sophie lemoine

Publications

Article dans une revue (40)

A systematic scoring system to optimise the testing of neurotherapeutics in models of perinatal brain injury, with an applied case study of human umbilical-cord MSC Cindy Bokobza,Clémence Réda,Syam Nair,David Guenoun,Eridan Rocha-Ferreiraet al. Journal of Neuroinflammation, 2025, 23 (1), pp.3. ⟨10.1186/s12974-025-03593-2⟩ Article dans une revue hal-05461926v1
An AluYa5 Insertion in the 3'UTR of COL4A1 and Cerebral Small Vessel Disease Chaker Aloui,Lisa Neumann,Françoise Bergametti,Eric Sartori,Marc Herbreteauet al. JAMA Network Open, 2024, 7 (4), pp.e247034. ⟨10.1001/jamanetworkopen.2024.7034⟩ Article dans une revue hal-04563144v1
Deleterious effect of sustained neuroinflammation in pediatric traumatic brain injury Alice Jacquens,Zsolt Csaba,Haleh Soleimanzad,Cindy Bokobza,Pierre-Romain Delmotteet al. Brain, Behavior, and Immunity, 2024, 120, pp.99-116. ⟨10.1016/j.bbi.2024.04.029⟩ Article dans une revue hal-05426815v1
Blood Monocyte Phenotype Is A Marker of Cardiovascular Risk in Type 2 Diabetes Jean-Baptiste Julla,Diane Girard,Marc Diedisheim,Pierre-Jean Saulnier,Bao Tran Vuonget al. Circulation Research, 2024, 134 (2), pp.189-202. ⟨10.1161/circresaha.123.322757⟩ Article dans une revue hal-04534577v1
A unique cerebellar pattern of microglia activation in a mouse model of encephalopathy of prematurity Luisa Klein,Juliette van Steenwinckel,Bobbi Fleiss,Till Scheuer,Christoph Bühreret al. Glia, 2022, 70 (9), pp.1699-1719. ⟨10.1002/glia.24190⟩ Article dans une revue hal-04326421v1
Comparative transcriptome analysis of goat (Capra hircus) adipose tissue reveals physiological regulation of body reserve recovery after the peak of lactation Yannick Faulconnier,Céline Boby,Fanny Coulpier,Sophie Lemoine,Patrice Martinet al. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2022, 41, pp.100956. ⟨10.1016/j.cbd.2021.100956⟩ Article dans une revue hal-03524137v1
Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling L. Orliaguet,T. Ejlalmanesh,A. Humbert,R. Ballaire,M. Diedisheimet al. Nature Communications, 2022, 13 (1), pp.5089. ⟨10.1038/s41467-022-32813-z⟩ Article dans une revue hal-03770463v1
The tumor microenvironment impairs Th1 IFNγ secretion through alternative splicing modifications of Irf1 pre-mRNA Antoine Bernard,Christophe Hibos,Corentin Richard,Etienne Viltard,Sandy Chevrieret al. Cancer Immunology Research, 2021, 9 (3), pp.324-336. ⟨10.1158/2326-6066.CIR-19-0679⟩ Article dans une revue hal-03834196v1
Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1 Serena Barilla,Ning Liang,Enrichetta Mileti,Raphaëlle Ballaire,Marie Lhommeet al. Molecular metabolism, 2020, 42, pp.101066. ⟨10.1016/j.molmet.2020.101066⟩ Article dans une revue hal-02967944v1
Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection Nguyen-Quang Nam,Sophie Goudey,Emmanuel Segeral,Ammara Mohammad,Sophie Lemoineet al. Retrovirology, 2020, 17, pp.25. ⟨10.1186/s12977-020-00533-1⟩ Article dans une revue hal-02953802v1
Adipocyte Reprogramming by the Transcriptional Coregulator GPS2 Impacts Beta Cell Insulin Secretion Karima Drareni,Raphaëlle Ballaire,Fawaz Alzaid,Andreia Goncalves,Catherine Cholletet al. Cell Reports, 2020, 32, pp.108141 -. ⟨10.1016/j.celrep.2020.108141⟩ Article dans une revue hal-03491495v1
Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination Anne-Sophie Fiorucci,Clara Bourbousse,Lorenzo Concia,Martin Rougée,Anne-Flore Deton-Cabanillaset al. Genome Biology, 2019, 20 (100), ⟨10.1186/s13059-019-1705-4⟩ Article dans une revue hal-02156634v1
Molecular characterisation of a cellular conveyor belt in Clytia medusae Thomas Condamine,Muriel Jager,Lucas Leclère,Corinne Blugeon,Sophie Lemoineet al. Developmental Biology, 2019, 456 (2), pp.212-225. ⟨10.1016/j.ydbio.2019.09.001⟩ Article dans une revue hal-02381895v1
Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes Maria Almonacid,Adel Al Jord,Stephany El-Hayek,Alice Othmani,Fanny Coulpieret al. Developmental Cell, 2019, 51 (2), pp.145-157.e10. ⟨10.1016/j.devcel.2019.09.010⟩ Article dans une revue hal-03003444v1
Zinc Uptake and Storage During the Formation of the Cerebral Cortex in Mice Jessy Hasna,Sylvain Bohic,Sophie Lemoine,Corinne Blugeon,Alexandre Bouron Molecular Neurobiology, 2019, 56 (10), pp.6928-6940. ⟨10.1007/s12035-019-1581-7⟩ Article dans une revue hal-02090330v1
Cellular Origin, Tumor Progression, and Pathogenic Mechanisms of Cutaneous Neurofibromas Revealed by Mice with Nf1 Knockout in Boundary Cap Cells Katarzyna J Radomska,Fanny Coulpier,Aurelie Gresset,Alain Schmitt,Amal Debbicheet al. Cancer Discovery, In press, 9 (1), pp.130-147. ⟨10.1158/2159-8290.CD-18-0156⟩ Article dans une revue hal-03822481v1
Active intermixing of indirect and direct neurons builds the striatal mosaic Andrea Tinterri,Fabien Ménardy,Marco Diana,Ludmilla Lokmane,Maryama Keitaet al. Nature Communications, 2018, 9 (1), pp.4725. ⟨10.1038/s41467-018-07171-4⟩ Article dans une revue hal-01927169v1
Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin Aline Bonnet,Guillaume Lambert,Sylvain Ernest,François Xavier Dutrieux,Fanny Coulpieret al. Developmental Cell, 2017, 42 (5), pp.527-541.e4. ⟨10.1016/j.devcel.2017.08.004⟩ Article dans une revue hal-03842667v1
Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction Ivanova Christa,Ramoni Jonas,Thiziri Aouam,Frischmann Alexa,Bernhard Seibothet al. Biotechnology for Biofuels, 2017, 10, pp.209. ⟨10.1186/s13068-017-0897-7⟩ Article dans une revue hal-01592860v1
Aozan: an automated post-sequencing data-processing pipeline Sandrine Perrin,Cyril Firmo,Sophie Lemoine,Stéphane Le Crom,Laurent Jourdren Bioinformatics, 2017, 33 (14), pp.2212-2213. ⟨10.1093/bioinformatics/btx154⟩ Article dans une revue hal-03842523v1
IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans Fawaz Alzaid,Floriane Lagadec,Miguel Albuquerque,Raphaëlle Ballaire,Lucie Orliaguetet al. JCI Insight, 2016, 1 (20), ⟨10.1172/jci.insight.88689⟩ Article dans une revue hal-03842669v1
Control of Plasma Membrane Permeability by ABC Transporters Svetlana Khakhina,Soraya S. Johnson,Raman Manoharlal,Sarah B. Russo,Corinne Blugeonet al. Eukaryotic Cell, 2015, 14 (5), pp.442-453. ⟨10.1128/EC.00021-15⟩ Article dans une revue hal-01528527v1
The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei Sara Ghassemi,Alexander Lichius,Fréderique Bidard,Sophie Lemoine,Marie‐noëlle Rossignolet al. Molecular Microbiology, 2015, 96 (2), pp.405-418. ⟨10.1111/mmi.12944⟩ Article dans une revue hal-03842675v1
Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae Sandra Mota,Neide Vieira,Sónia Barbosa,Thierry Delaveau,Claire Torchetet al. PLoS ONE, 2014, 9 (11), pp.e111589. ⟨10.1371/journal.pone.0111589⟩ Article dans une revue hal-01527344v1
High-Frequency Promoter Firing Links THO Complex Function to Heavy Chromatin Formation John Mouaikel,Sebastien Z. Causse,Mathieu Rougemaille,Yves Daubenton-Carafa,Corinne Blugeonet al. Cell Reports, 2013, 5 (4), pp.1082-1094. ⟨10.1016/j.celrep.2013.10.013⟩ Article dans une revue hal-01528425v1
RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans. Sanjiveeni Dhamgaye,Maria Bernard,Gaëlle Lelandais,Odile Sismeiro,Sophie Lemoineet al. BMC Genomics, 2012, 13 (1), pp.396. ⟨10.1186/1471-2164-13-396⟩ Article dans une revue inserm-00733893v1
Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress Geraldine Servant,Benoît Pinson,Aurélie Tchalikian-Cosson,Fanny Coulpier,Sophie Lemoineet al. Nucleic Acids Research, 2012, 40 (12), pp.5271-5282. ⟨10.1093/nar/gks166⟩ Article dans une revue hal-02119179v1
Tye 7 regulates yeast Ty1 retrotransposon sense and sntisense transcription in response to adenylic nucleotide stress G. Servant,Benoît Pinson,A. Tchalikian-Cosson,F. Coulpier,S. Lemoineet al. Nucleic Acids Research, 2012, pp.00-00 Article dans une revue hal-00703347v1
Ploidy influences cellular responses to gross chromosomal rearrangements in saccharomyces cerevisiae Paul P. Jung,Emilie Fritsch,Corinne Blugeon,Jean-Luc Souciet,Serge Potieret al. BMC Genomics, 2011, 12 (1), pp.331. ⟨10.1186/1471-2164-12-331⟩ Article dans une revue inserm-00617205v1
Physiological and toxic effects of the purine intermediate 5-amino-4-imidazolecarboxamide ribonucleotide (AICAR) in yeast. Hans C Hürlimann,B. Laloo,B. Simon-Kayser,Christelle Saint-Marc,F. Coulpieret al. Journal of Biological Chemistry, 2011, sous presse, pp.00-00 Article dans une revue hal-00608534v1
An evaluation of custom microarray applications: the oligonucleotide design challenge Sophie Lemoine,Florence Combes,Stéphane Le Crom Nucleic Acids Research, 2009, 37 (6), pp.1726-39. ⟨10.1093/nar/gkp053⟩ Article dans une revue hal-02879348v1
Selection of oligonucleotides for whole-genome microarrays with semi-automatic update. G. Golfier,Sophie Lemoine,A van Miltenberg,A Bendjoudi,J. Rossieret al. Bioinformatics, 2009, 25 (1), pp.128-9. ⟨10.1093/bioinformatics/btn573⟩ Article dans une revue hal-02879352v1
Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways Benoît Pinson,Sabine Vaur,Isabelle Sagot,F. Coulpier,S. Lemoineet al. Genes and Development, 2009, 23 (12), pp.1399-1407 Article dans une revue hal-00403264v1
Yeast mitochondrial biogenesis : a role for the PUF RNA binding protein Puf3p in mRNA localization Y. Saint-Georges,M. Garcia,T. Delaveau,Stéphane Le Crom,S. Lemoineet al. PLoS ONE, 2008, pp.3(6) e2293 Article dans une revue hal-00333137v1
Structure and properties of transcriptional networks driving selenite stress response in yeasts Hélène Salin,Vivienne Fardeau,Eugenia Piccini,Gaelle Lelandais,Véronique Tantyet al. BMC Genomics, 2008, 9 (1), pp.333. ⟨10.1186/1471-2164-9-333⟩ Article dans une revue hal-03842687v1
Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization Yann Saint-Georges,Mathilde Garcia,Thierry Delaveau,Laurent Jourdren,Stephane Le Cromet al. PLoS ONE, 2008, 3 (6), pp.e2293. ⟨10.1371/journal.pone.0002293⟩ Article dans une revue hal-02098526v1
Non-productive docking of mRNPs to the nuclear pore in THO/sub2 mutants M. Rougemaille,E. Kisseleva-Romanova,R. Kanthgudipati,S. Lemoine,C. Blugeonet al. Cell, 2008, 135, pp.308-321 Article dans une revue hal-00333123v1
THO/Sub2p Functions to Coordinate 3′-End Processing with Gene-Nuclear Pore Association Mathieu Rougemaille,Guennaelle Dieppois,Elena Kisseleva-Romanova,Rajani Kanth Gudipati,Sophie Lemoineet al. Cell, 2008, 135 (2), pp.308-321. ⟨10.1016/j.cell.2008.08.005⟩ Article dans une revue hal-03842689v1
The central role of PDR1 in the foundation of yeast drug resistance. V. Fardeau,G. Lelandais,A. Oldfield,H. Salin,S. Lemoineet al. Journal of Biological Chemistry, 2007, 282, pp.5063-5074 Article dans une revue hal-00173044v1
Goulphar: rapid access and expertise for standard two-color microarray normalization methods. Sophie Lemoine,Florence Combes,Nicolas Servant,Stéphane Le Crom BMC Bioinformatics, 2006, 7, pp.467. ⟨10.1186/1471-2105-7-467⟩ Article dans une revue inserm-00122139v1

Poster de conférence (5)

Generation of gene annotations including UTRs for Bulk and Single-Cell RNASeq analyses Brunon Salomé,Laurent Jourdren,Sophie Lemoine JOBIM 2025, Jul 2025, Bordeaux, France. Poster de conférence hal-05142734v1
Wf-ToulligQC : A User-Friendly Solution for Quality Control of Nanopore sequencing data on EPI2ME Labs Ali Hamraoui,Karine Dias,Sophie Lemoine,Morgane Thomas-Chollier,Stéphane Le Cromet al. Assemblée générale France Génomique, Jun 2023, Paris, France. Poster de conférence hal-05142806v1
ToulligQC 2: fast and comprehensive quality control for Oxford Nanopore sequencing data Karine Dias,Sophie Lemoine,Morgane Thomas-Chollier,Stéphane Le Crom,Laurent Jourdren JOBIM 2022, Jul 2022, Rennes (Campus de Beaulieu), France. Poster de conférence hal-05144856v1
scRNA-seq with Nanopore sequencing: benchmark of approaches based on hybrid sequencing Ali Hamraoui,Catherine Sénamaud-Beaufort,Audrey Onfroy,Stéphane Le Crom,Morgane Thomas-Chollieret al. jobim 2022, Jul 2022, Rennes (Campus de Beaulieu), France. Poster de conférence hal-05144874v1
Suppression before amplification of highly abundant mRNA to profile gene expression from microdissected mammary epithelial cells Claudia Bevilacqua,Nicolas Crapart,Catherine Hue-Beauvais,B Brandao,S Lemoineet al. qPCR dPCR & NGS 2017 - 8. international Gene Quantification Event, Apr 2017, Freising, Germany. , 2016 Poster de conférence hal-02798294v1

Pré-publication, Document de travail (4)

Regeneration of distinct complex structures in the annelid &lt;i&gt;Platynereis&lt;/i&gt; is partially based on common morphological, cellular, and molecular events Zoe Atzin Velasquillo Ramirez,Viktor Starunov,Louis Pare,Loeiza Baduel,Theaud Hezezet al. 2025 Pré-publication, Document de travail hal-05298578v1
Evolution of opsin genes in closely-related species of butterflies specialized in different microhabitats Joséphine Ledamoisel,Andrew Dang,Julien Devilliers,Tiphaine Marvillet,Sophie Lemoineet al. 2025 Pré-publication, Document de travail hal-05348341v1
A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq Nanopore long-read data Ali Hamraoui,Audrey Onfroy,Catherine Sénamaud-Beaufort,Fanny Coulpier,Sophie Lemoineet al. 2025 Pré-publication, Document de travail hal-05190995v1
A novel RNP compartment boosts translation in growing mouse oocytes to avoid cytoplasm dilution N. Zollo,G. Zaffagnini,A. Canette,G. Letort,C. da Silvaet al. 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05390443v1