lars stemmann

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Publications

Lateral inputs sustains subsurface particle export during low productivity in Equatorial Atlantic

Joelle Habib , Lars Stemmann , Ajit Subramaniam , Alberto Baudena , Ana Fernández-Carrera et al.

Research Square - Preprint, In press, ⟨10.21203/rs.3.rs-8935744/v1⟩

Article dans une revue hal-05553428v1
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Intense and localized export of selected marine snow types at eddy edges in the South Atlantic Ocean

Alexandre Accardo , Rémi Laxenaire , Alberto Baudena , Sabrina Speich , Rainer Kiko et al.

Biogeosciences, 2025, 22 (5), pp.1183-1201. ⟨10.5194/bg-22-1183-2025⟩

Article dans une revue hal-04984482v1
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Patterns and drivers of diatom diversity and abundance in the global ocean

Juan Pierella Karlusich , Karen Cosnier , Lucie Zinger , Nicolas Henry , Charlotte Nef et al.

Nature Communications, 2025, 16 (1), pp.3452. ⟨10.1038/s41467-025-58027-7⟩

Article dans une revue hal-05138560v1
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Marine snow morphology drives sinking and attenuation in the ocean interior

Yawouvi Dodji Soviadan , Miriam Beck , Joelle Habib , Alberto Baudena , Laetitia Drago et al.

Biogeosciences, 2025, 22 (14), pp.3485-3501. ⟨10.5194/bg-22-3485-2025⟩

Article dans une revue hal-05171892v1

Marine snow surface production and bathypelagic export at the Equatorial Atlantic from an imaging float

Joelle Habib , Lars Stemmann , Alexandre Accardo , Alberto Baudena , Franz Philip Tuchen et al.

Biogeosciences, In press, 22 (24), pp.7985-8003. ⟨10.5194/bg-22-7985-2025⟩

Article dans une revue hal-05553425v1
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A Lagrangian perspective reveals the carbon and oxygen budget of an oceanic eddy

Alberto Baudena , Rémi Laxenaire , Camille Catalano , Artemis Ioannou , Edouard Leymarie et al.

Communications Earth & Environment, 2025, 6 (1), pp.318. ⟨10.1038/s43247-025-02262-9⟩

Article dans une revue hal-05046172v1
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Pathways for converting zooplankton traits to ecological insights are paved with findable, accessible, interoperable, and reusable (FAIR) data practices

Jessica Titocci , Patrick Pata , Tiziana Durazzano , Sakina-Dorothée Ayata , Corentin Clerc et al.

ICES Journal of Marine Science, 2025, 82 (2), ⟨10.1093/icesjms/fsaf017⟩

Article dans une revue hal-05037181v1
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First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices

Mathilde Dugenne , Marco Corrales-Ugalde , Jessica Luo , Rainer Kiko , Todd O'Brien et al.

Earth System Science Data, 2024, 16 (6), pp.2971-2999. ⟨10.5194/essd-16-2971-2024⟩

Article dans une revue hal-04648046v1
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Global census of the significance of giant mesopelagic protists to the marine carbon and silicon cycles

Manon Laget , Laetitia Drago , Thelma Panaïotis , Rainer Kiko , Lars Stemmann et al.

Nature Communications, 2024, 15 (1), pp.3341. ⟨10.1038/s41467-024-47651-4⟩

Article dans une revue hal-04590880v1
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Oceanographic features boost latitudinal patterns in copepod body size distribution in the South Atlantic

Érica Becker , Luis Macedo-Soares , Catarina Marcolin , Manoela Brandão , Lars Stemmann et al.

Limnology and Oceanography, 2024, 69 (11), pp.2668-2679. ⟨10.1002/lno.12694⟩

Article dans une revue hal-04886306v1

Combining in situ and ex situ plankton image data to reconstruct zooplankton (>1 mm) volume and mass distribution in the global ocean

Yawouvi Dodji Soviadan , Mathilde Dugenne , Laetitia Drago , Tristan Biard , Emilia Trudnowska et al.

Journal of Plankton Research, 2024, 46 (5), pp.461-474. ⟨10.1093/plankt/fbae046⟩

Article dans une revue hal-04777755v1
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Monitoring and modelling marine zooplankton in a changing climate

Lavenia Ratnarajah , Rana Abu-Alhaija , Angus Atkinson , Sonia Batten , Nicholas J. Bax et al.

Nature Communications, 2023, 14 (1), pp.564. ⟨10.1038/s41467-023-36241-5⟩

Article dans une revue hal-04020893v1
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Three major mesoplanktonic communities resolved by in situ imaging in the upper 500 m of the global ocean

Thelma Panaïotis , Marcel Babin , Tristan Biard , François Carlotti , Laurent Coppola et al.

Global Ecology and Biogeography, 2023, 32 (11), pp.1991-2005. ⟨10.1111/geb.13741⟩

Article dans une revue hal-04164166v2
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Morphological diversity increases with decreasing resources along a zooplankton time series

Miriam Beck , Caroline Cailleton , Lionel Guidi , Corinne Desnos , Laetitia Jalabert et al.

Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (2011), ⟨10.1098/rspb.2023.2109⟩

Article dans une revue hal-04385533v1
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Structures of coexisting marine snow and zooplankton in coastal waters of Svalbard (European Arctic)

Emilia Trudnowska , Katarzyna Błachowiak-Samołyk , Lars Stemmann

Elementa: Science of the Anthropocene, 2023, 11 (1), ⟨10.1525/elementa.2023.00010⟩

Article dans une revue hal-04661039v1
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New Estimate of Organic Carbon Export From Optical Measurements Reveals the Role of Particle Size Distribution and Export Horizon

D. Clements , S. Yang , T. Weber , A. Mcdonnell , R. Kiko et al.

Global Biogeochemical Cycles, 2023, 37 (3), ⟨10.1029/2022GB007633⟩

Article dans une revue hal-04659682v1
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Towards a distributed and operational pelagic imaging network

Rainer Kiko , Rubens Lopes , Y. Dodji Soviadan , Lars Stemmann

Ocean and Coastal Research, 2023, 71, ⟨10.1590/2675-2824071.23109rk⟩

Article dans une revue hal-04660327v1
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Predicting global distributions of eukaryotic plankton communities from satellite data

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé et al.

ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩

Article dans une revue hal-04394784v1
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Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich et al.

ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩

Article dans une revue hal-04184772v1
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Machine Learning for the Study of Plankton and Marine Snow from Images

Jean-Olivier Irisson , Sakina-Dorothée Ayata , Dhugal Lindsay , Lee Karp-Boss , Lars Stemmann

Annual Review of Marine Science, 2022, 14 (1), ⟨10.1146/annurev-marine-041921-013023⟩

Article dans une revue hal-03335138v1
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Establishing Plankton Imagery Dataflows Towards International Biodiversity Data Aggregators

Patricia Martin-Cabrera , Ruben Perez Perez , Jean-Olivier Irrison , Fabien Lombard , Klas Ove Möller et al.

Biodiversity Information Science and Standards, 2022, 6, ⟨10.3897/biss.6.94196⟩

Article dans une revue hal-03958791v1
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Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning

Laetitia Drago , Thelma Panaïotis , Jean-Olivier Irisson , Marcel Babin , Tristan Biard et al.

Frontiers in Marine Science, 2022, 9, pp.894372. ⟨10.3389/fmars.2022.894372⟩

Article dans une revue hal-03810062v1
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni et al.

Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩

Article dans une revue hal-03872935v2
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Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

Yawouvi Dodji Soviadan , Fabio Benedetti , Manoela Brandão , Sakina-Dorothée Ayata , Jean-Olivier Irisson et al.

Progress in Oceanography, 2022, 200, pp.102717. ⟨10.1016/j.pocean.2021.102717⟩

Article dans une revue hal-03449715v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas et al.

Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩

Article dans une revue hal-03781942v1
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Temporal fluctuations in zooplankton size, abundance, and taxonomic composition since 1995 in the North Western Mediterranean Sea

Guillaume Feuilloley , Jean-Marc Fromentin , Claire Saraux , Jean-Olivier Irisson , Laetitia Jalabert et al.

ICES Journal of Marine Science, 2022, 79 (3), pp.882-900. ⟨10.1093/icesjms/fsab190⟩

Article dans une revue hal-03374991v1
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A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5

Rainer Kiko , Marc Picheral , David Antoine , Marcel Babin , Léo Berline et al.

Earth System Science Data, 2022, 14 (9), pp.4315-4337. ⟨10.5194/essd-14-4315-2022⟩

Article dans une revue hal-03794258v1
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Constraining the Particle Size Distribution of Large Marine Particles in the Global Ocean With In Situ Optical Observations and Supervised Learning

D. J. Clements , S. Yang , T. Weber , A. M. P. Mcdonnell , R. Kiko et al.

Global Biogeochemical Cycles, 2022, 36, ⟨10.1029/2021GB007276⟩

Article dans une revue insu-03688125v1
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Machine learning techniques to characterize functional traits of plankton from image data

Eric C. Orenstein , Sakina-Dorothée Ayata , Frédéric Maps , Érica C. Becker , Fabio Benedetti et al.

Limnology and Oceanography, 2022, 67 (8), pp.1647-1669. ⟨10.1002/lno.12101⟩

Article dans une revue hal-03482282v2
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The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms

Marc Picheral , Camille Catalano , Denis Brousseau , Hervé Claustre , Laurent Coppola et al.

Limnology and Oceanography: Methods, 2022, ⟨10.1002/lom3.10475⟩

Article dans une revue hal-03508179v1
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Marine snow morphology illuminates the evolution of phytoplankton blooms and determines their subsequent vertical export

Emilia Trudnowska , Léo Lacour , Mathieu Ardyna , Andreas Rogge , Jean Olivier Irisson et al.

Nature Communications, 2021, 12 (1), pp.2816. ⟨10.1038/s41467-021-22994-4⟩

Article dans une revue hal-03230967v1
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Macroscale patterns of oceanic zooplankton composition and size structure

Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson et al.

Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩

Article dans une revue hal-03318806v1
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Functional trait-based approaches as a common framework for aquatic ecologists

Severine Martini , Floriane Larras , Aurélien Boyé , Emile Faure , Nicole Aberle et al.

Limnology and Oceanography, 2021, 66 (3), pp.965-994. ⟨10.1002/lno.11655⟩

Article dans une revue hal-02996072v1

Tara Oceans: towards global ocean ecosystems biology

Shinichi Sunagawa , Silvia Acinas , Peer Bork , Chris Bowler , Silvia Acinas et al.

Nature Reviews Microbiology, 2020, 18 (8), pp.428-445. ⟨10.1038/s41579-020-0364-5⟩

Article dans une revue hal-04394809v1
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Concomitant changes in the Environment and small pelagic fish community of the Gulf of Lions

Guillaume Feuilloley , Jean-Marc Fromentin , Lars Stemmann , Hervé Demarcq , Claude Estournel et al.

Progress in Oceanography, 2020, 186, pp.102375. ⟨10.1016/j.pocean.2020.102375⟩

Article dans une revue hal-02868174v1

Taxonomic and size structures of zooplankton communities in the fjords along the Atlantic water passage to the Arctic

E. Trudnowska , L. Stemmann , K. Błachowiak-Samołyk , S. Kwasniewski

Journal of Marine Systems, 2020, 204, ⟨10.1016/j.jmarsys.2020.103306⟩

Article dans une revue insu-03661725v1

Are tropical coastal reefs sinks or sources of mesozooplankton? A case study in a Brazilian marine protected area

Gleice S. Santos , Lars Stemmann , Fabien Lombard , Ralf Schwamborn

Coral Reefs, 2019, 38, pp.1107-1120. ⟨10.1007/s00338-019-01860-2⟩

Article dans une revue insu-03661728v1
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Globally Consistent Quantitative Observations of Planktonic Ecosystems

Fabien Lombard , Emmanuel Boss , Anya M Waite , Meike Vogt , Julia Uitz et al.

Frontiers in Marine Science, 2019, 6, pp.Article 196. ⟨10.3389/fmars.2019.00196⟩

Article dans une revue hal-02325576v1
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Global Trends in Marine Plankton Diversity across Kingdoms of Life

Federico Ibarbalz , Nicolas Henry , Manoela Brandão , Severine Martini , Greta Busseni et al.

Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩

Article dans une revue hal-03094778v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Éric Pelletier et al.

Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩

Article dans une revue hal-02999805v1
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The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area

Fabio Benedetti , Laëtitia Jalabert , Marc Sourisseau , Beatriz Becker , Caroline Cailliau et al.

Frontiers in Marine Science, 2019, 6, pp.214. ⟨10.3389/fmars.2019.00214⟩

Article dans une revue hal-02125435v1
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Marine DNA viral macro- and microdiversity from Pole to Pole

Ann Gregory , Ahmed Zayed , Nádia Conceição-Neto , Ben Temperton , Ben Bolduc et al.

Cell, 2019, 177 (5), pp.1109-1123.e14. ⟨10.1016/j.cell.2019.03.040⟩

Article dans une revue hal-02387010v1
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Prediction of unprecedented biological shifts in the global ocean

G. Beaugrand , A. Conversi , A. Atkinson , J. Cloern , S. Chiba et al.

Nature Climate Change, 2019, 9 (3), pp.237-243. ⟨10.1038/s41558-019-0420-1⟩

Article dans une revue hal-02189417v1

Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability

Paolo Sordino , Salvatore d'Aniello , Eric Pelletier , Patrick Wincker , Valeria Nittoli et al.

Molecular Ecology, 2019, 29 (2), pp.292-307. ⟨10.1111/mec.15321⟩

Article dans une revue hal-03955981v1
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Particulate matter flux interception in oceanic mesoscale eddies by the polychaete Poeobius sp.

Svenja Christiansen , Henk-Jan Hoving , Florian Schütte , Helena Hauss , Johannes Karstensen et al.

Limnology and Oceanography Bulletin, 2018, 63 (5), pp.2093-2109. ⟨10.1002/lno.10926⟩

Article dans une revue hal-01927160v1

ZooScanNet: plankton images captured with the ZooScan

Amanda Elineau , Corinne Desnos , Laetitia Jalabert , Marion Olivier , Jean-Baptiste Romagnan et al.

SEANOE = Sea scientific open data publication, 2018, ⟨10.17882/55741⟩

Article dans une revue (data paper) hal-04670751v1
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Yoann Seeleuthner , Samuel Mondy , Vincent Lombard , Quentin Carradec , Eric Pelletier et al.

Nature Communications, 2018, 9, pp.310. ⟨10.1038/s41467-017-02235-3⟩

Article dans une revue hal-01771839v1

New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona

Mohammed-Amin Madoui , Julie Poulain , Kevin Sugier , Marc Wessner , Benjamin Noel et al.

Molecular Ecology, 2017, 26 (17), pp.4467 - 4482. ⟨10.1111/mec.14214⟩

Article dans une revue hal-01621969v1
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Adriana A. Alberti , Julie Poulain , Stefan Engelen , Karine Labadie , Sarah Romac et al.

Scientific Data , 2017, 4, ⟨10.1038/sdata.2017.93⟩

Article dans une revue hal-01771844v1
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Exploring Microdiversity in Novel Kordia sp (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

Marta Royo-Llonch , Isabel Ferrera , Francisco M. Cornejo-Castillo , Pablo Sánchez , Guillem Salazar et al.

Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01317⟩

Article dans une revue hal-03502952v1
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Biological and physical influences on marine snowfall at the equator

R. Kiko , A. Biastoch , P. Brandt , S. Cravatte , H. Hauss et al.

Nature Geoscience, 2017, 10 (11), pp.852+. ⟨10.1038/NGEO3042⟩

Article dans une revue hal-03502948v1

Biogeography and diversity of Collodaria (Radiolaria) in the global ocean

Tristan Biard , Estelle Bigeard , Stéphane Audic , Julie Poulain , Andres Gutierrez-Rodriguez et al.

The International Society of Microbiologial Ecology Journal, 2017, 11 (6), pp.1331-1344. ⟨10.1038/ismej.2017.12⟩

Article dans une revue hal-03502955v1
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High frequency mesozooplankton monitoring: Can imaging systems and automated sample analysis help us describe and interpret changes in zooplankton community composition and size structure — An example from a coastal site

Jean-Louis Jamet , Jean Baptiste Romagnan , Lama Aldamman , Stéphane Gasparini , Paul Nival et al.

Journal of Marine Systems, 2016, 162, pp.18 - 28. ⟨10.1016/j.jmarsys.2016.03.013⟩

Article dans une revue hal-01893632v1
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Plankton networks driving carbon export in the oligotrophic ocean

Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi et al.

Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩

Article dans une revue hal-01275276v1
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The wineglass effect shapes particle export to the deep ocean in mesoscale eddies

Anya M. Waite , Lars Stemmann , Lionel Guidi , Paulo H. R. Calil , Andrew Mc C. Hogg et al.

Geophysical Research Letters, 2016, 43 (18), pp.9791-9800. ⟨10.1002/2015GL066463⟩

Article dans une revue hal-03502974v1
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Temporal Variability of Zooplankton (2000-2013) in the Levantine Sea: Significant Changes Associated to the 2005-2010 EMT-like Event?

Anthony Ouba , Marie Abboud-Abi Saab , Lars Stemmann

PLoS ONE, 2016, 11 (7), pp.e0158484. ⟨10.1371/journal.pone.0158484⟩

Article dans une revue hal-01368224v1
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In situ imaging reveals the biomass of giant protists in the global ocean

Tristan Biard , Lars Stemmann , Marc Picheral , Nicolas Mayot , Pieter Vandromme et al.

Nature, 2016, 532 (7600), pp.504-507. ⟨10.1038/nature17652⟩

Article dans une revue hal-01324873v1
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Proposition of indicators of anthropogenic pressure in the Bay of Toulon (Mediterranean Sea) based on zooplankton time-series

B Serranito , Anais Aubert , L Stemmann , N Rossi , Jean-Louis Jamet

Continental Shelf Research, 2016, 121, ⟨10.1016/j.csr.2016.01.016⟩

Article dans une revue hal-01328957v1
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Open science resources for the discovery and analysis of Tara Oceans data

Stéphane Pesant , Fabrice Not , Marc Picheral , Stefanie Kandels-Lewis , Noan Le Bescot et al.

Scientific Data , 2015, 2, pp.150023. ⟨10.1038/sdata.2015.23⟩

Article dans une revue hal-01253984v1
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Eukaryotic plankton diversity in the sunlit ocean

Noan Le Bescot , Ian Probert , Margaux Carmichael , Julie Poulain , Sarah Romac et al.

Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩

Article dans une revue hal-01253979v1
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Structure and function of the global ocean microbiome

Shinichi Sunagawa , Luis Pedro Coelho , Samuel Chaffron , Jens Roat Kultima , Karine Labadie et al.

Science, 2015, 348 (6237), pp.1261359. ⟨10.1126/science.1261359⟩

Article dans une revue hal-01233742v1

Synchronous marine pelagic regime shifts in the Northern Hemisphere

G. Beaugrand , A. Conversi , S. Chiba , M. Edwards , S. Fonda-Umani et al.

Philosophical Transactions of the Royal Society B: Biological Sciences, 2015, 370 (1659), ⟨10.1098/rstb.2013.0272⟩

Article dans une revue hal-03502742v1

Optical techniques for remote and in-situ characterization of particles pertinent to GEOTRACES

Emmanuel Boss , Lionel Guidi , Mary Jo Richardson , Lars Stemmann , Wilford Gardner et al.

Progress in Oceanography, 2015, 133 (SI), pp.43-54. ⟨10.1016/j.pocean.2014.09.007⟩

Article dans une revue hal-03502737v1
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Comprehensive Model of Annual Plankton Succession Based on the Whole-Plankton Time Series Approach

Jean-Baptiste Romagnan , Louis Legendre , Lionel Guidi , Jean-Louis Jamet , Dominique Jamet et al.

PLoS ONE, 2015, 10 (3), pp.e0119219. ⟨10.1371/journal.pone.0119219⟩

Article dans une revue hal-01225074v1
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A new look at ocean carbon remineralization for estimating deepwater sequestration

Lionel Guidi , Louis Legendre , Gabriel Reygondeau , Julia Uitz , Lars Stemmann et al.

Global Biogeochemical Cycles, 2015, 29 (7), pp.1044-1059. ⟨10.1002/2014GB005063⟩

Article dans une revue hal-03502734v1
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Nitrogen Fuelling of the Pelagic Food Web of the Tropical Atlantic

Vera Sandel , Rainer Kiko , Peter Brandt , Marcus Dengler , Lars Stemmann et al.

PLoS ONE, 2015, 10 (6), pp.e0131258. ⟨10.1371/journal.pone.0131258.s003⟩

Article dans une revue hal-01308142v1
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Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability

E. L. Howes , L. Stemmann , C. Assailly , J. -O. Irisson , M. Dima et al.

Marine Ecology Progress Series, 2015, 531, pp.193-206. ⟨10.3354/meps11322⟩

Article dans une revue hal-03502730v1

Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez , Karoline Faust , Nicolas Henry , Johan Decelle , Sébastien Colin et al.

Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩

Article dans une revue hal-01234200v1
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Rapid formation of large aggregates during the spring bloom of Kerguelen Island: observations and model comparisons

M.-P Jouandet , George A Jackson , F Carlotti , M Picheral , L Stemmann et al.

Biogeosciences, 2014, 11 (16), pp.4393-4406. ⟨10.5194/bg-11-4393-2014⟩

Article dans une revue hal-01308018v1

Individual shrinking to enhance population survival: quantifying the reproductive and metabolic expenditures of a starving jellyfish, Pelagia noctiluca

Martin K. S. Lilley , Amanda Elineau , Martina Ferraris , Alain Thiéry , Lars Stemmann et al.

Journal of Plankton Research, 2014, 36 (6), pp.1585-1597. ⟨10.1093/plankt/fbu079⟩

Article dans une revue hal-03502757v1
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Iron fertilization enhanced net community production but not downward particle flux during the Southern Ocean iron fertilization experiment LOHAFEX

Patrick Martin , Michiel M. Rutgers van Der Loeff , Nicolas Cassar , Pieter Vandromme , Francesco d'Ovidio et al.

Global Biogeochemical Cycles, 2013, 27, pp.871-881. ⟨10.1002/gbc.20077⟩

Article dans une revue hal-01445819v1
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Cross-shelf variability in the Iberian Peninsula Upwelling System: Impact of a mesoscale filament

Vincent Rossi , Véronique Garçon , Joëlle Tassel , Jean-Baptiste Romagnan , Lars Stemmann et al.

Continental Shelf Research, 2013, 59, pp.97-114. ⟨10.1016/j.csr.2013.04.008⟩

Article dans une revue hal-02296654v1
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Ecosystem function and particle flux dynamics across the Mackenzie Shelf (Beaufort Sea, Arctic Ocean): an integrative analysis of spatial variability and biophysical forcings

A. Forest , M. Babin , L. Stemmann , M. Picheral , M. Sampei et al.

Biogeosciences, 2013, 10 (5), pp.2833-2866. ⟨10.5194/bg-10-2833-2013⟩

Article dans une revue hal-03502645v1
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Does eddy-eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre?

Lionel Guidi , Paulo H. R. Calil , Solange Duhamel , Karin M. Bjoerkman , Scott C. Doney et al.

Journal of Geophysical Research: Biogeosciences, 2012, 117, ⟨10.1029/2012JG001984⟩

Article dans une revue hal-03502664v1
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Size distribution of particles and zooplankton across the shelf-basin system in southeast Beaufort Sea: combined results from an Underwater Vision Profiler and vertical net tows

A. Forest , L. Stemmann , M. Picheral , L. Burdorf , D. Robert et al.

Biogeosciences, 2012, 9 (4), pp.1301-1320. ⟨10.5194/bg-9-1301-2012⟩

Article dans une revue hal-03502681v1

Assessing biases in computing size spectra of automatically classified zooplankton from imaging systems: A case study with the ZooScan integrated system

Pieter Vandromme , Lars Stemmann , Carmen Garcìa-Comas , Léo Berline , Xiaoxia Sun et al.

Methods in Oceanography, 2012, 1, pp.3-21. ⟨10.1016/j.mio.2012.06.001⟩

Article dans une revue istex hal-04110610v1
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Marine ecosystems’ responses to climatic and anthropogenic forcings in the Mediterranean

Cecile Guieu , Xavier Durrieu de Madron , Pascal Conan , Frédéric Gazeau , Claude Estournel et al.

Progress in Oceanography, 2011, 91 (2), pp.97-166. ⟨10.1016/j.pocean.2011.02.003⟩

Article dans une revue istex hal-03452771v1

Zooplankton long-term changes in the NW Mediterranean Sea: Decadal periodicity forced by winter hydrographic conditions related to large-scale atmospheric changes?

Carmen Garcia-Comas , Lars Stemmann , Frederic Ibanez , Léo Berline , Maria Grazia Mazzocchi et al.

Journal of Marine Systems, 2011, 87 (3-4), pp.216-226. ⟨10.1016/j.jmarsys.2011.04.003⟩

Article dans une revue istex hal-03502020v1
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Inter-annual fluctuations of zooplankton communities in the Bay of Villefranche-sur-mer from 1995 to 2005 (Northern Ligurian Sea, France)

Pieter Vandromme , Lars Stemmann , Léo Berline , Stéphane Gasparini , Laure Mousseau et al.

Biogeosciences, 2011, 8 (11), pp.3143-3158. ⟨10.5194/bg-8-3143-2011⟩

Article dans une revue hal-03502045v1

Optical imaging of mesopelagic particles indicates deep carbon flux beneath a natural iron-fertilized bloom in the Southern Ocean

Marie-Paule Jouandet , Thomas W. Trull , Lionel Guidi , Marc Picheral , Friederike Ebersbach et al.

Limnology and Oceanography, 2011, 56 (3), pp.1130-1140. ⟨10.4319/lo.2011.56.3.1130⟩

Article dans une revue hal-03502030v1

Census and analysis of zooplankton metadata of the French coasts since 1955

Virginie Raybaud , D. Heroin , Thomas Raud , Jean-Michel Brylinski , L. Stemmann et al.

Journal of Oceanography, 2011, 4, pp.11-37

Article dans une revue hal-00759286v1
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Experimental and modeling evidence of appendicularian-ciliate interactions

Fabien Lombard , Damien Eloire , Angélique Gobet , Lars Stemmann , John R. Dolan et al.

Limnology and Oceanography, 2010, 55 (1), pp.77 - 90. ⟨10.4319/lo.2010.55.1.0077⟩

Article dans une revue hal-01893823v1

Digital zooplankton image analysis using the ZooScan integrated system

Stephane Gasparini , Lars Stemmann , Jean-Baptiste Romagnan , Alison Cawood , Stephane Pesant et al.

Journal of Plankton Research, 2010, 32 (3), pp.285-303. ⟨10.1093/plankt/fbp124⟩

Article dans une revue hal-03502074v1
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Impact of appendicularians on detritus and export fluxes: a model approach at DyFAMed site

L. Berline , Lars Stemmann , Marcello Vichi , Fabien Lombard , Gaby Gorsky

Journal of Plankton Research, 2010, ⟨10.1093/plankt/FBQ163⟩

Article dans une revue hal-00655066v1
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The Underwater Vision Profiler 5: An advanced instrument for high spatial resolution studies of particle size spectra and zooplankton

Marc Picheral , Lionel Guidi , Lars Stemmann , David M. Karl , Ghizlaine Iddaoud et al.

Limnology and Oceanography: Methods, 2010, 8, pp.462-473. ⟨10.4319/lom.2010.8.462⟩

Article dans une revue hal-03502058v1
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Effects of phytoplankton community on production, size and export of large aggregates: A world-ocean analysis

Lionel Guidi , Lars Stemmann , George A. Jackson , Frederic Ibanez , Hervé Claustre et al.

Limnology and Oceanography, 2009, 54 (6), pp.1951-1963. ⟨10.4319/lo.2009.54.6.1951⟩

Article dans une revue hal-03505004v1

Vertical distribution and relative abundance of gelatinous zooplankton, in situ observations near the Mid-Atlantic Ridge

M. Youngbluth , T. Sornes , A. Hosia , L. Stemmann

Deep Sea Research Part II: Topical Studies in Oceanography, 2008, 55 (1-2), pp.119-125. ⟨10.1016/j.dsr2.2007.10.002⟩

Article dans une revue istex hal-03494361v1
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Volume distribution for particles between 3.5 to 2000 µm in the upper 200 m region of the South Pacific Gyre

L. Stemmann , D. Eloire , A. Sciandra , G. A. Jackson , L. Guidi et al.

Biogeosciences, 2008, 5 (2), pp.299-310. ⟨10.5194/bg-5-299-2008⟩

Article dans une revue hal-00330349v2
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Distribution and fluxes of aggregates >100 μm in the upper kilometer of the South-Eastern Pacific

L. Guidi , G. Gorsky , H. Claustre , J. C. Miquel , M. Picheral et al.

Biogeosciences, 2008, 5, pp.1361-1372. ⟨10.5194/bg-5-1361-2008⟩

Article dans une revue hal-04110507v1

Vertical distribution (0-1000 m) of macrozooplankton, estimated using the Underwater Video Profiler, in different hydrographic regimes along the northern portion of the Mid-Atlantic Ridge

L. Stemmann , A. Hosia , M. J. Youngbluth , H. Soiland , M. Picheral et al.

Deep Sea Research Part II: Topical Studies in Oceanography, 2008, 55 (1-2), pp.94-105. ⟨10.1016/j.dsr2.2007.09.019⟩

Article dans une revue istex hal-03494359v1
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Contrasting distribution of aggregates >100 µm in the upper kilometre of the South-Eastern Pacific

L. Guidi , G. Gorsky , Hervé Claustre , M. Picheral , L. Stemmann

Biogeosciences Discussions, 2008, 5 (1), pp.871-901

Article dans une revue hal-00330289v1
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Distribution and fluxes of aggregates > 100 mu m in the upper kilometer of the South-Eastern Pacific

J. C. Miquel , M. Picheral , L. Stemmann , Lionel Guidi , G. Gorsky et al.

Biogeosciences, 2008, 5 (5), pp.1361-1372. ⟨10.5194/bg-5-1361-2008⟩

Article dans une revue hal-03494358v1

Distribution of net-collected planktonic cnidarians along the northern Mid-Atlantic Ridge and their associations with the main water masses

A. Hosia , L. Stemmann , M. Youngbluth

Deep Sea Research Part II: Topical Studies in Oceanography, 2008, 55 (1-2), pp.106-118. ⟨10.1016/j.dsr2.2007.09.007⟩

Article dans une revue istex hal-03494360v1

Relationship between particle size distribution and flux in the mesopelagic zone

Lionel Guidi , George A. Jackson , Lars Stemmann , Juan Carlos Miquel , Marc Picheral et al.

Deep Sea Research Part I: Oceanographic Research Papers, 2008, 55 (10), pp.1364-1374. ⟨10.1016/j.dsr.2008.05.014⟩

Article dans une revue istex hal-03494337v1

Effects of frontal processes on marine aggregate dynamics and fluxes: An interannual study in a permanent geostrophic front (NW Mediterranean)

Lars Stemmann , Louis Prieur , Louis Legendre , Isabelle Taupier-Letage , Marc Picheral et al.

Journal of Marine Systems, 2008, 70 (1-2), pp.1-20. ⟨10.1016/j.jmarsys.2007.02.014⟩

Article dans une revue istex hal-03494353v1
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Global zoogeography of fragile macrozooplankton in the upper 100-1000 m inferred from the underwater video profiler

Lars Stemmann , Marsh Youngbluth , Kevin Robert , Aino Hosia , Marc Picheral et al.

ICES JOURNAL OF MARINE SCIENCE, 2008, 65 (3), pp.433-442. ⟨10.1093/icesjms/fsn010⟩

Article dans une revue hal-03494350v1

Vertical distribution of aggregates (> 110 mu m) and mesoscale activity in the northeastern Atlantic: Effects on the deep vertical export of surface carbon

Lionel Guidi , Lars Stemmann , Louis Legendre , Marc Picheral , Louis Prieur et al.

Limnology and Oceanography, 2007, 52 (1), pp.7-18. ⟨10.4319/lo.2007.52.1.0007⟩

Article dans une revue hal-03504960v1

A vertical model of particle size distributions and fluxes in the midwater column that includes biological and physical processes - Part I: model formulation

L Stemmann , Ga Jackson , D Ianson

Deep Sea Research Part I: Oceanographic Research Papers, 2004, 51 (7), pp.865-884. ⟨10.1016/j.dsr.2004.03.001⟩

Article dans une revue istex hal-03506668v1

A vertical model of particle size distributions and fluxes in the midwater column that includes biological and physical processes - Part II: application to a three year survey in the NW Mediterranean Sea

L Stemmann , Ga Jackson , G Gorsky

Deep Sea Research Part I: Oceanographic Research Papers, 2004, 51 (7), pp.885-908. ⟨10.1016/j.dsr.2004.03.002⟩

Article dans une revue istex hal-03506669v1
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Marine snow latitudinal distribution in the equatorial Pacific along 180 degrees

G Gorsky , R Le Borgne , M Picheral , L Stemmann

Journal of Geophysical Research. Oceans, 2003, 108 (C12), ⟨10.1029/2001JC001064⟩

Article dans une revue istex hal-03482948v1

Pulsed remineralisation in the northwestern Mediterranean Sea: a hypothesis

Michel Denis , Valérie Martin , André Momzikoff , Geneviève Gondry , Lars Stemmann et al.

Journal of Marine Systems, 2003, 39, pp.19-41. ⟨10.1016/S0924-7963(02)00244-0⟩

Article dans une revue istex hal-00770806v1

Four-year study of large-particle vertical distribution (0-1000 m) in the NW Mediterranean in relation to hydrology, phytoplankton, and vertical flux

L Stemmann , G Gorsky , Jc Marty , M Picheral , Jc Miquel

Deep Sea Research Part II: Topical Studies in Oceanography, 2002, 49 (11), pp.2143-2162. ⟨10.1016/S0967-0645(02)00032-2⟩

Article dans une revue istex hal-03483025v1

Large particulate matter in the Western Mediterranean I. LPM distribution related to mesoscale hydrodynamics

G Gorsky , L Prieur , I. Taupier-Letage , L Stemmann , M Picheral

Journal of Marine Systems, 2002, 33, pp.289-311. ⟨10.1016/S0924-7963(02)00063-5⟩

Article dans une revue hal-03482989v1

Use of the Underwater Video Profiler for the study of aggregate dynamics in the North Mediterranean

G Gorsky , M Picheral , L Stemmann

Estuarine, Coastal and Shelf Science, 2000, 50 (1), pp.121-128. ⟨10.1006/ecss.1999.0539⟩

Article dans une revue istex hal-03483093v1

Diel variation in the vertical distribution of particulate matter (> 0.15 mm) in the NW Mediterranean Sea investigated with the Underwater Video Profiler

L Stemmann , M Picheral , G Gorsky

Deep Sea Research Part I: Oceanographic Research Papers, 2000, 47 (3), pp.505-531. ⟨10.1016/S0967-0637(99)00100-4⟩

Article dans une revue istex hal-03483088v1

Learning global plankton size distribution using the Pelagic Size Structure database

Mathilde Dugenne , Marco Corrales , Jessica Y. Luo , Jean-Oliver Irisson , Lars Stemmann et al.

Ocean Sciences Meeting, 2024, New Orleans, Louisiana, Unknown Region

Communication dans un congrès hal-04638964v1

Use of CMIP6 biogeochemical simulations to assess the effect of climate forcing on plankton size structure

Marco Vinicio Corrales , Colleen Petrik , Mathilde Dugenne , Todd O'Brien , Lars Stemmann et al.

2024 Ocean Sciences Meeting, 2024, New Orleans, Louisiana, United States

Communication dans un congrès hal-04638965v1

In situ imaging highlight the important role of giant mesopelagic protists in the biogeochemical cycles of carbon and silicon

Manon Laget , Laetitia Drago , Thelma Panaiotis , Rainer Kiko , Lars Stemmann et al.

Ocean Science Meeting 2024 (OSM24), American Geophysical Union (AGU); Association for the Sciences of Limnology and Oceanography (ASLO); Oceanography Society (TOS), Feb 2024, New Orleans, Louisiana, United States

Communication dans un congrès hal-04638966v1

Morphological diversity increases with decreasing resources along a zooplankton time series

Miriam Beck , Lionel Guidi , Lars Stemmann , Sakina-Dorothée Ayata , Jean-Olivier Irisson

ASLO Aquatic Sciences Meeting, 2023, Palma de Mallorca, Spain

Communication dans un congrès hal-04639094v1

Resolving the scales of plankton ecology and biogeochemical fluxes with the Underwater Vision Profiler

Marc Picheral , Camille Catalano , Alexandre Accardo , Alberto Baudena , Hervé Claustre et al.

ASLO Aquatic Sciences Meeting, 2023, Palma de Mallorca, Spain

Communication dans un congrès hal-04194467v1

Functional trait-based approaches as a common framework for aquatic ecologists: Synthesis and recent results

Sakina-Dorothée Ayata , Séverine Martini , Martin Laviale , Beatrix E Beisner , Floriane Larras et al.

ALSO Aquatic Sciences Meeting, Association for the Sciences of Limnology and Oceanography (ASLO), Jun 2023, Palma de Mallorca, Spain. ⟨10.1002/lno.11655⟩

Communication dans un congrès hal-04117032v1

Zooplankton size distribution in the Atlantic Ocean: recent estimates from a global pelagic size structure database and relationships with environmental factors

Mathilde Dugenne , Marco Corrales , Lars Stemmann , Charles Stock , T. O'Brien et al.

ASLO Aquatic Sciences Meeting, 2023, Palma de Mallorca, Spain

Communication dans un congrès hal-04194468v1

Boosting careers for a blue future: the new specialization track on “Ocean Literacy, Education and Communication" as part of the International Master in Marine Biological Resources, IMBRSea

Carolyn Scheurle , E Copejans , M Mokos , C Dromgool-Regan , E Bastos et al.

EMSEA conference, 2022, Palma de Mallorca, Spain

Communication dans un congrès hal-03970368v1

A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits

Miriam Beck , Sakina-Dorothée Ayata , Marc Picheral , Fabien Lombard , Rainer Kiko et al.

SFEcologie 2022, Nov 2022, Metz, France

Communication dans un congrès hal-04026448v1

Morphological diversity increases with oligotrophy along a zooplankton time-series

M. Beck , Sakina-Dorothée Ayata , C. Cailleton , L. Stemmann , L Guidi et al.

4th Marine Imaging Workshop, 2022, Brest, France

Communication dans un congrès hal-04024037v1

Phytoplankton automated in vivo/in situ observations: towards a new approach of Essential Ocean Variables of marine coastal ecosystems.

Luis Felipe Artigas , Patricia Cabrera , Pascal Claquin , Véronique Créach , Clémentine Gallot et al.

ASLO 2021 Aquatic Sciences Meeting, Association for the Sciences of Limnology and Oceanography, Jun 2021, Palma de Mallorca - Iles Baléares, Spain

Communication dans un congrès hal-04543083v1

Benchmark of image classification using several large plankton datasets: Convolutional Neural Networks improve detection of rare taxa

Thelma Panaiotis , Guillaume Boniface-Chang , Gabriel Dulac-Arnold , Benjamin Blanc , Tristan Biard et al.

ASLO 2021 Aquatic Sciences Meeting, Association for the Sciences of Limnology and Oceanography - ASLO, Jun 2021, Online, Unknown Region

Communication dans un congrès hal-04026436v1

Morphological diversity increases with oligotrophy along a zooplankton time series

Jean-Olivier Irisson , Caroline Cailleton , Corinne Desnos , Laëtitia Jalabert , Amanda Elineau et al.

Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region

Communication dans un congrès hal-04026432v1

Typology of Plankton Communities seen by In Situ Imaging, from the Epi to the Mesopelagic Layers of the Global Ocean.

T. Panaiotis , M. Babin , T. Biard , F. Carlotti , L. Coppola et al.

Ocean Science Meeting, 2020, San Diego, USA, Unknown Region

Communication dans un congrès hal-04024041v1

UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms

Marc Picheral , Emna Abidi , François Berry , Jerome Coindat , Denis Brousseau et al.

Ocean Sciences Meeting, 2020, San Diego, United States

Communication dans un congrès hal-04026430v1

Coordinating Efforts to Define Marine Plankton Imagery Data and Metadata Best Practices and Standards

Patricia Martin-Cabrera , Fabien Lombard , Jean-Olivier Irisson , Lars Stemmann , Klas Möller et al.

Biodiversity Information Science and Standards, 2020, Online, Unknown Region. pp.e58932, ⟨10.3897/biss.4.58932⟩

Communication dans un congrès hal-04026442v1

Unravelling the dynamics of pelagic ecosystems by quantitative observation of morphological attributes of marine snow: a case study in the Arctic

Emilia Trudnowska , Leo Lacour , Andreas Rogge , Jean Olivier Irisson , Anya M Waite et al.

Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region

Communication dans un congrès hal-04026433v1

Towards a global in situ monitoring of plankton using imaging systems: lessons learnt from the past 10 years of observation in Europe

Lars Stemmann , Jean-Baptiste Romagnan , Alain Lefebvre , Gérald Grégori , Jean-Olivier Irisson et al.

2019 IMBeR Open Science Conference, Integrated Marine Biosphere Research - IMBeR, Jun 2019, Brest, France

Communication dans un congrès hal-04026399v1

Global in-situ imaging of large plankton and particles by the Underwater Vision Profiler in the upper kilometer of all oceans

L. Stemmann , F. Lombard , L Guidi , L. Coppola , J.O. Irisson et al.

Ocean Science Meeting, 2018, Portland, Oregon, USA, Unknown Region

Communication dans un congrès hal-04024047v1

Morphological diversity increases with oligotrophy along a zooplankton time series

C. Cailleton , Corinne Desnos , Laëtitia Jalabert , Amanda Elineau , Lars Stemmann et al.

SFEcologie 2018, 2018, Rennes, Unknown Region

Communication dans un congrès hal-04026401v1

Spatio-temporal variations of the planktonic communities in a North Atlantic Marine Protected Area and their potential links with Sardina pilchardus (Walbaum, 1792) catches

Fabio Benedetti , Laëtitia Jalabert , Marc Sourisseau , Beatriz Beker , Amanda Elineau et al.

COAST, 2017, Bordeaux, Unknown Region

Communication dans un congrès hal-04026402v1

Calcifying pteropod time series provides a baseline against which to measure local environmental change

E. Howes , C. Assailly , Jean-Olivier Irisson , L. Stemmann

Time-series analysis in marine science and applications for industry, 2012, Brest, Unknown Region

Communication dans un congrès hal-04026404v1

Decadal variability of zooplankton communities of the NW Mediterranean sea (weekly sampled from 1995 to 2006) in relation with climatic forcing

Pieter Vandromme , Lars Stemmann , Jean-Marc Guarini , Laure Mousseau , Stéphane Gasparini et al.

ClimECO2 International Summer School - Oceans, Marine Ecosystems, and Society facing Climate Change, Aug 2010, Brest, France

Communication dans un congrès hal-00502917v1

Zooplancton : macroplancton et séries à long terme

Paul Nival , Fabien Lombard , Lars Stemmann , Jacqueline Goy , Janine Cuzin

Chistophe Migon; Antoine Sciandra; Paul Nival. La mer Méditerranée face au changement global 2. Dynamique biologique et évolution de la mer Ligure, ISTE Editions Ltd, pp.115-154, 2021, 978-1-78405-733-6

Chapitre d'ouvrage hal-03200031v1

Zooplankton II. Macroplankton and Long-Term Series

Paul Nival , Fabien Lombard , Janine Cuzin , Jacqueline Goy , Lars Stemmann

Christophe Migon; Antoine Sciandra; Paul Nival. The Mediterranean Sea in the Era of Global Change 2. 30 Years of Multidisciplinary Study of the Ligurian Sea, ISTE Ltd; John Wiley & Sons, Inc., pp.109-146, 2020, 978-1-78630-586-2. ⟨10.1002/9781119704782.ch4⟩

Chapitre d'ouvrage hal-03199632v1

Plankton and Particle Size and Packaging: From Determining Optical Properties to Driving the Biological Pump

L. Stemmann , E. Boss

Carlson, CA and Giovannoni, SJ. ANNUAL REVIEW OF MARINE SCIENCE, VOL 4, 4, pp.263-290, 2012, Annual Review of Marine Science, 978-0-8243-4504-4. ⟨10.1146/annurev-marine-120710-100853⟩

Chapitre d'ouvrage hal-03502686v1
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Functional trait-based approaches as a common framework for freshwater and marine ecologists

Severine Martini , Floriane Larras , Aurélien Boyé , Emile Faure , Nicole Aberle et al.

11th Symposium for European Freshwater Sciences (SEFS), Jun 2019, Zagreb, Croatia

Poster de conférence hal-03232606v1