Julie Thompson

Publications

Article dans une revue (69)

Transcriptomic characterization of postnatal muscle maturation in mice, with a focus on myopathy-associated genes Alix Simon,Sarah Djeddi,Pauline Bournon,David Reiss,Julie Thompsonet al. Disease Models & Mechanisms, 2025, 18 (2), pp.DMM052098. ⟨10.1242/dmm.052098⟩ Article dans une revue hal-04939413v1
Integrative multi-omics and network analyses reveal pathogenic and protective pathways in centronuclear myopathies Alix Simon,Charlotte Gineste,David Reiss,Julie Thompson,Jocelyn Laporte International Journal of Molecular Sciences, 2025, 26 (23), ⟨10.3390/ijms262311572⟩ Article dans une revue hal-05386294v1
StopKB: a comprehensive knowledgebase for nonsense suppression therapies Nicolas Haas,Julie Thompson,Jean-Paul Renaud,Kirsley Chennen,Olivier Poch Database - The journal of Biological Databases and Curation, 2024, 2024, ⟨10.1093/database/baae108⟩ Article dans une revue hal-04752787v1
Graph-based machine learning model for weight prediction in protein–protein networks Hajer Akid,Kirsley Chennen,Gabriel Frey,Julie D. Thompson,Mounir Ben Ayedet al. BMC Bioinformatics, 2024, 25 (1), pp.349. ⟨10.1186/s12859-024-05973-6⟩ Article dans une revue hal-04941825v1
De-MISTED: Image-based classification of erroneous multiple sequence alignments using convolutional neural networks Hiba Khodji,Pierre Collet,Julie D. Thompson,Anne Jeannin-Girardon Applied Intelligence, 2023, 53 (15), pp.18806-18820. ⟨10.1007/s10489-022-04390-7⟩ Article dans une revue hal-04253859v1
Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events Arnaud Kress,Olivier Poch,Odile Lecompte,Julie Thompson Frontiers in Bioinformatics, 2023, 3, ⟨10.3389/fbinf.2023.1178926⟩ Article dans une revue hal-04075117v2
CeGAL: Redefining a Widespread Fungal-Specific Transcription Factor Family Using an In Silico Error-Tracking Approach Claudine Mayer,Arthur Vogt,Tuba Uslu,Nicolas Scalzitti,Kirsley Chennenet al. Journal of Fungi, 2023, 9 (4), pp.424. ⟨10.3390/jof9040424⟩ Article dans une revue hal-04253824v1
Spliceator: multi-species splice site prediction using convolutional neural networks Nicolas Scalzitti,Arnaud Kress,Romain Orhand,Thomas Weber,Luc Moulinieret al. BMC Bioinformatics, 2021, 22, pp.561. ⟨10.1186/s12859-021-04471-3⟩ Article dans une revue hal-03464474v1
Multi-omics comparisons of different forms of centronuclear myopathies and the effects of several therapeutic strategies Sarah Djeddi,David Reiss,Alexia Menuet,Sébastien Freismuth,Juliana de Carvalho Neveset al. Molecular Therapy, 2021, ⟨10.1016/j.ymthe.2021.04.033⟩ Article dans une revue hal-03245652v1
Integrative approach to interpret DYRK1A variants, leading to a frequent neurodevelopmental disorder Jérémie Courraud,Eric Chater-Diehl,Benjamin Durand,Marie Vincent,Maria del Mar Muñiz Morenoet al. Genetics in Medicine, 2021, 23 (11), pp.2150-2159. ⟨10.1038/s41436-021-01263-1⟩ Article dans une revue hal-03269307v1
BNO An ontology for understanding the transittability of complex biomolecular networks Ali Ayadi,Cecilia Zanni-Merk,François de Bertrand de Beuvron,Julie D. Thompson,Saoussen Krichen Journal of Web Semantics, 2020, 24 p. ⟨10.2139/ssrn.3320403⟩ Article dans une revue hal-03484275v1
Characterization of accessory genes in coronavirus genomes Christian Jean Michel,Claudine Mayer,Olivier Poch,Julie D. Thompson Virology Journal, 2020, 17 (1), pp.131. ⟨10.1186/s12985-020-01402-1⟩ Article dans une revue hal-03464220v1
Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes Corentin Meyer,Nicolas Scalzitti,Anne Jeannin-Girardon,Pierre Collet,Olivier Pochet al. BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-020-03855-1⟩ Article dans une revue hal-03464210v1
A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms Nicolas Scalzitti,Anne Jeannin-Girardon,Pierre Collet,Olivier Poch,Julie D. Thompson BMC Genomics, 2020, 21 (1), ⟨10.1186/s12864-020-6707-9⟩ Article dans une revue hal-03464195v1
Proteome-scale detection of differential conservation patterns at protein and sub-protein levels with BLUR Audrey Defosset,Arnaud Kress,Yannis Nevers,Raymond Ripp,Julie Thompsonet al. Genome Biology and Evolution, 2020, ⟨10.1093/gbe/evaa248⟩ Article dans une revue hal-03243954v1
Optimality of circular codes versus the genetic code after frameshift errors Julie D. Thompson,Gopal Dila,Christian Michel BioSystems, 2020, 195, pp.104134. ⟨10.1016/j.biosystems.2020.104134⟩ Article dans une revue hal-03464223v1
MISTIC: A prediction tool to reveal disease-relevant deleterious missense variants Kirsley Chennen,Thomas Weber,Xavière Lornage,Arnaud Kress,Johann Böhmet al. PLoS ONE, 2020, 15 (7), pp.e0236962. ⟨10.1371/journal.pone.0236962⟩ Article dans une revue inserm-02916951v1
Identification of a circular code periodicity in the bacterial ribosome: origin of codon periodicity in genes? Christian J. Michel,Julie Thompson RNA Biology, 2020, 17 (4), pp.571-583. ⟨10.1080/15476286.2020.1719311⟩ Article dans une revue hal-03078903v1
OrthoInspector 3.0: open portal for comparative genomics Yannis Nevers,Arnaud Kress,Audrey Defosset,Raymond Ripp,Benjamin Linardet al. Nucleic Acids Research, 2019, 47 (D1), pp.D411-D418. ⟨10.1093/nar/gky1068⟩ Article dans une revue hal-01984857v1
Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes Gopal Dila,Christian Michel,Olivier Poch,Raymond Ripp,Julie D Thompson BioSystems, 2019, 175, pp.57-74. ⟨10.1016/j.biosystems.2018.10.014⟩ Article dans une revue hal-02381474v1
Circular code motifs in the ribosome: a missing link in the evolution of translation? Gopal Dila,Raymond Ripp,Claudine Mayer,Olivier Poch,Christian Michelet al. RNA, 2019, 25 (12), pp.1714-1730. ⟨10.1261/rna.072074.119⟩ Article dans une revue hal-02381481v1
BNO: An ontology for understanding the transittability of complex biomolecular networks François de Bertrand de Beuvron,Ali Ayadi,Cecilia Zanni-Merk,François de Bertrand de Beuvron,Julie Thompsonet al. Journal of Web Semantics, 2019, 57, pp.100495. ⟨10.1016/j.websem.2019.01.002⟩ Article dans une revue hal-02045054v1
Loss of Sarcomeric Scaffolding as a Common Baseline Histopathologic Lesion in Titin-Related Myopathies Rainiero Ávila-Polo,Edoardo Malfatti,Xavière Lornage,Chrystel Cheraud,Isabelle Nelsonet al. Journal of Neuropathology and Experimental Neurology, 2018, 77 (12), pp.1101-1114. ⟨10.1093/jnen/nly095⟩ Article dans une revue hal-02332968v1
Novel SPEG Mutations in Congenital Myopathy without Centralized Nuclei Xavière Lornage,Pascal Sabouraud,Béatrice Lannes,Dominique Gaillard,Raphael Schneideret al. Journal of Neuromuscular Diseases, 2018, 5 (2), pp.257-260. ⟨10.3233/jnd-170265⟩ Article dans une revue hal-03664348v1
PROBE: analysis and visualization of protein block-level evolution Arnaud Kress,Odile Lecompte,Olivier Poch,Julie Thompson Bioinformatics, 2018, 34 (19), pp.3390-3392. ⟨10.1093/bioinformatics/bty367⟩ Article dans une revue hal-05490628v1
MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers Alexis Allot,Kirsley Chennen,Yannis Nevers,Laetitia Poidevin,Arnaud Kresset al. Journal of Medical Internet Research, 2017, 19 (6), pp.e212. ⟨10.2196/jmir.6676⟩ Article dans une revue hal-05494375v1
HSPB8 haploinsufficiency causes dominant adult-onset axial and distal myopathy Yon Andoni Echaniz-Laguna,Xavière Lornage,Beatrice Lannes,Raphael Schneider,Guillaume Bierryet al. Acta Neuropathologica, 2017, 134 (1), pp.163-165. ⟨10.1007/s00401-017-1724-8⟩ Article dans une revue hal-03677795v1
Enrichment of Circular Code Motifs in the Genes of the Yeast Saccharomyces cerevisiae Christian J Michel,Viviane Nguefack Ngoune,Olivier Poch,Raymond Ripp,Julie Thompson Life, 2017, 7 (4), pp.52. ⟨10.3390/life7040052⟩ Article dans une revue hal-05488466v1
Common and variable clinical, histological, and imaging findings of recessive RYR1-related centronuclear myopathy patients Osorio Abath Neto,Cristiane de Araujo Martins Moreno,Edoardo Malfatti,Sandra Donkervoort,Johann Bohmet al. Neuromuscular Disorders, 2017, 27 (11), pp.975-985. ⟨10.1016/j.nmd.2017.05.016⟩ Article dans une revue hal-01741730v1
Insights into ciliary genes and evolution from multi-level phylogenetic profiling Yannis Nevers,Megana Prasad,Laetitia Poidevin,Kirsley Chennen,Alexis Allotet al. Molecular Biology and Evolution, 2017, 34 (8), pp.2016-2034. ⟨10.1093/molbev/msx146⟩ Article dans une revue hal-03618033v1
Recessive MYPN mutations cause cap myopathy with occasional nemaline rods Xavière Lornage,Edoardo Malfatti,Raphael Schneider,Valerie Biancalana,Jean Cuissetet al. Ann Neurol, 2017, 81 (3), pp.467-473. ⟨10.1002/ana.24900⟩ Article dans une revue hal-03680439v1
Dihydropyridine receptor (DHPR, CACNA1S) congenital myopathy Vanessa Schartner,Norma Romero,Sandra Donkervoort,Susan Treves,Pinki Munotet al. Acta Neuropathologica, 2017, 133 (4), pp.517-533. ⟨10.1007/s00401-016-1656-8⟩ Article dans une revue hal-03676425v1
LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system Renaud Vanhoutreve,Arnaud Kress,Baptiste Legrand,Hélène Gass,Olivier Pochet al. BMC Bioinformatics, 2016, 17 (1), pp.271. ⟨10.1186/s12859-016-1146-y⟩ Article dans une revue hal-05398736v1
OrthoInspector 2.0: Software and database updates Benjamin Linard,Alexis Allot,Raphaël Schneider,Can Morel,Raymond Rippet al. Bioinformatics, 2015, 31 (3), pp.447-448. ⟨10.1093/bioinformatics/btu642⟩ Article dans une revue hal-01636893v1
A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i). Carlos Bermejo-Das-Neves,Hoan-Ngoc Nguyen,Olivier Poch,Julie Thompson BMC Bioinformatics, 2014, 15 (1), pp.111. ⟨10.1186/1471-2105-15-111⟩ Article dans une revue inserm-00988598v1
Functional insights into the core-TFIIH from a comparative survey Florence Bedez,Benjamin Linard,Xavier Brochet,Raymond Ripp,Julie D. Thompsonet al. Genomics, 2013, 101 (3), pp.178-186. ⟨10.1016/j.ygeno.2012.11.003⟩ Article dans une revue hal-01636894v1
Controversies in modern evolutionary biology: the imperative for error detection and quality control. Francisco Prosdocimi,Benjamin Linard,Pierre Pontarotti,Olivier Poch,Julie Thompson BMC Genomics, 2012, 13 (1), pp.5. ⟨10.1186/1471-2164-13-5⟩ Article dans une revue inserm-00682055v1
MSV3d: database of human MisSense variants mapped to 3D protein structure Tien-Dao Luu,Alin-Mihai Rusu,Vincent Walter,Raymond Ripp,Luc Moulinieret al. Database - The journal of Biological Databases and Curation, 2012, 2012, pp.bas018-bas018. ⟨10.1093/database/bas018⟩ Article dans une revue hal-04975986v1
The chordate proteome history database. Anthony Levasseur,Julien Paganini,Jacques Dainat,Julie D Thompson,Olivier Pochet al. Evolutionary Bioinformatics, 2012, 8, pp.437-47. ⟨10.4137/EBO.S9186⟩ Article dans une revue hal-00831115v1
Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism. Johan-Owen de Craene,Raymond Ripp,Odile Lecompte,Julie D. Thompson,Olivier Pochet al. BMC Genomics, 2012, 13 (1), pp.297. ⟨10.1186/1471-2164-13-297⟩ Article dans une revue inserm-00742840v1
EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data Benjamin Linard,Ngoc Hoan Nguyen,Francisco Prosdocimi,Olivier Poch,Julie D. Thompson Evolutionary Bioinformatics, 2012, 8, pp.61-77. ⟨10.4137/EBO.S8814⟩ Article dans une revue hal-01636866v1
KD4v: comprehensible knowledge discovery system for missense variant Tien-Dao Luu,Alin Rusu,Vincent Walter,Benjamin Linard,Laetitia Poidevinet al. Nucleic Acids Research, 2012, 40 (W1), pp.W71-W75. ⟨10.1093/nar/gks474⟩ Article dans une revue hal-01636871v1
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives Julie D. Thompson,Benjamin Linard,Odile Lecompte,Olivier Poch PLoS ONE, 2011, 6 (3), pp.18093 - 18093. ⟨10.1371/journal.pone.0018093⟩ Article dans une revue hal-01636867v1
OrthoInspector: comprehensive orthology analysis and visual exploration. Benjamin Linard,Julie Thompson,Olivier Poch,Odile Lecompte BMC Bioinformatics, 2011, 12 (1), pp.11. ⟨10.1186/1471-2105-12-11⟩ Article dans une revue inserm-00663697v1
Identifying single copy orthologs in Metazoa. Christopher J. Creevey,Jean Muller,Tobias Doerks,Julie D. Thompson,Detlev Arendtet al. PLoS Computational Biology, 2011, 7 (12), pp.e1002269. ⟨10.1371/journal.pcbi.1002269⟩ Article dans une revue inserm-00691543v1
AlexSys: a knowledge-based expert system for multiple sequence alignment construction and analysis Mohamed Radhouene Aniba,Olivier Poch,Aron Marchler-Bauer,Julie Thompson Nucleic Acids Research, 2010, 38 (19), pp.6338-6349. ⟨10.1093/nar/gkq526⟩ Article dans une revue hal-04010699v1
Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases. Krishanpal Anamika,Arnaud R Krebs,Julie Thompson,Olivier Poch,Didier Devyset al. Epigenetics & Chromatin, 2010, 3 (1), pp.18. ⟨10.1186/1756-8935-3-18⟩ Article dans une revue inserm-00663877v1
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment Mohamed Radhouene Aniba,Olivier Poch,Julie Thompson Nucleic Acids Research, 2010, 38 (21), pp.7353-7363. ⟨10.1093/nar/gkq625⟩ Article dans une revue hal-04029377v1
Visualization of multiple alignments, phylogenies and gene family evolution. James B Procter,Julie D. Thompson,Ivica Letunic,Chris Creevey,Fabrice Jossinetet al. Nature Methods, 2010, 7 (3 Suppl), pp.S16-25. ⟨10.1038/nmeth.1434⟩ Article dans une revue hal-00530522v1
Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis. Mohamed Radhouene Aniba,Sophie Siguenza,Anne Friedrich,Frédéric Plewniak,Olivier Pochet al. Briefings in Bioinformatics, 2009, 10 (1), pp.11-23. ⟨10.1093/bib/bbn045⟩ Article dans une revue inserm-00370108v1
PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees. Philippe Gouret,Julie Thompson,Pierre Pontarotti BMC Bioinformatics, 2009, 10 (1), pp.298. ⟨10.1186/1471-2105-10-298⟩ Article dans une revue inserm-00663932v1
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. Valentín Ruano-Rubio,Olivier Poch,Julie Thompson BMC Bioinformatics, 2009, 10 (1), pp.383. ⟨10.1186/1471-2105-10-383⟩ Article dans une revue inserm-00663560v1
Initial implementation of a comparative data analysis ontology. Francisco Prosdocimi,Brandon Chisham,Enrico Pontelli,Julie D. Thompson,Arlin Stoltzfus Evolutionary Bioinformatics, 2009, 5, pp.47-66 Article dans une revue inserm-00438663v1
Strategies for reliable exploitation of evolutionary concepts in high throughput biology. Anthony Levasseur,Pierre Pontarotti,Olivier Poch,Julie D. Thompson Evolutionary Bioinformatics, 2008, 4, pp.121-37 Article dans une revue inserm-00368022v1
Strategies for reliable exploitation of evolutionary concepts in high throughput biology Anthony Levasseur,Pierre Pontarotti,Olivier Poch,Julie D. Thompson Evolutionary Bioinformatics, 2008, 4, pp.121-137. ⟨10.4137/ebo.s597⟩ Article dans une revue hal-04127572v1
A new protein linear motif benchmark for multiple sequence alignment software. Emmanuel Perrodou,Claudia Chica,Olivier Poch,Toby J Gibson,Julie D Thompson BMC Bioinformatics, 2008, 9, pp.213. ⟨10.1186/1471-2105-9-213⟩ Article dans une revue hal-00283115v1
MACSIMS: multiple alignment of complete sequences information management system. Julie D Thompson,Arnaud H. Muller,Andrew Waterhouse,Jim Procter,Geoffrey J Bartonet al. BMC Bioinformatics, 2006, 7, pp.318. ⟨10.1186/1471-2105-7-318⟩ Article dans une revue hal-00188166v1
Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis Andra Waagmeester,Julie D. Thompson,Jean-Marc Reyrat Trends in Microbiology, 2005, 13 (11), pp.505-509. ⟨10.1016/j.tim.2005.08.009⟩ Article dans une revue istex hal-00187813v1
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Julie D Thompson,Patrice Koehl,Raymond Ripp,Olivier Poch Proteins - Structure, Function and Bioinformatics, 2005, 61 (1), pp.127-36. ⟨10.1002/prot.20527⟩ Article dans une revue istex hal-00187785v1
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. Julie D Thompson,Stephen R Holbrook,Kazutaka Katoh,Patrice Koehl,Dino Moraset al. Nucleic Acids Research, 2005, 33 (13), pp.4164-71. ⟨10.1093/nar/gki735⟩ Article dans une revue hal-00187784v1
vALId: validation of protein sequence quality based on multiple alignment data. Laurent Bianchetti,Julie Dawn Thompson,Odile Lecompte,Frederic Plewniak,Olivier Poch Journal of Bioinformatics and Computational Biology, 2005, 3 (4), pp.929-47 Article dans une revue hal-00187446v1
vALId: validation of protein sequence quality based on multiple alignment data Laurent Bianchetti,Julie Thompson,Odile Lecompte,Frederic Plewniak,Olivier Poch Journal of Bioinformatics and Computational Biology, 2005, 3 (4), pp.929-947. ⟨10.1142/s0219720005001326⟩ Article dans une revue hal-04143695v1
LEON: multiple aLignment Evaluation Of Neighbours Julie D. Thompson,Véronique Prigent,Olivier Poch Nucleic Acids Research, 2004, 32 (4), pp.1298-1307. ⟨10.1093/nar/gkh294⟩ Article dans une revue hal-04542667v1
RASCAL: rapid scanning and correction of multiple sequence alignments Julie Thompson,J. C. Thierry,Olivier Poch Bioinformatics, 2003, 19 (9), pp.1155-1161. ⟨10.1093/bioinformatics/btg133⟩ Article dans une revue hal-04151457v1
PipeAlign: A new toolkit for protein family analysis Frederic Plewniak,Laurent Bianchetti,Yann Brelivet,Annaick Carles,Frédéric Chalmelet al. Nucleic Acids Research, 2003, 31 (13), pp.3829-3832. ⟨10.1093/nar/gkg518⟩ Article dans une revue hal-04156292v1
Towards a reliable objective function for multiple sequence alignments Julie Thompson,Frédéric Plewniak,Raymond Ripp,Jean-Claude Thierry,Olivier Poch Journal of Molecular Biology, 2001, 314 (4), pp.937-951. ⟨10.1006/jmbi.2001.5187⟩ Article dans une revue istex hal-04128945v1
Multiple alignment of complete sequences (MACS) in the post-genomic era Odile Lecompte,Julie Thompson,Frederic Plewniak,Jean-Claude Thierry,Olivier Poch Gene, 2001, 270 (1-2), pp.17-30. ⟨10.1016/s0378-1119(01)00461-9⟩ Article dans une revue istex hal-04107023v1
A comprehensive comparison of multiple sequence alignment programs Julie D Thompson,Frederic Plewniak,Olivier Poch Nucleic Acids Research, 1999, 27 (13), pp.2682-2690. ⟨10.1093/nar/27.13.2682⟩ Article dans une revue hal-03989698v1
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs Julie Thompson,Frederic Plewniak,Olivier Poch Bioinformatics, 1999, 15 (1), pp.87-88. ⟨10.1093/bioinformatics/15.1.87⟩ Article dans une revue hal-03991584v1

Communication dans un congrès (8)

Apprentissage automatique basé sur l’agrégation pour la prédiction de liens dans les réseaux d’interactions protéine-protéine Hajer Akid,Kirsley Chennen,Gabriel Frey,Julie Thompson,Mounir Ben Ayedet al. 22ième Conférence Extraction et Gestion des Connaissances (EGC'22), 24-28 janvier 2022, Tours, Jan 2020, Tours, France Communication dans un congrès hal-03797657v1
MERLIN: Identifying inaccuracies in Multiple Sequence Alignments using Object Detection Hiba Khodji,Lucille Herbay,Pierre Collet,Julie D. Thompson,Anne Jeannin-Girardon 18th IFIP International Conference on Artificial Intelligence Applications and Innovations (AIAI), Jun 2022, Hersonissos, Greece. pp.192-203, ⟨10.1007/978-3-031-08333-4_16⟩ Communication dans un congrès hal-04317586v3
Multi-level phylogenetic profiling with BLUR Audrey Defosset,Arnaud Kress,Yannis Nevers,Raymond Ripp,Julie Thompsonet al. The 67th NIBB Conference / The 6th QfO meeting, Jul 2019, Ikazaki, Japan Communication dans un congrès hal-05496304v1
INEX-MED: a Knowledge Graph to explore and link heterogeneous bio-medical data Maxime Folschette,Kirsley Chennen,Alban Gaignard,Richard Redon,Hala Skaf-Molliet al. JOBIM 2019, Jul 2019, Nantes, France Communication dans un congrès hal-02330809v1
Investigating evolutionary history with OrthoInspector 3.0 Yannis Nevers,Audrey Defosset,Arnaud Kress,Raymond Ripp,Benjamin Linardet al. The 67th NIBB Conference / The 6th QfO meeting, Jul 2019, Okazaki, Japan Communication dans un congrès hal-05496345v1
MEMSA: a robust Parisian EA for multidimensional multiple sequence alignment Julie Thompson,Renaud Vanhoutreve,Pierre Collet Evolution Artificielle 2017, Oct 2017, Paris, France Communication dans un congrès hal-05496309v1
GeneBook: a social network linking genes, diseases and researchers A. Allot,Laetitia Poidevin,Kirsley Chennen,Raymond Ripp,Julie Dawn Thompsonet al. European Conference on Computational Biology (ECCB'14), Sep 2014, Strasbourg, France Communication dans un congrès hal-05403465v1
Classification multi-étiquettes pour l'alignement multiple de séquences protéiques Lina Fahed,Gabriel Frey,Julie Dawn Thompson,Nicolas Lachiche Extraction et gestion des connaissances (EGC'2013), Jan 2013, Toulouse, France. pp.431--436 Communication dans un congrès hal-03204153v1

Poster de conférence (2)

INEX-MED: INtegration and EXploration of heterogeneous bio-MEDical data Alban Gaignard,Julie D. Thompson,Kirsley Chennen,Maxime Folschette,Jocelyn Laporteet al. JOBIM 2019, Jul 2019, Nantes, France Poster de conférence hal-02330853v1
Prediction and characterization of ciliary proteins by comparative genomics Yannis Nevers,Megana Prasad,Laetitia Poidevin,Kirsley Chennen,Alexis Allotet al. Evolutionary Biology Meeting, Marseille, France, septembre 2016, 2016, Marseille, France. 2016 Poster de conférence hal-04792187v1

Pré-publication, Document de travail (1)

EvoKEN: evolutionary knowledge extraction in networks Benjamin Linard,Ngoc Thanh Nguyen,Odile Lecompte,Olivier Poch,Julie D. Thompson 2017 Pré-publication, Document de travail hal-01636898v1

Ouvrages (1)

Statistics for Bioinformatics: Methods for Multiple Sequence Alignment Julie Thompson ISTE Press, 2016, 978-1-78548-216-8 Ouvrages hal-05513897v1

Chapitre d'ouvrage (2)

Motif Discovery in Protein Sequences Salma Aouled El Haj,Mourad Elloumi,Julie Thompson Srinivasan Ramakrishnan. Pattern Recognition - Analysis and Applications, InTech, 2016, 978-953-51-2804-5. ⟨10.5772/65441⟩ Chapitre d'ouvrage hal-05473326v1
Intelligent Integrative Knowledge Bases: Bridging Genomics, Integrative Biology and Translational Medicine Hoan Nguyen,Julie Thompson,Patrick Schutz,Olivier Poch Lecture Notes in Computer Science. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 8401, Springer Link; Springer Berlin Heidelberg, pp.255--270, 2014, Lecture Notes in Computer Science, 978-3-662-43968-5. ⟨10.1007/978-3-662-43968-5_15⟩ Chapitre d'ouvrage hal-05279400v1