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Laura Eme

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Publications

One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade

Jazmin Blaz , Luis Javier Galindo , Aaron Heiss , Harpreet Kaur , Guifré Torruella
Scientific Data , 2023, 10 (1), pp.603. ⟨10.1038/s41597-023-02488-2⟩
Journal articles hal-04384869v1
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Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria

Lukáš V F Novák , Sebastian C Treitli , Jan Pyrih , Paweł Hałakuc , Shweta V Pipaliya
PLoS Genetics, 2023, 19 (12), ⟨10.1371/journal.pgen.1011050⟩
Journal articles hal-04385954v2
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Molecular and morphological characterization of four new ancyromonad genera and proposal for an updated taxonomy of the Ancyromonadida

Naoji Yubuki , Guifré Torruella , Luis Javier Galindo , Aaron A Heiss , Maria Cristina Ciobanu
Journal of Eukaryotic Microbiology, 2023, 70 (6), pp.e12997. ⟨10.1111/jeu.12997⟩
Journal articles hal-04272301v1
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Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes

Laura Eme , Daniel Tamarit , Eva F Caceres , Courtney W Stairs , Valerie de Anda
Nature, 2023, 618 (7967), pp.992-999. ⟨10.1038/s41586-023-06186-2⟩
Journal articles hal-04289789v1
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TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets

Xi Zhang , Yining Hu , Laura Eme , Shinichiro Maruyama , Robert J.M. Eveleigh
STAR Protocols, 2022, 3 (1), pp.101175. ⟨10.1016/j.xpro.2022.101175⟩
Journal articles hal-03800384v1
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A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses

Daniel Tamarit , Eva F. Caceres , Mart Krupovic , Reindert Nijland , Laura Eme
Nature Microbiology, 2022, 7, pp.948-952. ⟨10.1038/s41564-022-01122-y⟩
Journal articles pasteur-03711310v1
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Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria

Sergio A Muñoz-Gómez , Edward Susko , Kelsey Williamson , Laura Eme , Claudio H. Slamovits
Nature Ecology & Evolution, 2022, 6, pp.253-262. ⟨10.1038/s41559-021-01638-2⟩
Journal articles hal-03847570v1
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Independent Size Expansions and Intron Proliferation in Red Algal Plastid and Mitochondrial Genomes

Fabian van Beveren , Laura Eme , Purificación López-García , Maria Ciobanu , David Moreira
Genome Biology and Evolution, 2022, 14 (4), ⟨10.1093/gbe/evac037⟩
Journal articles hal-03800403v1
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The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba

Vojtěch Žárský , Vladimír Klimeš , Jan Pačes , Čestmír Vlček , Miluše Hradilová
Molecular Biology and Evolution, 2021, 38 (6), pp.20. ⟨10.1093/molbev/msab020⟩
Journal articles hal-03368460v1
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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

Alexander K. Tice , David Zihala , Tomáš Pánek , Robert E Jones , Eric D Salomaki
Journal articles hal-03368434v2
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Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes

Courtney W Stairs , Petr Táborský , Eric D Salomaki , Martin Kolisko , Tomáš Pánek
Current Biology - CB, 2021, ⟨10.1016/j.cub.2021.10.010⟩
Journal articles hal-03461937v1
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Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species

Ludek Koreny , Mohammad Zeeshan , Konstantin Barylyuk , Eelco C Tromer , Jolien J E van Hooff
Journal articles hal-03368636v1

Marine Sediments Illuminate Chlamydiae Diversity and Evolution

Jennah Dharamshi , Daniel Tamarit , Laura Eme , Courtney Stairs , Joran Martijn
Current Biology - CB, 2020, 30 (6), pp.1032-+. ⟨10.1016/j.cub.2020.02.016⟩
Journal articles hal-03368662v1

Chlamydial contribution to anaerobic metabolism during eukaryotic evolution

Courtney Stairs , Jennah Dharamshi , Daniel Tamarit , Laura Eme , Steffen Jørgensen
Science Advances , 2020, 6 (35), ⟨10.1126/sciadv.abb7258⟩
Journal articles hal-04384939v1

Releasing uncurated datasets is essential for reproducible phylogenomics

Eric Salomaki , Laura Eme , Matthew Brown , Martin Kolisko
Nature Ecology & Evolution, 2020, 4 (11), pp.1435-1437. ⟨10.1038/s41559-020-01296-w⟩
Journal articles hal-03368653v1
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Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes

Shannon Sibbald , Laura Eme , John Archibald , Andrew Roger
Trends in Parasitology, 2020, 36 (11), pp.927-941. ⟨10.1016/j.pt.2020.07.014⟩
Journal articles hal-03368658v1

The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion

Anna Karnkowska , Sebastian Treitli , Ondřej Brzoň , Lukáš Novák , Vojtěch Vacek
Molecular Biology and Evolution, 2019, 36 (10), pp.2292-2312. ⟨10.1093/molbev/msz147⟩
Journal articles hal-03368666v1

Nephromyces represents a diverse and novel lineage of the Apicomplexa that has retained apicoplasts

Sergio Muñoz-Gómez , Keira Durnin , Laura Eme , Christopher Paight , Christopher Lane
Genome Biology and Evolution, 2019, ⟨10.1093/gbe/evz155⟩
Journal articles hal-03368668v1

Asgard archaea capable of anaerobic hydrocarbon cycling

Kiley Seitz , Nina Dombrowski , Laura Eme , Anja Spang , Jonathan Lombard
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-09364-x⟩
Journal articles hal-03368676v1

Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism

Anja Spang , Courtney Stairs , Nina Dombrowski , Laura Eme , Jonathan Lombard
Nature Microbiology, 2019, 4 (7), pp.1138-1148. ⟨10.1038/s41564-019-0406-9⟩
Journal articles hal-03368673v1
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PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics

Max E Schön , Laura Eme , Thijs J G Ettema
Journal articles hal-03368665v1

A natural toroidal microswimmer with a rotary eukaryotic flagellum

Sebastian Hess , Laura Eme , Andrew Roger , Alastair Simpson
Nature Microbiology, 2019, 4 (10), pp.1620-1626. ⟨10.1038/s41564-019-0478-6⟩
Journal articles hal-03368670v1

Demystifying Eukaryote Lateral Gene Transfer (Response to Martin 2017 DOI: 10.1002/bies.201700115)

Michelle Leger , Laura Eme , Courtney Stairs , Andrew Roger
BioEssays, 2018, 40 (5), pp.1700242. ⟨10.1002/bies.201700242⟩
Journal articles hal-03368697v1

Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes

Gordon Lax , Yana Eglit , Laura Eme , Erin Bertrand , Andrew Roger
Nature, 2018, 564 (7736), pp.410-414. ⟨10.1038/s41586-018-0708-8⟩
Journal articles hal-03368693v1
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Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

Ugo Cenci , Shannon Sibbald , Bruce Curtis , Ryoma Kamikawa , Laura Eme
BMC Biology, 2018, 16 (1), pp.137. ⟨10.1186/s12915-018-0593-5⟩
Journal articles hal-02046523v1

Microbial eukaryotes have adapted to hypoxia by horizontal acquisitions of a gene involved in rhodoquinone biosynthesis

Courtney Stairs , Laura Eme , Sergio Muñoz-Gómez , Alejandro Cohen , Graham Dellaire
Journal articles hal-03368699v1

The eukaryotic ancestor shapes up

Laura Eme , Thijs Ettema
Nature, 2018, 562 (7727), pp.352-353. ⟨10.1038/d41586-018-06868-2⟩
Journal articles hal-03368695v1
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Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

Eleni Gentekaki , Bruce Curtis , Courtney Stairs , Vladimír Klimeš , Marek Eliáš
PLoS Biology, 2017, 15 (9), pp.e2003769. ⟨10.1371/journal.pbio.2003769⟩
Journal articles hal-01802863v1
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

Mathieu Groussin , Bastien Boussau , Gergely J Szollosi , Laura Eme , Manolo Gouy
Molecular Biology and Evolution, 2016, 33 (2), pp.305 - 310. ⟨10.1093/molbev/msv249⟩
Journal articles hal-01913926v1
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A Complex Cell Division Machinery Was Present in the Last Common Ancestor of Eukaryotes

Laura Eme , David Moreira , Emmanuel Talla , Céline Brochier-Armanet
PLoS ONE, 2009, 4 (4), pp.e5021. ⟨10.1371/journal.pone.0005021⟩
Journal articles hal-03368340v1

Archaea

Nina Dombrowski , Tara Mahendrarajah , Sarah T Gross , Laura Eme , Anja Spang
Lorrence H Green, Emanuel Goldman. Practical Handbook of Microbiology, CRC Press, 2021, 9780367567644. ⟨10.1201/9781003099277⟩
Book sections hal-03368633v1