Julien Mozziconacci

Publications

Chapitre d'ouvrage (1)

Spatial reconstruction from contact networks: A unified approach for dynamics and genomics Annick Lesne,Julien Mozziconnacci,Sofiane Ramdani Y. Hirata, M. Shiro, M. Fukino, C. L. Webber Jr, K. Aihara and N. Marwan. Recurrence Plots and Their Quantifications: Methodological Breakthroughs and Interdisciplinary Discoveries, pp.131-146, 2025, Springer Proceedings in Complexity Chapitre d'ouvrage hal-04636019v1

Poster de conférence (4)

Interpretable deep learning reveals sequence determinants of nucleosome positioning in mouse genome Maxime Christophe,Luis Altamirano-Pacheco,Pablo Navarro,Julien Mozziconacci ISMB/ECCB 2025, Jul 2025, Liverpool, United Kingdom Poster de conférence hal-05285046v1
Nucleosome positioning in yeast: from prediction to synthetic design Alex Westbrook,Etienne Routhier,Julien Mozziconacci,Romain Koszul,Jean-Baptiste Boulé Journées du GDR BIM, Nov 2023, Villeneuve d'Ascq (Lille 3), France Poster de conférence mnhn-04344672v1
Nanomanipulation of single chromatin fiber with magnetic tweezers Aurélien Bancaud,Gaudeline Wagner,Natalia Conde e Silva,Pierre Recouvreux,Christophe Lavelleet al. 6th European Biophysics Congress, 2007, Londres, United Kingdom Poster de conférence hal-04339183v1
Torsional manipulation of single chromatin fibers reveals a highly flexible structure Aurélien Bancaud,Gaudeline Wagner,Natalia Conde e Silva,Maria Barbi,J.-F. Allemandet al. European Biophysical Society Meeting, 2005, Montpellier, France Poster de conférence hal-04345467v1

Pré-publication, Document de travail (5)

Criticality-driven enhancer-promoter dynamics in Drosophila chromosomes Gautham Ganesh,Jean-Bernard Fiche,Marcelo Nöllmann,Julien Mozziconacci 2025 Pré-publication, Document de travail hal-05358669v1
Unique territorial and compartmental organization of chromosomes in the holocentric silkmoth José Gil,Emily Navarrete,L.F. Rosin,Neil Chowdhury,Sameer Abrahamet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04658951v1
A layer cake model for plant and metazoan chromatin Léoplod Carron,Lorenzo Concia,Stefan Grob,Fredy Barneche,Alessandra Carboneet al. 2023 Pré-publication, Document de travail hal-04281570v1
Transcriptional units form the elementary constraining building blocks of the bacterial chromosome Amaury Bignaud,Charlotte Cockram,Eric Allemand,Julien Mozziconnacci,Olivier Espeliet al. 2022 Pré-publication, Document de travail hal-03829270v1
Exogenous chromosomes reveal how sequence composition drives chromatin assembly, activity, folding and compartmentalization Christophe Chapard,Léa Meneu,Jacques Serizay,Alex Westbrook,Etienne Routhieret al. 2023 Pré-publication, Document de travail hal-04278801v1

Article dans une revue (30)

Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus Léa Meneu,Christophe Chapard,Jacques Serizay,Alex Westbrook,Etienne Routhieret al. Science, 2025, 387 (6734), pp.eadm9466. ⟨10.1126/science.adm9466⟩ Article dans une revue hal-04937691v1
The 3D organization of chromatin colors in mammalian nuclei Leopold Carron,Jean-Baptiste Morlot,Annick Lesne,Julien Mozziconacci Methods in Molecular Biology, 2022, 2301, pp. 317-336. ⟨10.1007/978-1-0716-1390-0_17⟩ Article dans une revue hal-03172656v1
Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts Luciana Lazar-Stefanita,Jingchuan Luo,Remi Montagne,Agnes Thierry,Xiaoji Sunet al. Cell Genomics, 2022, 2 (8), pp.100163. ⟨10.1016/j.xgen.2022.100163⟩ Article dans une revue hal-03930009v1
Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae Astrid Lancrey,Alexandra Joubert,Evelyne Duvernois-Berthet,Etienne Routhier,Saurabh Rajet al. Journal of Molecular Biology, 2022, 434 (7), pp.167497. ⟨10.1016/j.jmb.2022.167497⟩ Article dans une revue hal-03343705v2
Genomics enters the deep learning era Etienne Routhier,Julien Mozziconacci PeerJ, 2022, 10, pp.e13613. ⟨10.7717/peerj.13613⟩ Article dans une revue hal-03930029v1
Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics Etienne Routhier,Edgard Pierre,Ghazaleh Khodabandelou,Julien Mozziconacci Genome Research, 2021, 31 (2), pp.317-326. ⟨10.1101/gr.264416.120⟩ Article dans une revue hal-03158738v1
MNHN-Tree-Tools: A toolbox for tree inference using multi-scale clustering of a set of sequences Thomas Haschka,Loic Ponger,Christophe Escude,Julien Mozziconacci Bioinformatics, 2021, ⟨10.1093/bioinformatics/btab430⟩ Article dans une revue hal-03451406v1
Improving distance measures between genomic tracks with mutual proximity Thomas Haschka,Jean Baptiste Morlot,Leopold Carron,Julien Mozziconacci Briefings in Bioinformatics, 2021, ⟨10.1093/bib/bbab266⟩ Article dans une revue hal-03335513v1
The 3D genome shapes the regulatory code of developmental genes Julien Mozziconacci,Mélody Merle,Annick Lesne Journal of Molecular Biology, 2020, 432 (3), pp.712-723. ⟨10.1016/j.jmb.2019.10.017⟩ Article dans une revue hal-02357466v2
Distributed under Creative Commons CC-BY 4.0 Genome annotation across species using deep convolutional neural networks Ghazaleh Khodabandelou,Etienne Routhier,Julien Mozziconacci PeerJ Computer Science, 2020, 6, pp.e278. ⟨10.7717/peerj-cs.278⟩ Article dans une revue hal-02883334v1
Chromosomes : étonnants polymères ! Maria Barbi,Annick Lesne,Julien Mozziconacci,Jean-Marc Victor Reflets de la Physique, 2018, 57, pp.10-15. ⟨10.1051/refdp/201857010⟩ Article dans une revue hal-03518411v1
Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer Vittore F Scolari,Guillaume Mercy,Romain Koszul,Annick Lesne,Julien Mozziconacci Physical Review Letters, 2018, 121 (5), pp.057801. ⟨10.1103/PhysRevLett.121.057801⟩ Article dans une revue hal-01992814v1
Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C Héloise Muller,Vittore F Scolari,Nicolas Agier,Aurele Piazza,Agnès Thierryet al. Molecular Systems Biology, 2018, 14 (7), pp.e8293. ⟨10.15252/msb.20188293⟩ Article dans une revue hal-01890095v1
High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies Marie Baudement,Axel Cournac,Franck Court,Marie Seveno,Hugues Parrinelloet al. Genome Research, 2018, 28 (11), pp.1733 - 1746. ⟨10.1101/gr.237073.118⟩ Article dans une revue hal-01912447v1
P-Body Purification Reveals the Condensation of Repressed mRNA Regulons Arnaud Hubstenberger,Maïté Courel,Marianne Bénard,Sylvie Souquère,Michèle M. Ernoult-Langeet al. Molecular Cell, 2017, 68 (1), pp.144-157.e5. ⟨10.1016/j.molcel.2017.09.003⟩ Article dans une revue hal-02153054v1
Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle Luciana Lazar-Stefanita,Vittore F Scolari,Guillaume Mercy,Héloïse Muller,Thomas M M Guérinet al. EMBO Journal, 2017, 36 (18), pp.2684 - 2697. ⟨10.15252/embj.201797342⟩ Article dans une revue hal-01596511v1
The physics of epigenetics Ruggero Cortini,Maria Barbi,Bertrand Caré,Christophe Lavelle,Annick Lesneet al. Reviews of Modern Physics, 2016, 88 (2), ⟨10.1103/RevModPhys.88.025002⟩ Article dans une revue hal-03510200v1
The 3D folding of metazoan genomes correlates with the association of similar repetitive elements Axel Cournac,Romain Koszul,Julien Mozziconacci Nucleic Acids Research, 2016, 44 (1), pp.245-255. ⟨10.1093/nar/gkv1292⟩ Article dans une revue hal-01294687v1
Network concepts for analyzing 3D genome structure from chromosomal contact maps Jean-Baptiste Morlot,Julien Mozziconacci,Annick Lesne EPJ Nonlinear Biomedical Physics, 2016, 4 (1), ⟨10.1140/epjnbp/s40366-016-0029-5⟩ Article dans une revue hal-03199686v1
Principles of chromatin organization in yeast: relevance of polymer models to describe nuclear organization and dynamics Renjie Wang,Julien Mozziconacci,Aurélien Bancaud,Olivier Gadal Current Opinion in Cell Biology, 2015, 34, pp.54 - 60. ⟨10.1016/j.ceb.2015.04.004⟩ Article dans une revue hal-01682615v1
Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution. Julien Mozziconacci,Romain Koszul Genome Biology, 2015, 16 (1), pp.169. ⟨10.1186/s13059-015-0744-8⟩ Article dans une revue pasteur-01420328v1
DNA topology in chromosomes: a quantitative survey and its physiological implications Maria Barbi,Julien Mozziconacci,Hua Wong,Jean-Marc Victor Journal of Mathematical Biology, 2014, 68 (1-2), pp.145-179. ⟨10.1007/s00285-012-0621-y⟩ Article dans une revue hal-03510117v1
3D genome reconstruction from chromosomal contacts Annick Lesne,Julien Riposo,Paul Roger,Axel Cournac,Julien Mozziconacci Nature Methods, 2014, 11, pp.1141-1143. ⟨10.1038/NMETH.3104⟩ Article dans une revue hal-02324120v1
Systematic characterization of the conformation and dynamics of budding yeast chromosome XII Benjamin Albert,Julien Mathon,Ashutosh Shukla,Hicham Saad,Christophe Normandet al. Journal of Cell Biology, 2013, 202 (2), pp.201-210. ⟨10.1083/jcb.201208186⟩ Article dans une revue hal-01682609v2
Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective Pascal Carrivain,Axel Cournac,Christophe Lavelle,Annick Lesne,Julien Mozziconacciet al. Soft Matter, 2012, 8 (36), pp.9285. ⟨10.1039/C2SM25789K⟩ Article dans une revue hal-03510086v1
Pulling chromatin apart: Unstacking or Unwrapping? Jean-Marc Victor,Jordanka Zlatanova,Maria Barbi,Julien Mozziconacci BMC Biophysics, 2012, 5 (1), ⟨10.1186/2046-1682-5-21⟩ Article dans une revue hal-03510102v1
Normalization of a chromosomal contact map Axel Cournac,Hervé Marie-Nelly,Martial Marbouty,Romain Koszul,Julien Mozziconacci BMC Genomics, 2012, 13 (1), pp.436. ⟨10.1186/1471-2164-13-436⟩ Article dans une revue pasteur-00769663v1
On the topology of chromatin fibres Maria Barbi,Julien Mozziconacci,Jean-Marc Victor,Hua Wong,Christophe Lavelle Interface Focus, 2012, 2 (5), pp.546-554. ⟨10.1098/rsfs.2011.0101⟩ Article dans une revue hal-03510056v1
A physical model for the condensation and decondensation of eukaryotic chromosomes Julien Mozziconacci,Christophe Lavelle,Maria Barbi,Annick Lesne,Jean-Marc Victor FEBS Letters, 2006, 580 (2), pp.368-372. ⟨10.1016/j.febslet.2005.12.053⟩ Article dans une revue hal-03509975v1
Nucleosome gaping supports a functional structure for the 30nm chromatin fiber Julien Mozziconacci,Jean-Marc Victor Journal of Structural Biology, 2003, 143 (1), pp.72-76. ⟨10.1016/s1047-8477(03)00102-3⟩ Article dans une revue hal-03762461v1