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Extremely acidic proteomes and metabolic flexibility in bacteria and highly diversified archaea thriving in geothermal chaotropic brines
Ana Gutiérrez-Preciado
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Bledina Dede
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Brittany Baker
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Laura Eme
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David Moreira
et al.
Article dans une revue
hal-04782858
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Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution
Tom Williams
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Adrian Davin
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Lénárd Szánthó
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Alexandros Stamatakis
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Noah Wahl
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Article dans une revue
hal-04796828
v1
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Microbial Diversity and Open Questions about the Deep Tree of Life
Laura Eme
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Daniel Tamarit
Article dans une revue
hal-04796832
v1
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Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher
Robert Jones
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Alexander Tice
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Marek Eliáš
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Laura Eme
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Martin Kolísko
et al.
Article dans une revue
hal-04796821
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Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments
Brittany Baker
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Ana Gutiérrez-Preciado
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Álvaro Rodríguez del Río
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Charley Mccarthy
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Purificación López-García
et al.
Article dans une revue
hal-04782651
v1
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One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade
Jazmin Blaz
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Luis Javier Galindo
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Aaron Heiss
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Harpreet Kaur
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Guifré Torruella
et al.
Article dans une revue
hal-04384869
v1
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Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes
Laura Eme
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Daniel Tamarit
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Eva F Caceres
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Courtney W Stairs
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Valerie de Anda
et al.
Article dans une revue
hal-04289789
v1
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Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria
Lukáš V F Novák
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Sebastian C Treitli
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Jan Pyrih
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Paweł Hałakuc
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Shweta V Pipaliya
et al.
Article dans une revue
hal-04385954
v2
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Molecular and morphological characterization of four new ancyromonad genera and proposal for an updated taxonomy of the Ancyromonadida
Naoji Yubuki
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Guifré Torruella
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Luis Javier Galindo
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Aaron A Heiss
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Maria Cristina Ciobanu
et al.
Article dans une revue
hal-04272301
v1
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TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets
Xi Zhang
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Yining Hu
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Laura Eme
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Shinichiro Maruyama
,
Robert J.M. Eveleigh
et al.
Article dans une revue
hal-03800384
v1
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A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses
Daniel Tamarit
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Eva F. Caceres
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Mart Krupovic
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Reindert Nijland
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Laura Eme
et al.
Article dans une revue
pasteur-03711310
v1
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Independent Size Expansions and Intron Proliferation in Red Algal Plastid and Mitochondrial Genomes
Fabian van Beveren
,
Laura Eme
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Purificación López-García
,
Maria Ciobanu
,
David Moreira
Article dans une revue
hal-03800403
v1
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Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria
Sergio A Muñoz-Gómez
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Edward Susko
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Kelsey Williamson
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Laura Eme
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Claudio H. Slamovits
et al.
Article dans une revue
hal-03847570
v1
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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships
Alexander K. Tice
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David Zihala
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Tomáš Pánek
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Robert E Jones
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Eric D Salomaki
et al.
Article dans une revue
hal-03368434
v2
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The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba
Vojtěch Žárský
,
Vladimír Klimeš
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Jan Pačes
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Čestmír Vlček
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Miluše Hradilová
et al.
Article dans une revue
hal-03368460
v1
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Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes
Courtney W Stairs
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Petr Táborský
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Eric D Salomaki
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Martin Kolisko
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Tomáš Pánek
et al.
Article dans une revue
hal-03461937
v1
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Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species
Ludek Koreny
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Mohammad Zeeshan
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Konstantin Barylyuk
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Eelco C Tromer
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Jolien J E van Hooff
et al.
Article dans une revue
hal-03368636
v1
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Releasing uncurated datasets is essential for reproducible phylogenomics
Eric Salomaki
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Laura Eme
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Matthew Brown
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Martin Kolisko
Article dans une revue
hal-03368653
v1
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Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes
Shannon Sibbald
,
Laura Eme
,
John Archibald
,
Andrew Roger
Article dans une revue
hal-03368658
v1
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Chlamydial contribution to anaerobic metabolism during eukaryotic evolution
Courtney Stairs
,
Jennah Dharamshi
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Daniel Tamarit
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Laura Eme
,
Steffen Jørgensen
et al.
Article dans une revue
hal-04384939
v1
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Marine Sediments Illuminate Chlamydiae Diversity and Evolution
Jennah Dharamshi
,
Daniel Tamarit
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Laura Eme
,
Courtney Stairs
,
Joran Martijn
et al.
Article dans une revue
hal-03368662
v1
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Asgard archaea capable of anaerobic hydrocarbon cycling
Kiley Seitz
,
Nina Dombrowski
,
Laura Eme
,
Anja Spang
,
Jonathan Lombard
et al.
Article dans une revue
hal-03368676
v1
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Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism
Anja Spang
,
Courtney Stairs
,
Nina Dombrowski
,
Laura Eme
,
Jonathan Lombard
et al.
Article dans une revue
hal-03368673
v1
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A natural toroidal microswimmer with a rotary eukaryotic flagellum
Sebastian Hess
,
Laura Eme
,
Andrew Roger
,
Alastair Simpson
Article dans une revue
hal-03368670
v1
|
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PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics
Max E Schön
,
Laura Eme
,
Thijs J G Ettema
Article dans une revue
hal-03368665
v1
|
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Nephromyces represents a diverse and novel lineage of the Apicomplexa that has retained apicoplasts
Sergio Muñoz-Gómez
,
Keira Durnin
,
Laura Eme
,
Christopher Paight
,
Christopher Lane
et al.
Article dans une revue
hal-03368668
v1
|
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The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion
Anna Karnkowska
,
Sebastian Treitli
,
Ondřej Brzoň
,
Lukáš Novák
,
Vojtěch Vacek
et al.
Article dans une revue
hal-03368666
v1
|
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Demystifying Eukaryote Lateral Gene Transfer (Response to Martin 2017 DOI: 10.1002/bies.201700115)
Michelle Leger
,
Laura Eme
,
Courtney Stairs
,
Andrew Roger
Article dans une revue
hal-03368697
v1
|
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Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids
Ugo Cenci
,
Shannon Sibbald
,
Bruce Curtis
,
Ryoma Kamikawa
,
Laura Eme
et al.
Article dans une revue
hal-02046523
v1
|
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Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes
Gordon Lax
,
Yana Eglit
,
Laura Eme
,
Erin Bertrand
,
Andrew Roger
et al.
Article dans une revue
hal-03368693
v1
|
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The eukaryotic ancestor shapes up
Laura Eme
,
Thijs Ettema
Article dans une revue
hal-03368695
v1
|
|
Microbial eukaryotes have adapted to hypoxia by horizontal acquisitions of a gene involved in rhodoquinone biosynthesis
Courtney Stairs
,
Laura Eme
,
Sergio Muñoz-Gómez
,
Alejandro Cohen
,
Graham Dellaire
et al.
Article dans une revue
hal-03368699
v1
|
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Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis
Eleni Gentekaki
,
Bruce Curtis
,
Courtney Stairs
,
Vladimír Klimeš
,
Marek Eliáš
et al.
Article dans une revue
hal-01802863
v1
|
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated
Mathieu Groussin
,
Bastien Boussau
,
Gergely J Szollosi
,
Laura Eme
,
Manolo Gouy
et al.
Article dans une revue
hal-01913926
v1
|
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A Complex Cell Division Machinery Was Present in the Last Common Ancestor of Eukaryotes
Laura Eme
,
David Moreira
,
Emmanuel Talla
,
Céline Brochier-Armanet
Article dans une revue
hal-03368340
v1
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