Juliette Cooke

Publications

Article dans une revue (5)

Simulated metabolic profiles reveal biases in pathway analysis methods Juliette Cooke,Cecilia Wieder,Nathalie Poupin,Clément Frainay,Timothy Ebbelset al. Metabolomics, 2025, 21 (5), pp.136. ⟨10.1007/s11306-025-02335-y⟩ Article dans une revue hal-05306419v1
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration Cecilia Wieder,Juliette Cooke,Clement Frainay,Nathalie Poupin,Russell Bowleret al. PLoS Computational Biology, 2024, 20 (3), pp.e1011814. ⟨10.1371/journal.pcbi.1011814⟩ Article dans une revue hal-04597222v1
Genome scale metabolic network modelling for metabolic profile predictions Juliette Cooke,Maxime Delmas,Cecilia Wieder,Pablo Rodríguez Mier,Clément Frainayet al. PLoS Computational Biology, 2024, 20 (2), pp.e1011381. ⟨10.1371/journal.pcbi.1011381⟩ Article dans une revue hal-04596969v1
Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics Cecilia Wieder,Jacob Bundy,Clément Frainay,Nathalie Poupin,Pablo Rodríguez-Mieret al. Environmental Science and Technology, In press, ⟨10.1021/acs.est.2c05588⟩ Article dans une revue hal-03799270v1
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis Cecilia Wieder,Clément Frainay,Nathalie Poupin,Pablo Rodríguez-Mier,Florence Vinsonet al. PLoS Computational Biology, 2021, 17 (9), ⟨10.1371/journal.pcbi.1009105⟩ Article dans une revue hal-03344682v1

Poster de conférence (1)

Multi-omics data integration in constraint-based modeling of metabolic networks to study the metabolism of adipose-derived stem cells Maximilian Stingl,Juliette Cooke,Julie Gering,Yannick Jeanson,Agnès Emanset al. JOBIM 2025, Jul 2025, Bordeaux & Online, France. Poster de conférence hal-05181742v1

Thèse (1)

In silico prediction of metabolic profiles for improved biomarker discovery and metabolic phenotyping Juliette Cooke Bioinformatics [q-bio.QM]. Institut National Polytechnique de Toulouse - INPT, 2023. English. ⟨NNT : 2023INPT0137⟩ Thèse tel-04521507v1

Communication dans un congrès (1)

SAMBA, a recommendation system for biomarker discovery using metabolic networks Juliette Cooke,Nathalie Poupin,Maxime Delmas,Clément Frainay,Florence Vinsonet al. 8th Conference on Constraint-Based reconstruction and Analysis (COBRA 2022), Sep 2022, Galway, Ireland Communication dans un congrès hal-03807772v1

Pré-publication, Document de travail (1)

Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis Cecilia Wieder,Clément Frainay,Nathalie Poupin,Pablo Rodríguez-Mier,Florence Vinsonet al. 2021 Pré-publication, Document de travail hal-03240376v1