet al. Antibiotics, 2023, 12 (3), pp.579. ⟨10.3390/antibiotics12030579⟩ Article dans une revue hal-04085227v1
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics Rémi Gschwind,Svetlana Ugarcina Perovic,Maja Weiss,Marie Petitjean,Julie Laoet al. Nucleic Acids Research, 2023, 51 (W1), pp.W493-W500. ⟨10.1093/nar/gkad384⟩ Article dans une revue inserm-04510976v1
FirmiData: a set of 40 genomes of Firmicutes with a curated annotation of ICEs and IMEs Gérard Guédon,Julie Lao,Sophie Payot,Thomas Lacroix,Hélène Chiapelloet al. BMC Research Notes, 2022, 15 (1), pp.157. ⟨10.1186/s13104-022-06036-w⟩ Article dans une revue (data paper) hal-03971919v1
Prevalence and mobility of integrative and conjugative elements within a Streptomyces natural population Caroline Choufa,Abdoul-Razak Tidjani,Anthony Gauthier,Manar Harb,Julie Laoet al. Frontiers in Microbiology, 2022, 13, ⟨10.3389/fmicb.2022.970179⟩ Article dans une revue hal-03775996v1
ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures Julie Lao,Thomas Lacroix,Gérard Guédon,Charles Coluzzi,Sophie Payotet al. NAR Genomics and Bioinformatics, 2022, 4 (4), pp.lqac079. ⟨10.1093/nargab/lqac079⟩ Article dans une revue hal-03832376v1
Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment Julie Lao,Gérard Guédon,Thomas Lacroix,Florence Charron-Bourgoin,Virginie Libanteet al. Genes, 2020, ⟨10.3390/genes11090999⟩ Article dans une revue hal-02922962v1
A New Strategy to Reduce Influenza Escape: Detecting Therapeutic Targets Constituted of Invariance Groups Julie Lao,Anne Vanet Viruses, 2017, 9 (3), pp.38. ⟨10.3390/v9030038⟩ Article dans une revue hal-01898706v1

Communication dans un congrès (5)

ABRomics : Une plateforme basée sur Galaxy pour la recherche sur la résistance aux antibiotiques et la santé publique Cléa Siguret,Bérénice Batut,Raphaël Tackx,Julie Lao,Amanda Dieuaideet al. Journée d’animation annuelle de la plateforme AuBi 2024, Plateforme Auvergne Bioinformatique (AuBi), Dec 2024, Aubière / Clermont-Ferrand, France Communication dans un congrès hal-05084079v1
ABRomics: An integrated multi-omics platform for antibiotic resistance research and public health Julie Lao,Pierre Marin,Romain Dallet,Fabien Mareuil,Alix De Toisyet al. 18ème congrès national de la SFM: MICROBES 2023, Société Français de Microbiologie, Oct 2023, Le couvant des Jacobins, Rennes, France Communication dans un congrès hal-04369101v1
ICEscreen: a valuable tool for automatic detection of ICEs and IMEs in Firmicutes Nathalie N. Leblond-Bourget,Julie Lao,Sophie Payot,Thomas Lacroix,Gérard Guédonet al. Réunion du GDR3546 Eléments transposables, Dec 2022, Paris, France Communication dans un congrès hal-04232460v1
Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment. Julie Lao,Gérard Guédon,Thomas Lacroix,Florence Charron-Bourgoin,Virginie Libanteet al. Réunion du GDR3546 Eléments transposables, Dec 2021, Paris, France Communication dans un congrès hal-03495840v1
The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus. Charles Coluzzi,Julie Lao,Gérard Guédon,Marie-Dominique Devignes,Chloé Ambrosetet al. 8th symposium on Antimicrobial Resistance in Animal and Environment, Jul 2019, Tours, France Communication dans un congrès hal-02974531v1

Poster de conférence (10)

The ABRomics platform — a One Health Antimicrobial resistance analysis service Julie Lao,Raphael Tackx,Pierre Marin,Amanda Dieuaide,Thomas Mignonet al. Journées Ouvertes en Biologie, Informatique, et Mathématiques - 2024, Jun 2024, Toulouse, France Poster de conférence hal-04618645v1
ABRomics: A Galaxy-based one health antimicrobial resistance platform Pierre Marin,Bérénice Batut,Kenzo-Hugo Hillion,Clea Siguret,Raphael Tackxet al. GCC 2024 - Galaxy Community Conference 2024, Jun 2024, Brno, Czech Republic. , ⟨10.7490/f1000research.1119762.1⟩ Poster de conférence hal-04619528v1
ABRomics: An integrated multi-omics platform for antibiotic resistance research and public health Julie Lao,Pierre Marin,Romain Dallet,Fabien Mareuil,Alix De Toisyet al. 9ème symposium sur la résistance aux antimicrobiens chez les animaux et dans l'environnement (ARAE 2023), Jul 2023, Vinci International Convention Centre, Tours, France Poster de conférence hal-04369175v1
ABRomics: An integrated multi-omics platform for antibiotic resistance research and public health Julie Lao,Pierre Marin,Romain Dallet,Fabien Mareuil,Alix De Thoisyet al. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM ) 2023, Jun 2023, Plouzané, France Poster de conférence hal-04369161v1
ABRomics - an open access online platform on antimicrobial resistance to store, integrate, analyze and share multi-omics data Julie Lao,Pierre Marin,Romain Dallet,Fabien Mareuil,Alix De Toisyet al. FEMS 2023 European Congress of Microbiology, Jul 2023, Congress Center Hamburg Hamburg, Germany, Germany Poster de conférence hal-04369134v1
ABRomics - a digital platform on antimicrobial resistance to store, integrate, analyze and share multi-omics data Pierre Marin,Julie Lao,Kenzo-Hugo Hillion,Aurélien Birer,Nadia Gouéet al. JOURNÉES OUVERTES EN BIOLOGIE, INFORMATIQUE ET MATHÉMATIQUES ( JOBIM ) 2022, Jul 2022, Rennes, France. Actes JOBIM 2022 Poster de conférence hal-04369049v1
Abundance and diversity of Mobile Genetic Elements carrying antibiotic resistance genes and transferring by conjugation in the human commensal bacterium Streptococcus salivarius. Sophie Payot,Julie Lao,Gérard Guédon,Thomas Lacroix,Florence Charron-Bourgoinet al. 5th International Caparica Congress in Antibiotic Resistance (IC2AR 2022), Sep 2022, Caparica, Lisbon, Portugal Poster de conférence hal-04232454v1
The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus Charles Coluzzi,Julie Lao,Gérard Guédon,Marie-Dominique Devignes,Chloé Ambrosetet al. 4th International Workshop on Streptococcus suis, Jun 2019, Montréal, Canada. Poster de conférence hal-02974525v1
Towards an integrated approach for the annotation of ICEs and IMEs in bacterial genomes Julie Lao,Gérard Guédon,Thomas Lacroix,Nathalie N. Leblond-Bourget,Helene H. Chiapello JOBIM 2018, Jul 2018, Marseille, France Poster de conférence hal-01829606v1
Comparison of statistical methods of inference of cooccurrence networks within micro- bial ecosystems from metagenomics data Sophie Schbath,Mahendra Mariadassou,Julie Lao JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 Poster de conférence hal-01563604v1

Pré-publication, Document de travail (1)

Comparative genome analysis of Enterococcus cecorum reveals intercontinental spread of a lineage of clinical poultry isolates Jeanne Laurentie,Valentin Loux,Christelle Hennequet-Antier,Emilie Chambellon,Julien Deschampset al. 2023 Pré-publication, Document de travail hal-04281314v1

Thèse (1)

Conception et mise en oeuvre d’une approche bioinformatique dédiée à l’identification des ICE, IME et éléments composites dans les génomes de Firmicutes Julie Lao Ecotoxicologie. Université de Lorraine, 2021. Français. ⟨NNT : 2021LORR0063⟩ Thèse tel-03274589v1

Logiciel (1)

ICEscreen Hélène Chiapello,Charles Coluzzi,Nathalie N. Leblond-Bourget,Thomas Lacroix,Julie Laoet al. 2022, ⟨swh:1:dir:39855033173eb6e930cc148edef34905b34e8459;origin=https://hal.archives-ouvertes.fr/hal-03610196;visit=swh:1:snp:5f80897225e2e86613b5b10e7bdd103858426c8a;anchor=swh:1:rel:633a56d28c36ec614cb05ae1ab0494639c7e84af;path=/⟩ Logiciel hal-03610196v2