lars stemmann

119

Documents

Publications

	Morphological diversity increases with decreasing resources along a zooplankton time series Miriam Beck , Lionel Guidi , Lars Stemmann , Sakina-Dorothée Ayata , Jean-Olivier Irisson ASLO Aquatic Sciences Meeting, 2023, Palma de Mallorca, Spain Conference papers hal-04639094v1
	A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits Miriam Beck , Sakina-Dorothée Ayata , Marc Picheral , Fabien Lombard , Rainer Kiko SFEcologie 2022, 2022, Metz, France Conference papers hal-04026448v1
	Morphological diversity increases with oligotrophy along a zooplankton time-series M. Beck , S.D. Ayata , C. Cailleton , L. Stemmann , L Guidi 4th Marine Imaging Workshop, 2022, Brest, France Conference papers hal-04024037v1
	Boosting careers for a blue future: the new specialization track on “Ocean Literacy, Education and Communication" as part of the International Master in Marine Biological Resources, IMBRSea Carolyn Scheurle , E Copejans , M Mokos , C Dromgool-Regan , E Bastos EMSEA conference, 2022, Palma de Mallorca, Spain Conference papers hal-03970368v1
	Benchmark of image classification using several large plankton datasets: Convolutional Neural Networks improve detection of rare taxa Thelma Panaiotis , Guillaume Boniface-Chang , Gabriel Dulac-Arnold , Benjamin Blanc , Tristan Biard ASLO 2021 Aquatic Sciences Meeting, Jun 2021, Online, Unknown Region Conference papers hal-04026436v1
	UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms Marc Picheral , Emna Abidi , François Berry , Jerome Coindat , Denis Brousseau Ocean Sciences Meeting, 2020, San Diego, United States Conference papers hal-04026430v1
	Typology of Plankton Communities seen by In Situ Imaging, from the Epi to the Mesopelagic Layers of the Global Ocean. T. Panaiotis , M. Babin , T. Biard , F. Carlotti , L. Coppola Ocean Science Meeting, 2020, San Diego, USA, Unknown Region Conference papers hal-04024041v1
	Unravelling the dynamics of pelagic ecosystems by quantitative observation of morphological attributes of marine snow: a case study in the Arctic Emilia Trudnowska , Leo Lacour , Andreas Rogge , Jean Olivier Irisson , Anya M Waite Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region Conference papers hal-04026433v1
	Coordinating Efforts to Define Marine Plankton Imagery Data and Metadata Best Practices and Standards Patricia Martin-Cabrera , Fabien Lombard , Jean-Olivier Irisson , Lars Stemmann , Klas Möller Biodiversity Information Science and Standards, 2020, Online, Unknown Region. pp.e58932, ⟨10.3897/biss.4.58932⟩ Conference papers hal-04026442v1
	Morphological diversity increases with oligotrophy along a zooplankton time series Jean-Olivier Irisson , Caroline Cailleton , Corinne Desnos , Laëtitia Jalabert , Amanda Elineau Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region Conference papers hal-04026432v1
	Towards a global in situ monitoring of plankton using imaging systems: lessons learnt from the past 10 years of observation in Europe Lars Stemmann , Jean-Baptiste Romagnan , Alain Lefebvre , Gérald Grégori , Jean-Olivier Irisson 2019 IMBeR Open Science Conference, Jun 2019, Brest, France Conference papers hal-04026399v1
	Morphological diversity increases with oligotrophy along a zooplankton time series C. Cailleton , Corinne Desnos , Laëtitia Jalabert , Amanda Elineau , Lars Stemmann SFEcologie 2018, 2018, Rennes, Unknown Region Conference papers hal-04026401v1
	Global in-situ imaging of large plankton and particles by the Underwater Vision Profiler in the upper kilometer of all oceans L. Stemmann , F. Lombard , L Guidi , L. Coppola , J.O. Irisson Ocean Science Meeting, 2018, Portland, Oregon, USA, Unknown Region Conference papers hal-04024047v1
	Spatio-temporal variations of the planktonic communities in a North Atlantic Marine Protected Area and their potential links with Sardina pilchardus (Walbaum, 1792) catches Fabio Benedetti , Laëtitia Jalabert , Marc Sourisseau , Beatriz Beker , Amanda Elineau COAST, 2017, Bordeaux, Unknown Region Conference papers hal-04026402v1
	Calcifying pteropod time series provides a baseline against which to measure local environmental change E. Howes , C. Assailly , Jean-Olivier Irisson , L. Stemmann Time-series analysis in marine science and applications for industry, 2012, Brest, Unknown Region Conference papers hal-04026404v1
	DECADAL VARIABILITY OF ZOOPLANKTON COMMUNITIES OF THE NW MEDITERRANEAN SEA (WEEKLY SAMPLED FROM 1995 TO 2006) IN RELATION WITH CLIMATIC FORCING. Vandromme Pieter , Lars Stemmann , Jean-Marc Guarini , Laure Mousseau , Stéphane Gasparini ClimECO2 International Summer School - Oceans, Marine Ecosystems, and Society facing Climate Change, Aug 2010, Brest, France Conference papers hal-00502917v1

	Global census of the significance of giant mesopelagic protists to the marine carbon and silicon cycles Manon Laget , Laetitia Drago , Thelma Panaïotis , Rainer Kiko , Lars Stemmann Nature Communications, 2024, 15 (1), pp.3341. ⟨10.1038/s41467-024-47651-4⟩ Journal articles hal-04590880v1
	First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices Mathilde Dugenne , Marco Corrales-Ugalde , Jessica Luo , Rainer Kiko , Todd O'Brien Earth System Science Data, 2024, 16 (6), pp.2971-2999. ⟨10.5194/essd-16-2971-2024⟩ Journal articles hal-04648046v1
	Towards a distributed and operational pelagic imaging network Rainer Kiko , Rubens Lopes , Y. Dodji Soviadan , Lars Stemmann Ocean and Coastal Research, 2023, 71, ⟨10.1590/2675-2824071.23109rk⟩ Journal articles hal-04660327v1
	Ocean-wide comparisons of mesopelagic planktonic community structures Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩ Journal articles hal-04184772v1
	Structures of coexisting marine snow and zooplankton in coastal waters of Svalbard (European Arctic) Emilia Trudnowska , Katarzyna Błachowiak-Samołyk , Lars Stemmann Elementa: Science of the Anthropocene, 2023, 11 (1), ⟨10.1525/elementa.2023.00010⟩ Journal articles hal-04661039v1
	Morphological diversity increases with decreasing resources along a zooplankton time series Miriam Beck , Caroline Cailleton , Lionel Guidi , Corinne Desnos , Laetitia Jalabert Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (2011), ⟨10.1098/rspb.2023.2109⟩ Journal articles hal-04385533v1
	New Estimate of Organic Carbon Export From Optical Measurements Reveals the Role of Particle Size Distribution and Export Horizon D. Clements , S. Yang , T. Weber , A. Mcdonnell , R. Kiko Global Biogeochemical Cycles, 2023, 37 (3), ⟨10.1029/2022GB007633⟩ Journal articles hal-04659682v1
	Monitoring and modelling marine zooplankton in a changing climate Lavenia Ratnarajah , Rana Abu-Alhaija , Angus Atkinson , Sonia Batten , Nicholas J. Bax Nature Communications, 2023, 14 (1), pp.564. ⟨10.1038/s41467-023-36241-5⟩ Journal articles hal-04020893v1
	Temporal fluctuations in zooplankton size, abundance, and taxonomic composition since 1995 in the North Western Mediterranean Sea Guillaume Feuilloley , Jean-Marc Fromentin , Claire Saraux , Jean-Olivier Irisson , Laetitia Jalabert ICES Journal of Marine Science, 2022, 79 (3), pp.882-900. ⟨10.1093/icesjms/fsab190⟩ Journal articles hal-03374991v1
	Priorities for ocean microbiome research Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩ Journal articles hal-03781942v1
	Machine learning techniques to characterize functional traits of plankton from image data Eric C. Orenstein , Sakina-Dorothée Ayata , Frédéric Maps , Érica C. Becker , Fabio Benedetti Limnology and Oceanography, 2022, 67 (8), pp.1647-1669. ⟨10.1002/lno.12101⟩ Journal articles hal-03482282v2
	The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms Marc Picheral , Camille Catalano , Denis Brousseau , Hervé Claustre , Laurent Coppola Limnology and Oceanography: Methods, 2022, ⟨10.1002/lom3.10475⟩ Journal articles hal-03508179v1
	Constraining the Particle Size Distribution of Large Marine Particles in the Global Ocean With In Situ Optical Observations and Supervised Learning D. J. Clements , S. Yang , T. Weber , A. M. P. Mcdonnell , R. Kiko Global Biogeochemical Cycles, 2022, 36, ⟨10.1029/2021GB007276⟩ Journal articles insu-03688125v1
	Patterns of mesozooplankton community composition and vertical fluxes in the global ocean Yawouvi Dodji Soviadan , Fabio Benedetti , Manoela Brandão , Sakina-Dorothée Ayata , Jean-Olivier Irisson Progress in Oceanography, 2022, pp.102717. ⟨10.1016/j.pocean.2021.102717⟩ Journal articles hal-03449715v1
	Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩ Journal articles hal-03872935v2
	Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩ Journal articles hal-03872940v1
	A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5 Rainer Kiko , Marc Picheral , David Antoine , Marcel Babin , Léo Berline Earth System Science Data, 2022, 14 (9), pp.4315-4337. ⟨10.5194/essd-14-4315-2022⟩ Journal articles hal-03794258v1
	Machine Learning for the Study of Plankton and Marine Snow from Images Jean-Olivier Irisson , Sakina-Dorothée Ayata , Dhugal Lindsay , Lee Karp-Boss , Lars Stemmann Annual Review of Marine Science, 2022, 14 (1), ⟨10.1146/annurev-marine-041921-013023⟩ Journal articles hal-03335138v1
	Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning Laetitia Drago , Thelma Panaïotis , Jean-Olivier Irisson , Marcel Babin , Tristan Biard Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.894372⟩ Journal articles hal-03810062v1
	Establishing Plankton Imagery Dataflows Towards International Biodiversity Data Aggregators Patricia Martin-Cabrera , Ruben Perez Perez , Jean-Olivier Irrison , Fabien Lombard , Klas Ove Möller Biodiversity Information Science and Standards, 2022, 6, ⟨10.3897/biss.6.94196⟩ Journal articles hal-03958791v1
	Macroscale patterns of oceanic zooplankton composition and size structure Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩ Journal articles hal-03318806v1
	Functional trait-based approaches as a common framework for aquatic ecologists Severine Martini , Floriane Larras , Aurélien Boyé , Emile Faure , Nicole Aberle Limnology and Oceanography, 2021, 66 (3), pp.965-994. ⟨10.1002/lno.11655⟩ Journal articles hal-02996072v1
	Marine snow morphology illuminates the evolution of phytoplankton blooms and determines their subsequent vertical export Emilia Trudnowska , Léo Lacour , Mathieu Ardyna , Andreas Rogge , Jean Olivier Irisson Nature Communications, 2021, 12 (1), pp.2816. ⟨10.1038/s41467-021-22994-4⟩ Journal articles hal-03230967v1
	Taxonomic and size structures of zooplankton communities in the fjords along the Atlantic water passage to the Arctic E. Trudnowska , L. Stemmann , K. Błachowiak-Samołyk , S. Kwasniewski Journal of Marine Systems, 2020, 204, ⟨10.1016/j.jmarsys.2020.103306⟩ Journal articles insu-03661725v1
	Concomitant changes in the Environment and small pelagic fish community of the Gulf of Lions Guillaume Feuilloley , Jean-Marc Fromentin , Lars Stemmann , Hervé Demarcq , Claude Estournel Progress in Oceanography, 2020, 186, pp.102375. ⟨10.1016/j.pocean.2020.102375⟩ Journal articles hal-02868174v1
	Prediction of unprecedented biological shifts in the global ocean G. Beaugrand , A. Conversi , A. Atkinson , J. Cloern , S. Chiba Nature Climate Change, 2019, 9 (3), pp.237-243. ⟨10.1038/s41558-019-0420-1⟩ Journal articles hal-02189417v1
	Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability Paolo Sordino , Salvatore d'Aniello , Eric Pelletier , Patrick Wincker , Valeria Nittoli Molecular Ecology, 2019, 29 (2), pp.292-307. ⟨10.1111/mec.15321⟩ Journal articles hal-03955981v1
	Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome Guillem Salazar , Lucas Paoli , Adriana A. Alberti , Jaime Huerta-Cepas , Hans-Joachim Ruscheweyh Cell, 2019, 179 (5), pp.1068-1083.e21. ⟨10.1016/j.cell.2019.10.014⟩ Journal articles hal-02964513v1
	Marine DNA viral macro- and microdiversity from Pole to Pole Ann Gregory , Ahmed Zayed , Nádia Conceição-Neto , Ben Temperton , Ben Bolduc Cell, 2019, 177 (5), pp.1109-1123.e14. ⟨10.1016/j.cell.2019.03.040⟩ Journal articles hal-02387010v1
	The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area Fabio Benedetti , Laëtitia Jalabert , Marc Sourisseau , Beatriz Becker , Caroline Cailliau Frontiers in Marine Science, 2019, 6, pp.214. ⟨10.3389/fmars.2019.00214⟩ Journal articles hal-02125435v1
	Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Eric Pelletier Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩ Journal articles hal-02999805v1
	Globally Consistent Quantitative Observations of Planktonic Ecosystems Fabien Lombard , Emmanuel Boss , Anya M Waite , Meike Vogt , Julia Uitz Frontiers in Marine Science, 2019, 6, pp.196. ⟨10.3389/fmars.2019.00196⟩ Journal articles hal-02325576v1
	Global Trends in Marine Plankton Diversity across Kingdoms of Life Federico Ibarbalz , Nicolas Henry , Manoela Brandão , Severine Martini , Greta Busseni Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩ Journal articles hal-03094778v1
	Are tropical coastal reefs sinks or sources of mesozooplankton? A case study in a Brazilian marine protected area Gleice S. Santos , Lars Stemmann , Fabien Lombard , Ralf Schwamborn Coral Reefs, 2019, 38, pp.1107-1120. ⟨10.1007/s00338-019-01860-2⟩ Journal articles insu-03661728v1
	Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans Yoann Seeleuthner , Samuel Mondy , Vincent Lombard , Quentin Carradec , Eric Pelletier Nature Communications, 2018, 9, pp.310. ⟨10.1038/s41467-017-02235-3⟩ Journal articles hal-01771839v1
	Particulate matter flux interception in oceanic mesoscale eddies by the polychaete Poeobius sp. Svenja Christiansen , Henk-Jan Hoving , Florian Schütte , Helena Hauss , Johannes Karstensen Limnology and Oceanography Bulletin, 2018, 63 (5), pp.2093-2109. ⟨10.1002/lno.10926⟩ Journal articles hal-01927160v1
	Exploring Microdiversity in Novel Kordia sp (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes Marta Royo-Llonch , Isabel Ferrera , Francisco M. Cornejo-Castillo , Pablo Sánchez , Guillem Salazar Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01317⟩ Journal articles hal-03502952v1
	Biogeography and diversity of Collodaria (Radiolaria) in the global ocean Tristan Biard , Estelle Bigeard , Stéphane Audic , Julie Poulain , Andres Gutierrez-Rodriguez The International Society of Microbiologial Ecology Journal, 2017, 11 (6), pp.1331-1344. ⟨10.1038/ismej.2017.12⟩ Journal articles hal-03502955v1
	New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona Mohammed-Amin Madoui , Julie Poulain , Kevin Sugier , Marc Wessner , Benjamin Noel Molecular Ecology, 2017, 26 (17), pp.4467 - 4482. ⟨10.1111/mec.14214⟩ Journal articles hal-01621969v1
	Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition Adriana A. Alberti , Julie Poulain , Stefan Engelen , Karine Labadie , Sarah Romac Scientific Data , 2017, 4, ⟨10.1038/sdata.2017.93⟩ Journal articles hal-01771844v1
	Biological and physical influences on marine snowfall at the equator R. Kiko , A. Biastoch , P. Brandt , S. Cravatte , H. Hauss Nature Geoscience, 2017, 10 (11), pp.852+. ⟨10.1038/NGEO3042⟩ Journal articles hal-03502948v1
	Temporal Variability of Zooplankton (2000-2013) in the Levantine Sea: Significant Changes Associated to the 2005-2010 EMT-like Event? Anthony Ouba , Marie Abboud-Abi Saab , Lars Stemmann PLoS ONE, 2016, 11 (7), pp.e0158484. ⟨10.1371/journal.pone.0158484⟩ Journal articles hal-01368224v1
	In situ imaging reveals the biomass of giant protists in the global ocean Tristan Biard , Lars Stemmann , Marc Picheral , Nicolas Mayot , Pieter Vandromme Nature, 2016, 532 (7600), pp.504-507. ⟨10.1038/nature17652⟩ Journal articles hal-01324873v1
	Proposition of indicators of anthropogenic pressure in the Bay of Toulon (Mediterranean Sea) based on zooplankton time-series B Serranito , Anais Aubert , L Stemmann , N Rossi , Jean-Louis Jamet Continental Shelf Research, 2016, 121, ⟨10.1016/j.csr.2016.01.016⟩ Journal articles hal-01328957v1
	The wineglass effect shapes particle export to the deep ocean in mesoscale eddies Anya M. Waite , Lars Stemmann , Lionel Guidi , Paulo H. R. Calil , Andrew Mc C. Hogg Geophysical Research Letters, 2016, 43 (18), pp.9791-9800. ⟨10.1002/2015GL066463⟩ Journal articles hal-03502974v1
	Plankton networks driving carbon export in the oligotrophic ocean Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩ Journal articles hal-01275276v1
	High frequency mesozooplankton monitoring: Can imaging systems and automated sample analysis help us describe and interpret changes in zooplankton community composition and size structure — An example from a coastal site Jean-Louis Jamet , Jean Baptiste Romagnan , Lama Aldamman , Stéphane Gasparini , Paul Nival Journal of Marine Systems, 2016, 162, pp.18 - 28. ⟨10.1016/j.jmarsys.2016.03.013⟩ Journal articles hal-01893632v1
	Nitrogen Fuelling of the Pelagic Food Web of the Tropical Atlantic Vera Sandel , Rainer Kiko , Peter Brandt , Marcus Dengler , Lars Stemmann PLoS ONE, 2015, 10 (6), pp.e0131258. ⟨10.1371/journal.pone.0131258.s003⟩ Journal articles hal-01308142v1
	Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability E. L. Howes , L. Stemmann , C. Assailly , J. -O. Irisson , M. Dima Marine Ecology Progress Series, 2015, 531, pp.193-206. ⟨10.3354/meps11322⟩ Journal articles hal-03502730v1
	Synchronous marine pelagic regime shifts in the Northern Hemisphere G. Beaugrand , A. Conversi , S. Chiba , M. Edwards , S. Fonda-Umani Philosophical Transactions of the Royal Society B: Biological Sciences, 2015, 370 (1659), ⟨10.1098/rstb.2013.0272⟩ Journal articles hal-03502742v1
	Optical techniques for remote and in-situ characterization of particles pertinent to GEOTRACES Emmanuel Boss , Lionel Guidi , Mary Jo Richardson , Lars Stemmann , Wilford Gardner Progress in Oceanography, 2015, 133 (SI), pp.43-54. ⟨10.1016/j.pocean.2014.09.007⟩ Journal articles hal-03502737v1
	Structure and function of the global ocean microbiome Shinichi Sunagawa , Luis Pedro Coelho , Samuel Chaffron , Jens Roat Kultima , Karine Labadie Science, 2015, 348 (6237), pp.1261359. ⟨10.1126/science.1261359⟩ Journal articles hal-01233742v1
	Determinants of community structure in the global plankton interactome Gipsi Lima-Mendez , Karoline Faust , Nicolas Henry , Johan Decelle , Sébastien Colin Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩ Journal articles hal-01234200v1
	Comprehensive Model of Annual Plankton Succession Based on the Whole-Plankton Time Series Approach Jean-Baptiste Romagnan , Louis Legendre , Lionel Guidi , Jean-Louis Jamet , Dominique Jamet PLoS ONE, 2015, 10 (3), pp.e0119219. ⟨10.1371/journal.pone.0119219⟩ Journal articles hal-01225074v1
	A new look at ocean carbon remineralization for estimating deepwater sequestration Lionel Guidi , Louis Legendre , Gabriel Reygondeau , Julia Uitz , Lars Stemmann Global Biogeochemical Cycles, 2015, 29 (7), pp.1044-1059. ⟨10.1002/2014GB005063⟩ Journal articles hal-03502734v1
	Open science resources for the discovery and analysis of Tara Oceans data Stéphane Pesant , Fabrice Not , Marc Picheral , Stefanie Kandels-Lewis , Noan Le Bescot Scientific Data , 2015, 2, pp.150023. ⟨10.1038/sdata.2015.23⟩ Journal articles hal-01253984v1
	Eukaryotic plankton diversity in the sunlit ocean Noan Le Bescot , Ian Probert , Margaux Carmichael , Julie Poulain , Sarah Romac Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩ Journal articles hal-01253979v1
	Individual shrinking to enhance population survival: quantifying the reproductive and metabolic expenditures of a starving jellyfish, Pelagia noctiluca Martin K. S. Lilley , Amanda Elineau , Martina Ferraris , Alain Thiéry , Lars Stemmann Journal of Plankton Research, 2014, 36 (6), pp.1585-1597. ⟨10.1093/plankt/fbu079⟩ Journal articles hal-03502757v1
	Rapid formation of large aggregates during the spring bloom of Kerguelen Island: observations and model comparisons M.-P Jouandet , George A Jackson , F Carlotti , M Picheral , L Stemmann Biogeosciences, 2014, 11 (16), pp.4393-4406. ⟨10.5194/bg-11-4393-2014⟩ Journal articles hal-01308018v1
	Cross-shelf variability in the Iberian Peninsula Upwelling System: Impact of a mesoscale filament Vincent Rossi , Véronique Garçon , Joëlle Tassel , Jean-Baptiste Romagnan , Lars Stemmann Continental Shelf Research, 2013, 59, pp.97-114. ⟨10.1016/j.csr.2013.04.008⟩ Journal articles hal-02296654v1
	Ecosystem function and particle flux dynamics across the Mackenzie Shelf (Beaufort Sea, Arctic Ocean): an integrative analysis of spatial variability and biophysical forcings A. Forest , M. Babin , L. Stemmann , M. Picheral , M. Sampei Biogeosciences, 2013, 10 (5), pp.2833-2866. ⟨10.5194/bg-10-2833-2013⟩ Journal articles hal-03502645v1
	Iron fertilization enhanced net community production but not downward particle flux during the Southern Ocean iron fertilization experiment LOHAFEX Patrick Martin , Michiel M. Rutgers van Der Loeff , Nicolas Cassar , Pieter Vandromme , Francesco d'Ovidio Global Biogeochemical Cycles, 2013, 27, pp.871-881. ⟨10.1002/gbc.20077⟩ Journal articles hal-01445819v1
	Size distribution of particles and zooplankton across the shelf-basin system in southeast Beaufort Sea: combined results from an Underwater Vision Profiler and vertical net tows A. Forest , L. Stemmann , M. Picheral , L. Burdorf , D. Robert Biogeosciences, 2012, 9 (4), pp.1301-1320. ⟨10.5194/bg-9-1301-2012⟩ Journal articles hal-03502681v1
	Does eddy-eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre? Lionel Guidi , Paulo H. R. Calil , Solange Duhamel , Karin M. Bjoerkman , Scott C. Doney Journal of Geophysical Research: Biogeosciences, 2012, 117, ⟨10.1029/2012JG001984⟩ Journal articles hal-03502664v1
	Optical imaging of mesopelagic particles indicates deep carbon flux beneath a natural iron-fertilized bloom in the Southern Ocean Marie-Paule Jouandet , Thomas W. Trull , Lionel Guidi , Marc Picheral , Friederike Ebersbach Limnology and Oceanography, 2011, 56 (3), pp.1130-1140. ⟨10.4319/lo.2011.56.3.1130⟩ Journal articles hal-03502030v1
	Inter-annual fluctuations of zooplankton communities in the Bay of Villefranche-sur-mer from 1995 to 2005 (Northern Ligurian Sea, France) P. Vandromme , L. Stemmann , L. Berline , S. Gasparini , L. Mousseau Biogeosciences, 2011, 8 (11), pp.3143-3158. ⟨10.5194/bg-8-3143-2011⟩ Journal articles hal-03502045v1
	Zooplankton long-term changes in the NW Mediterranean Sea: Decadal periodicity forced by winter hydrographic conditions related to large-scale atmospheric changes? Carmen Garcia-Comas , Lars Stemmann , Frederic Ibanez , Léo Berline , Maria Grazia Mazzocchi Journal of Marine Systems, 2011, 87 (3-4), pp.216-226. ⟨10.1016/j.jmarsys.2011.04.003⟩ Journal articles hal-03502020v1
	Census and analysis of zooplankton metadata of the French coasts since 1955 Virginie Raybaud , D. Heroin , Thomas Raud , Jean-Michel Brylinski , L. Stemmann Journal of Oceanography, 2011, 4, pp.11-37 Journal articles hal-00759286v1
	Marine ecosystems’ responses to climatic and anthropogenic forcings in the Mediterranean Cecile Guieu , Xavier Durrieu de Madron , Pascal Conan , Frédéric Gazeau , Claude Estournel Progress in Oceanography, 2011, 91 (2), pp.97-166. ⟨10.1016/j.pocean.2011.02.003⟩ Journal articles hal-03452771v1
	Impact of appendicularians on detritus and export fluxes: a model approach at DyFAMed site L. Berline , Lars Stemmann , Marcello Vichi , Fabien Lombard , Gaby Gorsky Journal of Plankton Research, 2010, ⟨10.1093/plankt/FBQ163⟩ Journal articles hal-00655066v1
	The Underwater Vision Profiler 5: An advanced instrument for high spatial resolution studies of particle size spectra and zooplankton Marc Picheral , Lionel Guidi , Lars Stemmann , David M. Karl , Ghizlaine Iddaoud Limnology and Oceanography: Methods, 2010, 8, pp.462-473. ⟨10.4319/lom.2010.8.462⟩ Journal articles hal-03502058v1
	Digital zooplankton image analysis using the ZooScan integrated system Stephane Gasparini , Lars Stemmann , Jean-Baptiste Romagnan , Alison Cawood , Stephane Pesant Journal of Plankton Research, 2010, 32 (3), pp.285-303. ⟨10.1093/plankt/fbp124⟩ Journal articles hal-03502074v1
	Experimental and modeling evidence of appendicularian-ciliate interactions Fabien Lombard , Damien Eloire , Angélique Gobet , Lars Stemmann , John R. Dolan Limnology and Oceanography, 2010, 55 (1), pp.77 - 90. ⟨10.4319/lo.2010.55.1.0077⟩ Journal articles hal-01893823v1
	Effects of phytoplankton community on production, size and export of large aggregates: A world-ocean analysis Lionel Guidi , Lars Stemmann , George A. Jackson , Frederic Ibanez , Hervé Claustre Limnology and Oceanography, 2009, 54 (6), pp.1951-1963. ⟨10.4319/lo.2009.54.6.1951⟩ Journal articles hal-03505004v1
	Relationship between particle size distribution and flux in the mesopelagic zone Lionel Guidi , George A. Jackson , Lars Stemmann , Juan Carlos Miquel , Marc Picheral Deep Sea Research Part I: Oceanographic Research Papers, 2008, 55 (10), pp.1364-1374. ⟨10.1016/j.dsr.2008.05.014⟩ Journal articles hal-03494337v1
	Distribution of net-collected planktonic cnidarians along the northern Mid-Atlantic Ridge and their associations with the main water masses A. Hosia , L. Stemmann , M. Youngbluth Deep Sea Research Part II: Topical Studies in Oceanography, 2008, 55 (1-2), pp.106-118. ⟨10.1016/j.dsr2.2007.09.007⟩ Journal articles hal-03494360v1
	Global zoogeography of fragile macrozooplankton in the upper 100-1000 m inferred from the underwater video profiler Lars Stemmann , Marsh Youngbluth , Kevin Robert , Aino Hosia , Marc Picheral ICES JOURNAL OF MARINE SCIENCE, 2008, 65 (3), pp.433-442. ⟨10.1093/icesjms/fsn010⟩ Journal articles hal-03494350v1
	Vertical distribution (0-1000 m) of macrozooplankton, estimated using the Underwater Video Profiler, in different hydrographic regimes along the northern portion of the Mid-Atlantic Ridge L. Stemmann , A. Hosia , M. J. Youngbluth , H. Soiland , M. Picheral Deep Sea Research Part II: Topical Studies in Oceanography, 2008, 55 (1-2), pp.94-105. ⟨10.1016/j.dsr2.2007.09.019⟩ Journal articles hal-03494359v1
	Contrasting distribution of aggregates >100 µm in the upper kilometre of the South-Eastern Pacific L. Guidi , G. Gorsky , Hervé Claustre , M. Picheral , L. Stemmann Biogeosciences Discussions, 2008, 5 (1), pp.871-901 Journal articles hal-00330289v1
	Distribution and fluxes of aggregates > 100 mu m in the upper kilometer of the South-Eastern Pacific J. C. Miquel , M. Picheral , L. Stemmann , Lionel Guidi , G. Gorsky Biogeosciences, 2008, 5 (5), pp.1361-1372. ⟨10.5194/bg-5-1361-2008⟩ Journal articles hal-03494358v1
	Effects of frontal processes on marine aggregate dynamics and fluxes: An interannual study in a permanent geostrophic front (NW Mediterranean) Lars Stemmann , Louis Prieur , Louis Legendre , Isabelle Taupier-Letage , Marc Picheral Journal of Marine Systems, 2008, 70 (1-2), pp.1-20. ⟨10.1016/j.jmarsys.2007.02.014⟩ Journal articles hal-03494353v1
	Volume distribution for particles between 3.5 to 2000 µm in the upper 200 m region of the South Pacific Gyre L. Stemmann , D. Eloire , A. Sciandra , G. A. Jackson , L. Guidi Biogeosciences, 2008, 5 (2), pp.299-310. ⟨10.5194/bg-5-299-2008⟩ Journal articles hal-00330349v2
	Vertical distribution and relative abundance of gelatinous zooplankton, in situ observations near the Mid-Atlantic Ridge M. Youngbluth , T. Sornes , A. Hosia , L. Stemmann Deep Sea Research Part II: Topical Studies in Oceanography, 2008, 55 (1-2), pp.119-125. ⟨10.1016/j.dsr2.2007.10.002⟩ Journal articles hal-03494361v1
	Vertical distribution of aggregates (> 110 mu m) and mesoscale activity in the northeastern Atlantic: Effects on the deep vertical export of surface carbon Lionel Guidi , Lars Stemmann , Louis Legendre , Marc Picheral , Louis Prieur Limnology and Oceanography, 2007, 52 (1), pp.7-18. ⟨10.4319/lo.2007.52.1.0007⟩ Journal articles hal-03504960v1
	A vertical model of particle size distributions and fluxes in the midwater column that includes biological and physical processes - Part II: application to a three year survey in the NW Mediterranean Sea L Stemmann , Ga Jackson , G Gorsky Deep Sea Research Part I: Oceanographic Research Papers, 2004, 51 (7), pp.885-908. ⟨10.1016/j.dsr.2004.03.002⟩ Journal articles hal-03506669v1
	A vertical model of particle size distributions and fluxes in the midwater column that includes biological and physical processes - Part I: model formulation L Stemmann , Ga Jackson , D Ianson Deep Sea Research Part I: Oceanographic Research Papers, 2004, 51 (7), pp.865-884. ⟨10.1016/j.dsr.2004.03.001⟩ Journal articles hal-03506668v1
	Pulsed remineralisation in the northwestern Mediterranean Sea: a hypothesis Michel Denis , Valérie Martin , André Momzikoff , Geneviève Gondry , Lars Stemmann Journal of Marine Systems, 2003, 39, pp.19-41. ⟨10.1016/S0924-7963(02)00244-0⟩ Journal articles hal-00770806v1
	Marine snow latitudinal distribution in the equatorial Pacific along 180 degrees G Gorsky , R Le Borgne , M Picheral , L Stemmann Journal of Geophysical Research. Oceans, 2003, 108 (C12), ⟨10.1029/2001JC001064⟩ Journal articles hal-03482948v1
	Four-year study of large-particle vertical distribution (0-1000 m) in the NW Mediterranean in relation to hydrology, phytoplankton, and vertical flux L Stemmann , G Gorsky , Jc Marty , M Picheral , Jc Miquel Deep Sea Research Part II: Topical Studies in Oceanography, 2002, 49 (11), pp.2143-2162. ⟨10.1016/S0967-0645(02)00032-2⟩ Journal articles hal-03483025v1
	Large particulate matter in the Western Mediterranean I. LPM distribution related to mesoscale hydrodynamics G Gorsky , L Prieur , I. Taupier-Letage , L Stemmann , M Picheral Journal of Marine Systems, 2002, 33, pp.289-311. ⟨10.1016/S0924-7963(02)00063-5⟩ Journal articles hal-03482989v1
	Use of the Underwater Video Profiler for the study of aggregate dynamics in the North Mediterranean G Gorsky , M Picheral , L Stemmann ESTUARINE COASTAL AND SHELF SCIENCE, 2000, 50 (1), pp.121-128. ⟨10.1006/ecss.1999.0539⟩ Journal articles hal-03483093v1
	Diel variation in the vertical distribution of particulate matter (> 0.15 mm) in the NW Mediterranean Sea investigated with the Underwater Video Profiler L Stemmann , M Picheral , G Gorsky Deep Sea Research Part I: Oceanographic Research Papers, 2000, 47 (3), pp.505-531. ⟨10.1016/S0967-0637(99)00100-4⟩ Journal articles hal-03483088v1

	IMAGED-BASED ANALYSIS OF THE GLOBAL DISTRIBUTION OF ZOOPLANKTON BIOMASS THROUGH A HABITAT MODELLING APPROACH T.Panaïotis Drago , J.O. Irisson , M. Babin , T. Biard , F. Carlotti 2021 Other publications hal-04023030v1
	Long term evolution of small pelagics in the Gulf of Lion Guillaume Feuilloley , Jean‐marc Fromentin , Stemmann Lars , Hervé Demarcq , Claire Saraux 2019 Other publications hal-04023032v1
	Global in situ imaging of large plankton and particles by the Underwater Vision Profiler in the upper kilometre of all océans L Stemmann 2018 Other publications hal-04023033v1
	Contribution of the jellyfish Pelagia Noctiluca to carbon export in the Mediterranean Sea S. Ramondenc , F. Delahaye , D. Eveillard , L. Stemmann , L. Guidi 2017 Other publications hal-04023034v1

	Zooplancton : macroplancton et séries à long terme Paul Nival , Fabien Lombard , Lars Stemmann , Jacqueline Goy , Janine Cuzin Chistophe Migon; Antoine Sciandra; Paul Nival. La mer Méditerranée face au changement global 2. Dynamique biologique et évolution de la mer Ligure, ISTE Editions Ltd, pp.115-154, 2021, 978-1-78405-733-6 Book sections hal-03200031v1
	Zooplankton II. Macroplankton and Long-Term Series Paul Nival , Fabien Lombard , Janine Cuzin , Jacqueline Goy , Lars Stemmann Christophe Migon; Antoine Sciandra; Paul Nival. The Mediterranean Sea in the Era of Global Change 2. 30 Years of Multidisciplinary Study of the Ligurian Sea, ISTE Ltd; John Wiley & Sons, Inc., pp.109-146, 2020, 978-1-78630-586-2. ⟨10.1002/9781119704782.ch4⟩ Book sections hal-03199632v1
	Plankton and Particle Size and Packaging: From Determining Optical Properties to Driving the Biological Pump L. Stemmann , E. Boss Carlson, CA and Giovannoni, SJ. ANNUAL REVIEW OF MARINE SCIENCE, VOL 4, 4, pp.263-290, 2012, Annual Review of Marine Science, 978-0-8243-4504-4. ⟨10.1146/annurev-marine-120710-100853⟩ Book sections hal-03502686v1

	Ubiquity of inverted ’gelatinous’ ecosystem pyramids in the global ocean Lombard Fabien , Guidi Lionel , Manoela Brandão , Coelho Luis Pedro , Colin Sébastien 2024 Preprints, Working Papers, ... hal-04670798v1
	Insights into biotic and abiotic modulation of ocean mesopelagic communities Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Karlusich 2022 Preprints, Working Papers, ... hal-03166899v1
	Constraining the ocean’s biological pump with in situ optical observations and supervised learning. Part 1:particle size distributions Daniel Clements , Simon Yang , Thomas Weber , Andrew Mcdonnell , Rainer Kiko 2021 Preprints, Working Papers, ... hal-03483905v1

	Functional trait-based approaches as a common framework for freshwater and marine ecologists Severine Martini , Floriane Larras , Aurélien Boyé , Emile Faure , Nicole Aberle 11th Symposium for European Freshwater Sciences (SEFS), Jun 2019, Zagreb, Croatia Conference poster hal-03232606v1

lars stemmann

Publications

Morphological diversity increases with decreasing resources along a zooplankton time series

A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits

Morphological diversity increases with oligotrophy along a zooplankton time-series

Boosting careers for a blue future: the new specialization track on “Ocean Literacy, Education and Communication" as part of the International Master in Marine Biological Resources, IMBRSea

Benchmark of image classification using several large plankton datasets: Convolutional Neural Networks improve detection of rare taxa

UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms

Typology of Plankton Communities seen by In Situ Imaging, from the Epi to the Mesopelagic Layers of the Global Ocean.

Unravelling the dynamics of pelagic ecosystems by quantitative observation of morphological attributes of marine snow: a case study in the Arctic

Coordinating Efforts to Define Marine Plankton Imagery Data and Metadata Best Practices and Standards

Morphological diversity increases with oligotrophy along a zooplankton time series

Towards a global in situ monitoring of plankton using imaging systems: lessons learnt from the past 10 years of observation in Europe

Morphological diversity increases with oligotrophy along a zooplankton time series

Global in-situ imaging of large plankton and particles by the Underwater Vision Profiler in the upper kilometer of all oceans

Spatio-temporal variations of the planktonic communities in a North Atlantic Marine Protected Area and their potential links with Sardina pilchardus (Walbaum, 1792) catches

Calcifying pteropod time series provides a baseline against which to measure local environmental change

DECADAL VARIABILITY OF ZOOPLANKTON COMMUNITIES OF THE NW MEDITERRANEAN SEA (WEEKLY SAMPLED FROM 1995 TO 2006) IN RELATION WITH CLIMATIC FORCING.

Global census of the significance of giant mesopelagic protists to the marine carbon and silicon cycles

First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices

Towards a distributed and operational pelagic imaging network

Ocean-wide comparisons of mesopelagic planktonic community structures

Structures of coexisting marine snow and zooplankton in coastal waters of Svalbard (European Arctic)

Morphological diversity increases with decreasing resources along a zooplankton time series

New Estimate of Organic Carbon Export From Optical Measurements Reveals the Role of Particle Size Distribution and Export Horizon

Monitoring and modelling marine zooplankton in a changing climate

Temporal fluctuations in zooplankton size, abundance, and taxonomic composition since 1995 in the North Western Mediterranean Sea

Priorities for ocean microbiome research

Machine learning techniques to characterize functional traits of plankton from image data

The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms

Constraining the Particle Size Distribution of Large Marine Particles in the Global Ocean With In Situ Optical Observations and Supervised Learning

Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5

Machine Learning for the Study of Plankton and Marine Snow from Images

Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning

Establishing Plankton Imagery Dataflows Towards International Biodiversity Data Aggregators

Macroscale patterns of oceanic zooplankton composition and size structure

Functional trait-based approaches as a common framework for aquatic ecologists

Marine snow morphology illuminates the evolution of phytoplankton blooms and determines their subsequent vertical export

Taxonomic and size structures of zooplankton communities in the fjords along the Atlantic water passage to the Arctic

Concomitant changes in the Environment and small pelagic fish community of the Gulf of Lions

Prediction of unprecedented biological shifts in the global ocean

Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Marine DNA viral macro- and microdiversity from Pole to Pole

The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area

Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Globally Consistent Quantitative Observations of Planktonic Ecosystems

Global Trends in Marine Plankton Diversity across Kingdoms of Life

Are tropical coastal reefs sinks or sources of mesozooplankton? A case study in a Brazilian marine protected area

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Particulate matter flux interception in oceanic mesoscale eddies by the polychaete Poeobius sp.

Exploring Microdiversity in Novel Kordia sp (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

Biogeography and diversity of Collodaria (Radiolaria) in the global ocean

New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Biological and physical influences on marine snowfall at the equator

Temporal Variability of Zooplankton (2000-2013) in the Levantine Sea: Significant Changes Associated to the 2005-2010 EMT-like Event?

In situ imaging reveals the biomass of giant protists in the global ocean

Proposition of indicators of anthropogenic pressure in the Bay of Toulon (Mediterranean Sea) based on zooplankton time-series

The wineglass effect shapes particle export to the deep ocean in mesoscale eddies

Plankton networks driving carbon export in the oligotrophic ocean

High frequency mesozooplankton monitoring: Can imaging systems and automated sample analysis help us describe and interpret changes in zooplankton community composition and size structure — An example from a coastal site

Nitrogen Fuelling of the Pelagic Food Web of the Tropical Atlantic

Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability

Synchronous marine pelagic regime shifts in the Northern Hemisphere

Optical techniques for remote and in-situ characterization of particles pertinent to GEOTRACES

Structure and function of the global ocean microbiome

Determinants of community structure in the global plankton interactome

Comprehensive Model of Annual Plankton Succession Based on the Whole-Plankton Time Series Approach

A new look at ocean carbon remineralization for estimating deepwater sequestration

Open science resources for the discovery and analysis of Tara Oceans data

Eukaryotic plankton diversity in the sunlit ocean

Individual shrinking to enhance population survival: quantifying the reproductive and metabolic expenditures of a starving jellyfish, Pelagia noctiluca

Rapid formation of large aggregates during the spring bloom of Kerguelen Island: observations and model comparisons

Cross-shelf variability in the Iberian Peninsula Upwelling System: Impact of a mesoscale filament

Ecosystem function and particle flux dynamics across the Mackenzie Shelf (Beaufort Sea, Arctic Ocean): an integrative analysis of spatial variability and biophysical forcings

Iron fertilization enhanced net community production but not downward particle flux during the Southern Ocean iron fertilization experiment LOHAFEX