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Julien Bobe

34
Documents
Affiliations actuelles
  • 1002344
Identifiants chercheurs

Présentation

**Current position**. Research Director (DR1) and director of the Fish Physiology and Genomics laboratory. **Employment history** \- - Ph.D. University of Rennes I (April 2001). \- - Habilitation à Diriger les Recherches, University of Rennes I (March 2009). \- - Visiting research student in Pr. FW Goetz Laboratory. 1998-2000 (Univ. Notre Dame, USA). \- - INRAE Research Scientist. 2001-2009 (SCRIBE Laboratory). \- - INRAE Research Director and group leader. 2010-2015 (Fish Physiology and Genomics Laboratory) \- Director of INRAE fish physiology and genomics laboratory (since 2016)

Publications

violette-thermes
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Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Fernanda de Mello , Thuy Thao Vi Nguyen
Nucleic Acids Research, 2024, 52 (2), pp.738-754. ⟨10.1093/nar/gkad1154⟩
Article dans une revue hal-04501492v1
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Deciphering sex-specific miRNAs as heat-recorders in zebrafish

Tosca A van Gelderen , Jérôme Montfort , José Antonio Álvarez-Dios , Violette Thermes , Francesc Piferrer
Scientific Reports, 2022, 12, pp.18722. ⟨10.1038/s41598-022-21864-3⟩
Article dans une revue hal-03886962v1
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A Comparison of Reproductive Performances in Young and Old Females: A Case Study on the Atlantic Bluefin Tuna in the Mediterranean Sea

Luca Marisaldi , Orsola Iorillo , Danilo Basili , Giorgia Gioacchini , Julien Bobe
Animals, 2021, 11, ⟨10.3390/ani11123340⟩
Article dans une revue hal-03448300v1

C-ECi: a CUBIC-ECi combined clearing method for three-dimensional follicular content analysis in the fish ovary

Manon Lesage , Manon Thomas , Jérôme Bugeon , Adèle Branthonne , Stéphanie Gay
Biology of Reproduction, 2020, 103 (5), pp.1099-1109. ⟨10.1093/biolre/ioaa142⟩
Article dans une revue hal-02935099v1
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MiR-202 controls female fecundity by regulating medaka oogenesis

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye
PLoS Genetics, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩
Article dans une revue hal-01871468v1
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Genes involved in Drosophila melanogaster ovarian function are highly conserved throughout evolution

Sébastien Elis , Alice Desmarchais , Emilie Cardona , Sophie Fouchécourt , Rozenn Dalbies-Tran
Genome Biology and Evolution, 2018, 10 (10), pp.2629-2642. ⟨10.1093/gbe/evy158⟩
Article dans une revue hal-01991460v1
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Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
Scientific Reports, 2017, 7 (1), pp.1-11. ⟨10.1038/srep40241⟩
Article dans une revue hal-01594581v1
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Quantitative analysis of asynchronous oogenesis dynamics in fish: Application of a modern 3D analysis approach to an old problem

Manon Lesage , Mak Sully , Jérôme Bugeon , Manon Thomas , Stéphanie Gay
12. International Symposium on Reproductive Physiology of Fish (ISRPF), May 2023, Chersonissos, Greece
Communication dans un congrès hal-04187726v1

Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Martin Pšenička , Fernanda de Mello
12. International Symposium on Reproductive Physiology of Fish, May 2023, Chersonissos, Greece
Communication dans un congrès hal-04210922v1

A comprehensive 3D approach to unravel follicular growth dynamics that governs fecundity in medaka fish (Oryzias latipes)

Manon Lesage , Jérôme Bugeon , Manon Thomas , Stéphanie Gay , Thierry Pécot
14. International Congress on the Biology of Fish, Jun 2022, Montpellier, France
Communication dans un congrès hal-03764407v1

Hippo pathway-mediated regulation of micropyle formation by micro RNA 202 (miR-202) in the fish oocyte

Mariana Roza de Abreu , Sarah JANATI IDRISSI , Fernanda de Mello , Cervin Guyomar , Thuy Thao Vi Nguyen
8. International Workshop on the Biology of Fish Gametes, Sep 2022, Gdansk, Poland
Communication dans un congrès hal-04211036v1

What makes a good egg: new insights from CRISPR/Cas9 genome editing in fish model species

Caroline Cheung , Thuy Thao Vi Nguyen , Stéphanie Gay , Amélie Patinote , Emilie Cardona
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.71-72
Communication dans un congrès hal-02282328v1

What makes a fish egg able to be fertilized and subsequently develop into an embryo: new insights from CRISPR/Cas9 genome editing in model species

Caroline Cheung , Thuy Thao Vi Nguyen , Stéphanie Gay , Amélie Patinote , Emilie Cardona
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Communication dans un congrès hal-02284510v1

MiR-202 knock-out in medaka drastically impairs female fertility

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Julien Bobe
10. European Zebrafish Meeting, Jul 2017, Budapest, Hungary
Communication dans un congrès hal-01603044v1

Mir-202 knock-out in medaka drastically impairs female fertility

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Julien Bobe
2. Journées scientifiques GDR 3606 REPRO : ReproSciences 2017, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2017, Tours, France
Communication dans un congrès hal-01594638v1

Maternal-effect genes and egg quality: usual suspects and new players

Julien Bobe , Violette Thermes
6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p
Communication dans un congrès hal-01595100v1
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What makes a good egg ? Molecular mechanisms defining egg developmental competence in teleost fish

Julien Bobe , Aurélien Bouleau , Caroline Cheung , Ozlem Yilmaz , Thuy Thao Vi Nguyen
1. Journées du GdR 3606 Repro, Université de Rennes 1 (UR1). Rennes, FRA., Apr 2015, Rennes, France. 105 p
Communication dans un congrès hal-01897087v1

Analyzing microrna repertoires in eggs from 4 fish species can reveal secrets of both life history traits and embryo viability/quality

Amélie A. Juanchich , Kai Ove Skaftnesmo , Violette Thermes , Julien Bobe , Anna Wargelius
5. International Workshop on the Biology of Fish Gametes, Università Politecnica delle Marche. ITA., Sep 2015, Ancona, Italy. 290 p
Communication dans un congrès hal-02740533v1
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Identification of novel ovarian predominant MiRNAs in medaka

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
9. European Zebrafish Meeting, Jun 2015, Oslo, Norway
Communication dans un congrès hal-02742954v1

Monitoring the Oogenesis Dynamics in the Medaka Ovary Using a Quantitative 3D Image Analysis Approach

Manon Lesage , Mak Sully , Manon Thomas , Stéphanie Gay , Thierry Pécot
12. European Zebrafish Meeting, Jul 2023, Krakow, Poland
Poster de conférence hal-04187761v1

Développement d'une nouvelle méthode pour l'analyse 3D de la dynamique ovarienne chez le poisson : Transparisation, microscopie, analyse d'image et modélisation

Manon Thomas , Stéphanie Gay , Jérôme Bugeon , Marie Haghebaert , Fabrice Mahé
Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés
Poster de conférence hal-02735123v1

Characterization of micropyle formation in medaka (Oryzias latipes) miR-202 -/- mutants

Mariana Roza de Abreu , Manon Lesage , Stéphanie Gay , Thuy Thao Vi Nguyen , Cécile Duret
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.155-156, 2019
Poster de conférence hal-02282254v1

Identification and functional characterization of ovarian and maternally-inherited miRNAs in medaka

Stéphanie Gay , Jérôme Montfort , Fabrice Legeai , Thuy Thao Vi Nguyen , Thomas Desvignes
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.153-153, 2019
Poster de conférence hal-02282325v1
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MiR-202 regulates female fecundity by controlling early follicle development in medaka ovary

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye
11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment
Poster de conférence hal-02437626v1

miR-202, un microARN clé pour le succès reproducteur des femelles chez le poisson médaka

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Jérôme Montfort
Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. , 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés
Poster de conférence hal-01771815v1

Effect of food restriction on reproductive performances and egg quality in the trout Oncorhynchus mykiss

Emilie Cardona , Jérôme Bugeon , Violette Thermes , Violaine Colson , Sandrine Skiba
6. International Workshop on the Biology of Fish Gametes, Sep 2017, Vodnany, Czech Republic. University of South Bohemia in Ceske Budejovice ; Faculty of Fisheries and Protection of Waters, 1st, 156 p., 2017, 6. International Workshop on the Biology of Fish Gametes
Poster de conférence hal-01595634v1

Analyse expressionnelle et fonctionnelle des microRNAs dans la physiologie du poisson (MicroFish)

Amélie Juanchich , Stéphanie Gay , Amine Bouchareb , Jean-Charles Gabillard , Yann Guiguen
Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. , 115 p., 2016, Crédits incitatifs financés entre 2011 et 2014
Poster de conférence hal-02741924v1

Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
49. Annual Meeting of the Society for the Study of Reproduction, Jul 2016, San Diego, California, United States. , 405 p., 2016, SSR 2016 Systems Biology of Reproduction
Poster de conférence hal-02742929v1

Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
10. Meeting SifrARN, Mar 2016, Toulouse, France. , 2016, SifrARN 2016
Poster de conférence hal-02742939v1

Inactivation of miR202 after targeting its 3' genomic region using the CRISPR/Cas9 technology

Amine Bouchareb , Stéphanie Gay , Julien Bobe , Violette Thermes
10. Meeting SifrARN, Mar 2016, Toulouse, France. , 2016, SifrARN 2016
Poster de conférence hal-02742891v1

Maternal RNAs, fish and amphibians

Caroline Cheung , Julien Bobe , Violette Thermes
Encyclopedia of Reproduction, Volume 6: Comparative Reproduction (2ème ed.), Elsevier, Academic Press, 2018, 978-0-12-815145-7. ⟨10.1016/B978-0-12-809633-8.20566-9⟩
Chapitre d'ouvrage hal-02791192v1