Laurent Duret

Publications

Article dans une revue (159)

Variation in the fitness impact of translationally optimal codons among animals Florian Bénitière,Tristan Lefébure,Laurent Duret Genome Research, 2025, 35 (3), pp.446-458. ⟨10.1101/gr.279837.124⟩ Article dans une revue hal-04737716v1
PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids fish Marie Raynaud,Paola Sanna,Julien Joseph,Julie A. J. Clément,Yukiko Imaiet al. PLoS Biology, 2025, 23 (1), pp.e3002950. ⟨10.1371/journal.pbio.3002950⟩ Article dans une revue hal-04880059v1
GTDrift: a resource for exploring the interplay between genetic drift, genomic and transcriptomic characteristics in eukaryotes Florian Bénitière,Laurent Duret,Anamaria Necsulea NAR Genomics and Bioinformatics, 2024, 6 (2), pp.lqae064. ⟨10.1093/nargab/lqae064⟩ Article dans une revue hal-04609512v1
Random genetic drift sets an upper limit on mRNA splicing accuracy in metazoans Florian Bénitière,Anamaria Necsulea,Laurent Duret eLife, 2024, 13, pp.RP93629. ⟨10.7554/eLife.93629.3⟩ Article dans une revue hal-04258621v1
High prevalence of PRDM9-independent recombination hotspots in placental mammals Julien Joseph,Djivan Prentout,Alexandre Laverré,Théo Tricou,Laurent Duret Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (23), pp.e2401973121. ⟨10.1073/pnas.2401973121⟩ Article dans une revue hal-04604269v1
Bridging the gap between the evolutionary dynamics and the molecular mechanisms of meiosis : a model based exploration of the PRDM9 intra-genomic Red Queen Alice Genestier,Laurent Duret,Nicolas Lartillot PLoS Genetics, 2024, 20 (5), pp.e1011274. ⟨10.1371/journal.pgen.1011274⟩ Article dans une revue hal-04272303v2
Population designations in biomedical research: limitations and perspectives Caroline Gombault,Guillaume Grenet,Laure Ségurel,Laurent Duret,François Gueyffieret al. HLA: Immune Response Genetics, 2023, 101 (1), pp.3-15. ⟨10.1111/tan.14852⟩ Article dans une revue hal-03829218v1
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes Diamantis Sellis,Frédéric Guérin,Olivier Arnaiz,Walker Pett,Emmanuelle Leratet al. PLoS Biology, 2021, 19 (7), pp.e3001309. ⟨10.1371/journal.pbio.3001309⟩ Article dans une revue hal-03366429v1
DILS: Demographic inferences with linked selection by using ABC Christelle Fraïsse,Iva Popovic,Clément Mazoyer,Bruno Spataro,Stephane Delmotteet al. Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13323⟩ Article dans une revue hal-03156998v1
Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest Georgios Koutsovoulos,Eder Marques,Marie Jeanne Arguel,Laurent Duret,Andressa C. Z. Machadoet al. Evolutionary Applications, 2020, 13, pp.442-457. ⟨10.1111/eva.12881⟩ Article dans une revue hal-02444457v1
How consistent is RAD‐seq divergence with DNA‐barcode based clustering in insects? Marie Cariou,Hélène Henri,Sonia Martinez,Laurent Duret,Sylvain Charlat Molecular Ecology Resources, 2020, 20 (5), pp.1294-1298. ⟨10.1111/1755-0998.13178⟩ Article dans une revue hal-03017182v1
Evolutionary plasticity of mating-type determination mechanisms in Paramecium aurelia sibling species Natalia Sawka-Gądek,Alexey Potekhin,Deepankar Pratap Singh,Inessa Grevtseva,Olivier Arnaizet al. Genome Biology and Evolution, 2020, evaa258, ⟨10.1093/gbe/evaa258⟩ Article dans une revue hal-03102341v1
Bedrock radioactivity influences the rate and spectrum of mutation Nathanaëlle Saclier,Patrick Chardon,Florian Malard,Lara Konecny-Dupré,David Emeet al. eLife, 2020, 9, pp.e56830. ⟨10.7554/eLife.56830⟩ Article dans une revue hal-03051267v1
Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot Daphné Reiss,Gladys Mialdea,Vincent Miele,Damien M. de Vienne,Jean Peccoudet al. PLoS Genetics, 2019, 15 (2), pp.e1007965. ⟨10.1371/journal.pgen.1007965⟩ Article dans une revue hal-02140494v1
GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes Paulina Bolívar,Laurent Guéguen,Laurent Duret,Hans Ellegren,Carina Mugal Genome Biology, 2019, 20 (1), ⟨10.1186/s13059-018-1613-z⟩ Article dans une revue hal-02329971v1
Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints Florian Massip,Marc Laurent,Caroline Brossas,José miguel Fernández-Justel,Maria Gomezet al. Nucleic Acids Research, 2019, 47 (10), pp.5114-5125. ⟨10.1093/nar/gkz182⟩ Article dans une revue hal-02349718v1
Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion Nicolas Galtier,Camille Roux,Marjolaine Rousselle,Jonathan Romiguier,Emeric Figuetet al. Molecular Biology and Evolution, 2018, 35 (5), pp.1092 - 1103. ⟨10.1093/molbev/msy015⟩ Article dans une revue hal-01806906v1
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods Nathanaëlle Saclier,Clémentine François,Lara Konecny-Dupré,Nicolas Lartillot,Laurent Guéguenet al. Molecular Biology and Evolution, 2018, 35 (12), pp.2900-2912. ⟨10.1093/molbev/msy184⟩ Article dans une revue hal-01951580v1
Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition Laurent Guéguen,Laurent Duret Molecular Biology and Evolution, 2018, 35 (3), pp.734-742. ⟨10.1093/molbev/msx308⟩ Article dans une revue hal-02349724v1
PRDM9 Methyltransferase Activity Is Essential for Meiotic DNA Double-Strand Break Formation at Its Binding Sites Boubou Diagouraga,Julie Clément,L. Duret,Jan Kadlec,Bernard de Massyet al. Molecular Cell, 2018, 69 (5), pp.853 - 865.e6. ⟨10.1016/j.molcel.2018.01.033⟩ Article dans une revue hal-01730632v1
The Red Queen model of recombination hot-spot evolution: a theoretical investigation Thibault Latrille,L. Duret,Nicolas Lartillot Philosophical Transactions of the Royal Society B: Biological Sciences, 2017, ⟨10.1098/rstb.2016.0463⟩ Article dans une revue hal-01891448v1
In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites C Grey,Julie a J Clément,J Buard,B Leblanc,I Gutet al. Genome Research, 2017, 27 (4), pp.580-590. ⟨10.1101/gr.217240.116⟩ Article dans une revue hal-01505240v1
Less effective selection leads to larger genomes Tristan Lefébure,Claire Morvan,Florian Malard,Clémentine François,Lara Konecny-Dupréet al. Genome Research, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩ Article dans une revue hal-01544879v2
Recombination, meiotic expression and human codon usage F. Pouyet,Dominique Mouchiroud,L. Duret,M. Sémon eLife, 2017, 6, pp.e27344. ⟨10.7554/eLife.27344.001⟩ Article dans une revue hal-01943796v1
The fitness cost of mis-splicing is the main determinant of alternative splicing patterns Baptiste Saudemont,Alexandra Popa,Joanna Parmley,Vincent Rocher,Corinne Blugeonet al. Genome Biology, 2017, 18, pp.208. ⟨10.1186/s13059-017-1344-6⟩ Article dans une revue hal-02321589v1
The global impact of Wolbachia on mitochondrial diversity and evolution Marie Cariou,Laurent Duret,Sylvain Charlat Journal of Evolutionary Biology, 2017, 30 (12), pp.2204-2210. ⟨10.1111/jeb.13186⟩ Article dans une revue hal-02140486v1
How and how much does RAD-seq bias genetic diversity estimates? M. Cariou,L. Duret,S. Charlat BMC Evolutionary Biology, 2016, 16, pp.240. ⟨10.1186/s12862-016-0791-0⟩ Article dans une revue hal-02016409v1
No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes Clémentine François,L. Duret,Laurent Simon,Florian Mermillod-Blondin,Florian Malardet al. Molecular Biology and Evolution, 2016, 33 (10), pp.2605-2620. ⟨10.1093/molbev/msw131⟩ Article dans une revue hal-01370129v1
Occurrence of a non deleterious gene conversion event in the BRCA1 gene C. Tessereau,M. Leone,M. Buisson,L. Duret,O. M. Sinilnikovaet al. Genes, Chromosomes & Cancer, 2015, 54, pp.646-52. ⟨10.1002/gcc.22278⟩ Article dans une revue istex hal-02018994v1
GC-Content evolution in bacterial genomes: The biased gene conversion hypothesis expands Florent Lassalle,Séverine Périan,Thomas Bataillon,Xavier Nesme,L. Duretet al. PLoS Genetics, 2015, 11 (2), pp.1-20. ⟨10.1371/journal.pgen.1004941⟩ Article dans une revue hal-01198362v1
Quantification of GC-biased gene conversion in the human genome Sylvain Glemin,Peter F. Arndt,Messer W. Philip,Petrov M. Dmitri,Nicolas Galtieret al. Genome Research, 2015, 25 (8), pp.1215 - 1228. ⟨10.1101/gr.185488.114⟩ Article dans une revue hal-01900676v1
Optimization of multiplexed RADseq libraries using low-cost adaptors Hélène Henri,Marie Cariou,Gabriel Terraz,Sonia Martinez,Adil El Filaliet al. Genetica, 2015, 143 (2), pp.139-143. ⟨10.1007/s10709-015-9828-3⟩ Article dans une revue hal-03225202v1
Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome E. M. Kvikstad,L. Duret Molecular Biology and Evolution, 2014, 31, pp.23-36. ⟨10.1093/molbev/mst185⟩ Article dans une revue hal-02046828v1
Comparative population genomics in animals uncovers the determinants of genetic diversity Jonathan Romiguier,P Gayral,M Ballenghien,Arnaud Bernard,V Cahaiset al. Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩ Article dans une revue hal-01313724v1
The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes Y Lesecque,S. S. Glemin,N. Lartillot,D. Mouchiroud,L. Duret PLoS Genetics, 2014, 10, pp.e1004790. ⟨10.1371/journal.pgen.1004790⟩ Article dans une revue hal-02369480v1
The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells. Franck Picard,Jean-Charles Cadoret,Benjamin Audit,Alain Arneodo,Adriana A. Albertiet al. PLoS Genetics, 2014, 10 (5), pp.e1004282. ⟨10.1371/journal.pgen.1004282⟩ Article dans une revue hal-00995097v1
Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing C. Tessereau,Yann Lesecque,N. Monnet,M. Buisson,L. Barjhouxet al. Nucleic Acids Research, 2014, 42 (14), pp.9121-30. ⟨10.1093/nar/gku639⟩ Article dans une revue hal-02045532v1
XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells C. Vallot,C. Huret,Yann Lesecque,A. Resch,N. Oudrhiriet al. Nature Genetics, 2013, 45, pp.239--41. ⟨10.1038/ng.2530⟩ Article dans une revue hal-02446482v1
Eloge de l'ADN poubelle Laurent Duret,Sylvain Charlat Pour la science, 2013, 81, pp.10--17 Article dans une revue hal-02140476v1
GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance Y. Lesecque,D. Mouchiroud,L. Duret Molecular Biology and Evolution, 2013, 30, pp.1409--19. ⟨10.1093/molbev/mst056⟩ Article dans une revue hal-02281861v1
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization Marie Cariou,Laurent Duret,Sylvain Charlat Ecology and Evolution, 2013, 3 (4), pp.846-852. ⟨10.1002/ece3.512⟩ Article dans une revue hal-02140475v1
The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes S. B. Montgomery,D. L. Goode,E. Kvikstad,C. A. Albers,Z. D. Zhanget al. Genome Research, 2013, 23, pp.749--61. ⟨10.1101/gr.148718.112⟩ Article dans une revue hal-02282687v1
Genome-scale coestimation of species and gene trees. Bastien Boussau,Gergely J Szöllosi,L. Duret,Manolo Gouy,Eric Tannieret al. Genome Research, 2013, 23 (2), pp.323-330. ⟨10.1101/gr.141978.112⟩ Article dans une revue hal-00750148v1
High-quality sequence clustering guided by network topology and multiple alignment likelihood. Vincent Miele,Simon Penel,Vincent Daubin,Franck Picard,Daniel Kahnet al. Bioinformatics, 2012, 28 (8), pp.1078-85. ⟨10.1093/bioinformatics/bts098⟩ Article dans une revue hal-00965711v1
The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences. Olivier Arnaiz,Nathalie Mathy,Céline Baudry,Sophie Malinsky,Jean-Marc Auryet al. PLoS Genetics, 2012, 8 (10), pp.e1002984. ⟨10.1371/journal.pgen.1002984⟩ Article dans une revue hal-00759182v1
Evidence for Widespread GC-biased Gene Conversion in Eukaryotes Eugénie Pessia,Alexandra Popa,Sylvain Mousset,Clément Rezvoy,Laurent Duretet al. Genome Biology and Evolution, 2012, 4, pp.787-794. ⟨10.1093/gbe/evs052⟩ Article dans une revue hal-02282748v1
Meiotic recombination favors the spreading of deleterious mutations in human populations Anamaria Necsulea,L. Duret,Alexandra Popa,David N. Cooper,Peter Stentsonet al. Human Mutation, 2011, 32 (2), pp.198-206. ⟨10.1002/humu.21407⟩ Article dans une revue hal-00610795v1
Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes. Brian P. Cusack,Peter F. Arndt,L. Duret,Hugues Roest Crollius PLoS Genetics, 2011, 7 (10), pp.e1002276. ⟨10.1371/journal.pgen.1002276⟩ Article dans une revue inserm-00711772v1
Ultra-fast sequence clustering from similarity networks with SiLiX V. Miele,Simon Penel,L. Duret BMC Bioinformatics, 2011, 12(116), pp.1-9. ⟨10.1186/1471-2105-12-116⟩ Article dans une revue hal-00698365v1
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region Corinne Chureau,Sophie Chantalat,Antonio Romito,Angélique Galvani,Laurent Duretet al. Human Molecular Genetics, 2011, 20 (4), pp.705-718. ⟨10.1093/hmg/ddq516⟩ Article dans une revue hal-03030487v1
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region C. Chureau,S. Chantalat,A. Romito,A. Galvani,Laurent Duretet al. Human Molecular Genetics, 2011, 20, pp.705-718. ⟨10.1093/hmg/ddq516⟩ Article dans une revue hal-02299263v1
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations Thierry Rouxel,J. Grandaubert,Jk. Hane,Claire Hoede,Angela P. van de Wouwet al. Nature Communications, 2011, 2, pp.202. ⟨10.1038/ncomms1189⟩ Article dans une revue hal-00841751v1
Detecting positive selection within genomes: the problem of biased gene conversion A. Ratnakumar,Sylvain Mousset,S. Glémin,J. Berglund,N. Galtieret al. Philosophical Transactions of the Royal Society B: Biological Sciences, 2010, 365 (1552), pp.2571-2580. ⟨10.1098/rstb.2010.0007⟩ Article dans une revue hal-00539495v1
Paramecium tetraurelia: The Renaissance of an Early Unicellular Model J. Beisson,M. Bétermier,M-H. Bré,J. Cohen,S. Duharcourtet al. Emerging Model Organisms, 2010, 2010, pp.1-55 Article dans une revue hal-02305011v1
&lt;i&gt;Paramecium tetraurelia:&lt;/i&gt; The Renaissance of an Early Unicellular Model J. Beisson,M. Bétermier,M.-H. Bré,J. Cohen,S. Duharcourtet al. Emerging Model Organisms, 2010, 2010(1), pp.1-55 Article dans une revue hal-00539398v1
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia. Olivier Arnaiz,Jean-François Goût,Mireille Bétermier,Khaled Bouhouche,Jean Cohenet al. BMC Genomics, 2010, 11 (1), pp.547. ⟨10.1186/1471-2164-11-547⟩ Article dans une revue inserm-00617225v1
The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution Jean-François Gout,Daniel Kahn,Laurent Duret PLoS Genetics, 2010, 6 (5), pp.e1000944. ⟨10.1371/journal.pgen.1000944⟩ Article dans une revue hal-00539474v2
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes L. Duret,N. Galtier Annual Review of Genomics and Human Genetics, 2009, 10, pp.285-311 Article dans une revue hal-00428399v1
Mutation Patterns in the Human Genome:More Variable Than Expected L. Duret PLoS Biology, 2009, 7(2) e1000028, pp.803-806 Article dans une revue hal-00428326v1
Monoallelic expression and tissue specificity are associated with high crossover rates A. Necşulea,M. Sémon,L. Duret,L.D. Hurst Trends in Genetics, 2009, 25(12), pp.519-522 Article dans une revue hal-00539368v1
Databases of Homologous Gene Families for Comparative Genomics Simon Penel,Anne-Muriel Arigon Chifolleau,Jean-François Dufayard,Anne-Sophie Sertier,Vincent Daubinet al. BMC Bioinformatics, 2009, 10 (Suppl.6) :S3, pp.13. ⟨10.1186/1471-2105-10-S6-S3⟩ Article dans une revue lirmm-00400099v1
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates N. Galtier,L. Duret,S. Glémin,Vincent Ranwez Trends in Genetics, 2009, 25(1), pp.1-5 Article dans une revue hal-00428324v1
The relationship between DNA replication and human genome organization. Anamaria Necsulea,Claire Guillet,Jean-Charles Cadoret,Marie-Noëlle Prioleau,L. Duret Molecular Biology and Evolution, 2009, 26 (4), pp.729-741. ⟨10.1093/molbev/msn303⟩ Article dans une revue hal-00353551v1
L’évolution des chromosomes sexuels humains Gabriel Marais,L. Duret Biofutur, 2009, 304, pp.40-41 Article dans une revue hal-00539330v1
Comment on “Human-Specific Gain of Function in a Developmental Enhancer” L. Duret,N. Galtier Science, 2009, 323(5915), pp.714-715 Article dans une revue hal-00428327v1
Differential retention of metabolic genes following whole-genome duplication Jean-François Gout,Laurent Duret,Daniel Kahn Molecular Biology and Evolution, 2009, 26 (5), pp.1067-1072. ⟨10.1093/molbev/msp026⟩ Article dans une revue hal-00428358v2
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline. L. Duret,Jean Cohen,Claire Jubin,Philippe Dessen,Jean-François Goûtet al. Genome Research, 2008, 18 (4), pp.585-96. ⟨10.1101/gr.074534.107⟩ Article dans une revue hal-00282468v1
The Impact of Recombination on Nucleotide Substitutions in the Human Genome L. Duret,P.F. Arndt PLoS Genetics, 2008, 4, pp.1-19 Article dans une revue hal-00428172v1
ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in Ribosome biogenesis. Yohann Couté,Karine Kindbeiter,Stéphane Belin,Régis Dieckmann,L. Duretet al. Molecular and Cellular Proteomics, 2008, 7, epub ahead of print. ⟨10.1074/mcp.M700510-MCP200⟩ Article dans une revue hal-00196384v1
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes A. Studer,Simon Penel,L. Duret,M. Robinson-Rechavi Genome Research, 2008, 18, pp.1393-1402 Article dans une revue hal-00428199v1
Biased Gene Conversion and its Impact on Human Genome Evolution N. Galtier,L. Duret incollection, 2008, --, pp.273-277 Article dans une revue hal-00428241v1
Translational control of intron splicing in eukaryotes Olivier Jaillon,Khaled Bouhouche,Jean-François Gout,Jean-Marc Aury,Benjamin Noelet al. Nature, 2008, 451 (7176), pp.359-362. ⟨10.1038/nature06495⟩ Article dans une revue cea-00945555v1
Genome-wide studies highlight indirect links between human replication origins and gene regulation. Jean-Charles Cadoret,Françoise Meisch,Vahideh Hassan-Zadeh,Isabelle Luyten,Claire Guilletet al. Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (41), pp.15837-42. ⟨10.1073/pnas.0805208105⟩ Article dans une revue hal-00332341v1
Neutral Theory: The Null Hypothesis of Molecular Evolution L. Duret Nature Education, 2008, 1 (1), pp.803-806 Article dans une revue hal-00428242v1
Unexpected observations after mapping LongSAGE tags to the human genome C. Keime,M. Sémon,Dominique Mouchiroud,L. Duret,Olivier Gandrillon BMC Bioinformatics, 2007, 8, pp.1-11 Article dans une revue hal-00434613v1
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution Nicolas Galtier,L. Duret Trends in Genetics, 2007, 23 (6), pp.273-277. ⟨10.1016/j.tig.2007.03.011⟩ Article dans une revue istex halsde-00424420v1
Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies. Karine Buchet-Poyau,Julien Courchet,Hervé Le Hir,Bertrand Séraphin,Jean-Yves Scoazecet al. Nucleic Acids Research, 2007, 35 (4), pp.1289-300. ⟨10.1093/nar/gkm016⟩ Article dans une revue hal-00167447v1
Unexpected observations after mapping LongSAGE tags to the human genome. Céline Keime,Marie Sémon,Dominique Mouchiroud,Laurent Duret,Olivier Gandrillon BMC Bioinformatics, 2007, 8, pp.154. ⟨10.1186/1471-2105-8-154⟩ Article dans une revue hal-00193777v1
The GC Content of Primates and Rodents Genomes Is Not at Equilibrium : a Reply to Antezana L. Duret Journal of Molecular Evolution, 2006, --, pp.803-806 Article dans une revue hal-00427950v1
Insights into social insects from the genome of the honeybee &lt;i&gt;Apis mellifera&lt;/i&gt; G.M. Weinstock,G.E. Robinson,R.A. Gibbs,K.C. Worley,J.D. Evanset al. Nature, 2006, 443, pp.931-949 Article dans une revue hal-00428044v1
No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans M. Sémon,J.R. Lobry,L. Duret Molecular Biology and Evolution, 2006, 23, pp.523-529 Article dans une revue hal-00428013v1
GC Content Evolution of the Human and Mouse Genomes : Insights from the Study of Processed Pseudogenes in Regions of Different Recombination Rates. A. Khelifi,J. Meunier,L. Duret,Dominique Mouchiroud Journal of Molecular Evolution, 2006, 62, pp.745-752 Article dans une revue hal-00427980v1
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Jean-Marc Aury,Olivier Jaillon,L. Duret,Benjamin Noel,Claire Jubinet al. Nature, 2006, 444 (7116), pp.171-8. ⟨10.1038/nature05230⟩ Article dans une revue hal-00132091v1
The &lt;i&gt;Xist&lt;/i&gt; RNA Gene Evolved in Eutherians by Pseudogenization of a Protein-Coding Gene L. Duret,C. Chureau,S. Samain,J. Weissenbach,P. Avner Science, 2006, 312, pp.1653-1655 Article dans une revue hal-00427928v1
Evolutionary origin and maintenance of coexpressed gene clusters in mammals. M. Sémon,L. Duret Molecular Biology and Evolution, 2006, 23, pp.1715-1723 Article dans une revue hal-00428012v1
A new perspective on isochore evolution Laurent Duret,Adam Eyre-Walker,Nicolas Galtier Gene, 2006, 385, pp.71-74. ⟨10.1016/j.gene.2006.04.030⟩ Article dans une revue istex halsde-00340990v1
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Jean-François Dufayard,L. Duret,Simon Penel,Manolo Gouy,F. Rechenmannet al. Bioinformatics, 2005, 21 (11), pp.2596-603. ⟨10.1093/bioinformatics/bti325⟩ Article dans une revue hal-00427861v1
Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance M. Sémon,Dominique Mouchiroud,L. Duret Human Molecular Genetics, 2005, 14, pp.421-427 Article dans une revue hal-00427850v1
Natural history of the ERVWE1 endogenous retroviral locus B. Bonnaud,J. Beliaeff,O. Bouton,G. Oriol,L. Duretet al. Retrovirology, 2005, 2, pp.1-7 Article dans une revue hal-00427715v1
Les trésors cachés du génome humain L. Duret Pour la science, 2005, --, pp.16-21 Article dans une revue hal-00427745v1
Natural history of the ERVWE 1 endogenous retroviral locus. Bertrand Bonnaud,Jean Beliaeff,Olivier Bouton,Guy Oriol,Laurent Duretet al. Retrovirology, 2005, 2:57, pp.1 - 7. ⟨10.1186/1742-4692-2-57⟩ Article dans une revue hal-00021661v1
Bioinformatics with a French accent L.D. Hurst,L. Duret Genome Biology, 2005, 6, pp.349.1-349.3 Article dans une revue hal-00427767v1
Homology-dependent methylation in primate repetitive DNA. J. Meunier,A. Khelifi,V. Navratil,L. Duret Proceedings of the National Academy of Sciences of the United States of America, 2005, 102 (15), pp.5471-6. ⟨10.1073/pnas.0408986102⟩ Article dans une revue hal-00427789v1
HOPPSIGEN: a database of human and mouse processed pseudogenes. A. Khelifi,L. Duret,Dominique Mouchiroud Nucleic Acids Research, 2005, 33 (Database issue), pp.D59-66. ⟨10.1093/nar/gki084⟩ Article dans une revue hal-00427774v1
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. P. Kersey,L. Bower,L. Morris,A. Horne,R. Petryszaket al. Nucleic Acids Research, 2005, 33 (Database issue), pp.D297-302. ⟨10.1093/nar/gki039⟩ Article dans une revue hal-00427773v1
Polymorphix: a sequence polymorphism database E. Bazin,L. Duret,Simon Penel,N. Galtier Nucleic Acids Research, 2005, 33, pp.481-484 Article dans une revue hal-00427707v1
Grid as a bioinformatic tool N. Jacq,Christophe Blanchet,C. Combet,E. Cornillot,L. Duretet al. Parallel Computing, 2004, 30, pp.1093-1107. ⟨10.1016/j.parco.2004.07.013⟩ Article dans une revue in2p3-00023218v1
Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region. Laetitia Michon,Laurette Morlé,Muriel Bozon,L. Duret,Jean-Christophe Zechet al. European Journal of Human Genetics, 2004, 12 (7), pp.574-8. ⟨10.1038/sj.ejhg.5201197⟩ Article dans une revue hal-00425119v1
The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology Frédéric Mallet,O. Bouton,S. Prudhomme,V. Cheynet,G. Oriolet al. Proceedings of the National Academy of Sciences of the United States of America, 2004, 101, pp.1731-1736 Article dans une revue hal-00427686v1
The Decline of Isochores in Mammals: An Assessment of the GC Content Variation Along the Mammalian Phylogeny E. Belle,L. Duret,N. Galtier,A. Eyre-Walker Journal of Molecular Evolution, 2004, 58, pp.653-660 Article dans une revue hal-00427539v1
Evidence that functional transcription units cover at least half of the human genome M. Sémon,L. Duret Trends in Genetics, 2004, 20, pp.229-232 Article dans une revue hal-00427647v1
Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. Céline Keime,Francesca Damiola,Dominique Mouchiroud,Laurent Duret,Olivier Gandrillon BMC Bioinformatics, 2004, 5, pp.143. ⟨10.1186/1471-2105-5-143⟩ Article dans une revue hal-00193784v1
Recombination drives the evolution of GC-content in the human genome J. Meunier,L. Duret Molecular Biology and Evolution, 2004, 21, pp.984-990 Article dans une revue hal-00427624v1
Evidence of Selection on the Domesticated ERVWE1 env Retroviral Element Involved in Placentation B. Bonnaud,O. Bouton,G. Oriol,V. Cheynet,L. Duretet al. Molecular Biology and Evolution, 2004, 21, pp.1895-1901 Article dans une revue hal-00427546v1
Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. C. Keime,F. Damiola,D. Mouchiroud,L. Duret,O. Gandrillon BMC Bioinformatics, 2004, 5, pp.143 Article dans une revue hal-00124096v1
Identitag a relational database for SAGE tag identification and interspecies comparison of SAGE libraries C. Keime,F. Damiola,Dominique Mouchiroud,L. Duret,Olivier Gandrillon BMC Bioinformatics, 2004, 5, pp.1-12 Article dans une revue hal-00427517v1
Grid as a bioinformatic tool N. Jacq,Christophe Blanchet,C. Combet,E. Cornillot,L. Duretet al. Parallel Computing, 2004, 30, pp.1093-1107 Article dans une revue hal-00427599v1
ROSO : Research on Optimized Oligonucleotide Probes for Microarrays N. Reymond,H. Charles,L. Duret,Federica Calevro,G. Beslonet al. Bioinformatics, 2004, 20, pp.271-273 Article dans une revue hal-00427641v1
Grid as a bioinformatic tool N. Jacq,Christophe Blanchet,C. Combet,E. Cornillot,L. Duretet al. Parallel Computing, 2004, 30, pp.1093-1107 Article dans une revue hal-00314551v1
Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region. Laurent Michon,L. Morle,M. Bozon,L. Duret,Zech J. C.et al. European Journal of Human Genetics, 2004, 12, pp.574-578 Article dans une revue hal-00161402v1
Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form O. Assossou,F. Besson,J.P. Rouault,F. Persat,C. Brissonet al. FEMS Microbiology Letters, 2003, 224, pp.161-168. ⟨10.1016/S0378-1097(03)00479-8⟩ Article dans une revue hal-00427496v1
Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans. Carène Rizzon,Edwige Martin,Gabriel Marais,Laurent Duret,Laurent Ségalatet al. Genetics, 2003, 165 (3), pp.1127-35 Article dans une revue hal-00194461v1
Neutral effect of recombination on base composition in Drosophila Gabriel Marais,Dominique Mouchiroud,L. Duret Genetical Research, 2003, 81, pp.79-89 Article dans une revue hal-00427447v1
Placenta-Specific INSL4 Expression Is Mediated by a Human Endogenous Retrovirus Element I. Bièche,A. Laurent,I. Laurendeau,L. Duret,Y. Giovangrandiet al. Biology of Reproduction, 2003, 68, pp.1422-1429 Article dans une revue hal-00427363v1
Integrated databanks access and sequence/structure analysis services at the PBIL. G. Perriere,C. Combet,Simon Penel,Christophe Blanchet,J. Thioulouseet al. Nucleic Acids Research, 2003, 31 (13), pp.3393-3399. ⟨10.1093/nar/gkg530⟩ Article dans une revue hal-00313743v1
Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans. C. Rizzon,E. Martin,G. Marais,L. Duret,L. Segalatet al. Genetics, 2003, 165, pp.1127-1135 Article dans une revue hal-00144031v1
Patterns of selection against transposons inferred from the distribution of Tc1 Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans C. Rizzon,E. Martin,Gabriel Marais,L. Duret,L. Segalatet al. Genetics, 2003, 165, pp.1127-1135 Article dans une revue hal-00427476v1
Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form Jean-Pierre Rouault,Olga Assossou,Franã§oise Besson,Florence Persat,Christine Brissonet al. FEMS Microbiology Letters, 2003, 224 (2), pp.161-168. ⟨10.1016/S0378-1097(03)00479-8⟩ Article dans une revue hal-02998536v1
Vanishing GC-Rich Isochores in Mammalian Genomes L. Duret,M. Sémon,G. Piganeau,Dominique Mouchiroud,N. Galtier Genetics, 2002, 162, pp.1837-1848 Article dans une revue hal-00427269v1
Comparative sequence analysis of the X-inactivation center region in mouse human and bovine C. Chureau,M. Prissette,A. Bourdet,Valérie Barbe,Laurence Cattolicoet al. Genome Research, 2002, 12, pp.894-908 Article dans une revue hal-00427257v1
Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores G. Piganeau,Dominique Mouchiroud,L. Duret,Christian Gautier Journal of Molecular Evolution, 2002, 54, pp.129-133 Article dans une revue hal-00427292v1
Evolution of synonymous codon usage in metazoans L. Duret Current Opinion in Genetics and Development, 2002, 12, pp.640-649 Article dans une revue hal-00427267v1
Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants L. Duret Bioinformatics, 2002, 18, pp.S91-S91 Article dans une revue hal-00427268v1
Determinants of CpG islands: expression in early embryo and isochore structure L. Ponger,L. Duret,Dominique Mouchiroud Genome Research, 2001, 11, pp.1854-1860 Article dans une revue hal-00427189v1
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes Gabriel Marais,Dominique Mouchiroud,L. Duret Proceedings of the National Academy of Sciences of the United States of America, 2001, 98, pp.5688-5692 Article dans une revue hal-00427184v1
Organisation Fonctionnement et Evolution des Génomes de Métazoaires : Mais où est donc passée la sélection naturelle ? L. Duret incollection, 2001, --, pp.287-289 Article dans une revue hal-00427170v1
Why do genes have introns? Recombination might add a new piece to the puzzle L. Duret Trends in Genetics, 2001, 17, pp.172-175 Article dans une revue hal-00427168v1
The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution L. Duret,L.D. Hurst Molecular Biology and Evolution, 2001, 18, pp.757-762 Article dans une revue hal-00427169v1
Plant Physiol.A Medicago truncatula homoglutathione synthetase is derived from glutathione synthetase by gene duplication P. Frendo,M.J. Jimenez,C. Mathieu,L. Duret,D. Gallesiet al. Plant Physiology, 2001, 126, pp.1706-1715 Article dans une revue hal-00427171v1
GC-content evolution in mammalian genomes: the biased gene conversion hypothesis N. Galtier,G. Piganeau,Dominique Mouchiroud,L. Duret Genetics, 2001, 159, pp.907-911 Article dans une revue hal-00427173v1
Synonymous codon usage accuracy of translation and gene length in Caenorhabditis elegans Gabriel Marais,L. Duret Journal of Molecular Evolution, 2001, 52, pp.275-280 Article dans une revue hal-00427183v1
Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans L. Duret,Gabriel Marais,C. Biémont Genetics, 2000, 156, pp.1661-1669 Article dans une revue hal-00427072v1
Chromosomal distribution and coding capacity of the human endogenous retrovirus HERV-W family C. Voisset,O. Bouton,F. Bedin,L. Duret,B. Mandrandet al. AIDS Research and Human Retroviruses, 2000, 16, pp.731-740 Article dans une revue hal-00427112v1
tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes L. Duret Trends in Genetics, 2000, 16, pp.287-289 Article dans une revue hal-00427076v1
Identification and molecular analysis of BANP Anne-Marie Birot,Laurent Duret,Laurent Bartholin,Bénédicte Santalucia,Isabelle Tigaudet al. Gene, 2000, 253 (2), pp.189-196. ⟨10.1016/S0378-1119(00)00244-4⟩ Article dans une revue istex hal-02998585v1
HOBACGEN: database system for comparative genomics in bacteria G. Perrière,L. Duret,Manolo Gouy Genome Research, 2000, 10, pp.379-385. ⟨10.1101/gr.10.3.379⟩ Article dans une revue hal-00427099v1
The covariation between TpA deficiency CpG deficiency and G+C content of human isochores is due to a mathematical artifact L. Duret,N. Galtier Molecular Biology and Evolution, 2000, 17, pp.1620-1625 Article dans une revue hal-00427077v1
Nature and structure of human genes that generate retropseudogenes I. Goncalves,L. Duret,Dominique Mouchiroud Genome Research, 2000, 10, pp.672-678 Article dans une revue hal-00427085v1
Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate L. Duret,Dominique Mouchiroud Molecular Biology and Evolution, 2000, 17, pp.68-74 Article dans une revue hal-00427068v1
Use of a TT virus ORF1 recombinant protein to detect anti-TT virus antibodies in human sera C. Ott,L. Duret,I. Chemin,C. Trepo,B. Mandrandet al. Journal of General Virology, 2000, 81, pp.2949-2958 Article dans une revue hal-00427092v1
Multiple alignments for structural functional or phylogenetic analyses of homologous sequences L. Duret,S. Abdeddaim incollection, 2000, --, pp.51-76 Article dans une revue hal-00427048v1
Regulation of dauer larva development in Caenorhabditis elegans by daf-18, a homologue of the tumour suppressor PTEN Jean-Pierre Rouault,Patricia Kuwabara,Olga Sinilnikova,Laurent Duret,Danielle Thierry-Mieget al. Current Biology, 1999, 9 (6), pp.329-334. ⟨10.1016/S0960-9822(99)80143-2⟩ Article dans une revue hal-02998593v1
Molecular characterization and placental expression of HERV-W a new human endogenous retrovirus family J.L. Blond,F. Beseme,L. Duret,O. Bouton,F. Bedinet al. Journal of Virology, 1999, 73, pp.1175-1185 Article dans une revue hal-00428437v1
Expression pattern and surprisingly gene length shape codon usage in Caenorhabditis Drosophila and Arabidopsis L. Duret,Dominique Mouchiroud Proceedings of the National Academy of Sciences of the United States of America, 1999, 96, pp.4482-4487 Article dans une revue hal-00428427v1
Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans S.J. Wheelan,M.S. Boguski,L. Duret,W. Makalowski Gene, 1999, 238, pp.163-170 Article dans une revue hal-00428467v1
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling L. Duret,N. Guex,M.C. Peitsch,A. Bairoch Genome Research, 1998, 8, pp.348-353 Article dans une revue hal-00428485v1
Highly conserved RNA sequences that are sensors of environmental stress A. Spicher,O.M. Guicherit,L. Duret,A. Aslanian,E.M. Sanjineset al. Molecular and Cellular Biology, 1998, 18, pp.7371-7382 Article dans une revue hal-00428502v1
Cloning and characterization of a gene encoding a novel immunodominant antigen of Trypanosoma cruzi M. Lesenechal,L. Duret,M.I. Cano,R.A. Mortara,M. Jolivetet al. Molecular and Biochemical Parasitology, 1997, 87, pp.193-204 Article dans une revue hal-00434988v1
Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata D. Graur,Manolo Gouy,L. Duret Molecular Phylogenetics and Evolution, 1997, 7 (2), pp.195-200. ⟨10.1006/mpev.1996.0391⟩ Article dans une revue istex hal-00434984v1
Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle F Guéhenneux,L. Duret,Mb Callanan,R Bouhas,S Hayetteet al. Leukemia, 1997, 11 (3), pp.370-375. ⟨10.1038/sj.leu.2400599⟩ Article dans une revue hal-02998613v1
Searching for regulatory elements in human noncoding sequences L. Duret,P. Bucher Current Opinion in Structural Biology, 1997, 7, pp.399-406 Article dans une revue hal-00434977v1
Phylogenetic position of the order Lagomorpha (rabbits hares and allies) D. Graur,L. Duret,Manolo Gouy Nature, 1996, 379, pp.333-335. ⟨10.1038/379333a0⟩ Article dans une revue istex hal-00435019v1
LALNVIEW: a graphical viewer for pairwise sequence alignments L. Duret,E. Gasteiger,G. Perrière Computer Applications in the Biosciences, 1996, 12, pp.507-510 Article dans une revue hal-00435026v1
Isolation and characterization of a cDNA encoding a chicken actin-like protein J.J. Michaille,Manolo Gouy,Simon Blanchet,L. Duret Gene, 1995, 154 (2), pp.205-209. ⟨10.1016/0378-1119(94)00865-P⟩ Article dans une revue istex hal-00698055v1
Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores L. Duret,Dominique Mouchiroud,Christian Gautier Journal of Molecular Evolution, 1995, 40, pp.308-317 Article dans une revue hal-00698070v1
HOVERGEN: a database of homologous vertebrate genes L. Duret,Dominique Mouchiroud,Manolo Gouy Nucleic Acids Research, 1994, 22 (12), pp.2360-2365. ⟨10.1093/nar/22.12.2360⟩ Article dans une revue hal-00698069v1
Rearrangement of CCND1 (BCL1/PRAD1) 3' untranslated region in mantle-cell lymphomas and t(11q13)-associated leukemias R. Rimokh,F. Berger,C. Bastard,B. Klein,M. Frenchet al. Blood, 1994, 83, pp.3689-3696 Article dans une revue hal-00698183v1
Sequence analysis reveals that the BTG1 anti-proliferative gene is conserved throughout evolution in its coding and 3' non-coding regions Jean-Pierre Rouault,J.P. Rouault,C. Samarut,L. Duret,C. Tessaet al. Gene, 1993, 129 (2), pp.303-306. ⟨10.1016/0378-1119(93)90284-A⟩ Article dans une revue istex hal-02998651v1
BTG1, a member of a new family of antiproliferative genes. Jean-Pierre Rouault,R. Rimokh,C. Tessa,G. Paranhos,M. Ffrenchet al. EMBO Journal, 1992, 11 (4), pp.1663-1670. ⟨10.1002/j.1460-2075.1992.tb05213.x⟩ Article dans une revue hal-02998663v1

Chapitre d'ouvrage (3)

Modélisation des systèmes biologiques, bioinformatique Olivier Gascuel,P. Benas,C. Brun,D. Burnouf,Alexandre de Brevernet al. Rapport de conjoncture 2010 du Comité national de la recherche scientifique, CNRS Editions, chapitre 43, 845-858, 2011, 978-2-271-07263-4 Chapitre d'ouvrage hal-00799641v1
Evolution Moléculaire L. Duret,T. Bataillon,N. Bierne,Vincent Daubin,J. Dutheilet al. sous la direction de Frédéric Thomas; Thierry Lefèvre; Michel Raymond. Biologie évolutive, De Boeck, pp.114-173, 2010, 978-2-8041-0161-9 Chapitre d'ouvrage hal-00539271v1
HOVERGEN: comparative analysis of homologous vertebrate genes L. Duret,G. Perrière,Manolo Gouy Letovsky S. Bioinformatics: databases and systems, Springer, pp.21-35, 1999, 978-0-7923-8573-8. ⟨10.1007/0-306-46903-0_3⟩ Chapitre d'ouvrage hal-00428428v1