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Lionel Spinelli

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Publications

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Characterizing intergenic transcription at RNA polymerase II binding sites in normal and cancer tissues

Pierre de Langen , Fayrouz Hammal , Elise Guéret , Jean-Christophe Mouren , Lionel Spinelli
Cell Genomics, 2023, 3, pp.100411. ⟨10.1016/j.xgen.2023.100411⟩
Journal articles hal-04228229v1
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Peyer’s patch phagocytes acquire specific transcriptional programs that influence their maturation and activation profiles

Cynthia Arroyo Portilla , Romain Fenouil , Camille Wagner , Cécilia Luciani , Margaux Lagier
Mucosal Immunology, 2023, 16 (4), pp.527-547. ⟨10.1016/j.mucimm.2023.05.009⟩
Journal articles hal-04239631v1
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ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database

Pauline Brochet , Jean-Christophe Mouren , Laurent Hannouche , Fabrice Lopez , Benoit Ballester
Database - The journal of Biological Databases and Curation, 2023, 2023, pp.baad037. ⟨10.1093/database/baad037⟩
Journal articles hal-04284853v1
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Genetic architecture of natural variation of cardiac performance from flies to humans

Saswati Saha , Lionel Spinelli , Jaime Castro Mondragon , Anaïs Kervadec , Michaela Lynott
eLife, 2022, 11, pp.e82459. ⟨10.7554/eLife.82459⟩
Journal articles hal-04240693v1
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Blood DNA methylation marks discriminate Chagas cardiomyopathy disease clinical forms

Pauline Brochet , Barbara Ianni , João P S Nunes , Amanda F Frade , Priscila C Teixeira
Frontiers in Immunology, 2022, 13, ⟨10.3389/fimmu.2022.1020572⟩
Journal articles hal-04117605v1
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Epigenetic regulation of transcription factor binding motifs promotes Th1 response in Chagas disease cardiomyopathy

Pauline Brochet , Barbara Maria Ianni , Laurie Laugier , Amanda Farage Frade , João Paulo Silva Nunes
Frontiers in Immunology, 2022, 13, ⟨10.3389/fimmu.2022.958200⟩
Journal articles hal-03831919v1
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Epi-MEIF: detecting higher order epistatic interactions for complex traits using mixed effect conditional inference forests

Saswati Saha , Laurent Perrin , Laurence Röder , Christine Brun , Lionel Spinelli
Nucleic Acids Research, 2022, pp.gkac715. ⟨10.1093/nar/gkac715⟩
Journal articles hal-03800774v1
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Genetic architecture of natural variation of cardiac performance from flies to humans

Saswati Saha , Lionel Spinelli , Jaime Castro Mondragon , Anaïs Kervadec , Michaela Lynott
eLife, 2022, 11, ⟨10.7554/eLife.82459⟩
Journal articles hal-03934913v1
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MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses

Sebastien A Choteau , Audrey Wagner , Philippe Pierre , Lionel Spinelli , Christine Brun
Database - The journal of Biological Databases and Curation, 2021, 2021, ⟨10.1093/database/baab032⟩
Journal articles hal-03268485v1
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Type 1 Innate Lymphoid Cells Limit the Antitumoral Immune Response

Margaux Vienne , Marion Etiennot , Bertrand Escalière , Justine Galluso , Lionel Spinelli
Frontiers in Immunology, 2021, 12, ⟨10.3389/fimmu.2021.768989⟩
Journal articles hal-03439141v1
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Distinct Waves from the Hemogenic Endothelium Give Rise to Layered Lymphoid Tissue Inducer Cell Ontogeny

Milesa Simic , Iris Manosalva , Lionel Spinelli , Rebecca Gentek , Raheleh R Shayan
Cell Reports, 2020, 32 (6), pp.108004. ⟨10.1016/j.celrep.2020.108004⟩
Journal articles inserm-02915324v1
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Differentiation Paths of Peyer’s Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming

Camille Wagner , Johnny Bonnardel , Clément da Silva , Lionel Spinelli , Cynthia Arroyo Portilla
Cell Reports, 2020, 31 (1), pp.107479. ⟨10.1016/j.celrep.2020.03.043⟩
Journal articles hal-02980979v1
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Reticular Fibroblasts Expressing the Transcription Factor WT1 Define a Stromal Niche that Maintains and Replenishes Splenic Red Pulp Macrophages

Alicia Bellomo , Isabelle Mondor , Lionel Spinelli , Marine Lagueyrie , Benjamin J Stewart
Immunity, 2020, 53 (1), pp.127 - 142.e7. ⟨10.1016/j.immuni.2020.06.008⟩
Journal articles hal-03013466v1
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FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells

Noudjoud Attaf , Inaki Cervera-Marzal , Chuang Dong , Laurine Gil , Amédée Renand
Frontiers in Immunology, 2020, 11, pp.216. ⟨10.3389/fimmu.2020.00216⟩
Journal articles inserm-02561110v1
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Post-transcriptional regulatory patterns revealed by protein-RNA interactions

Andreas Zanzoni , Lionel Spinelli , Diogo Ribeiro , Gian Gaetano Tartaglia , Christine Brun
Scientific Reports, 2019, 9 (1), pp.4302. ⟨10.1038/s41598-019-40939-2⟩
Journal articles hal-02070124v1
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Assessment of network module identification across complex diseases

Sarvenaz Choobdar , Mehmet Ahsen , Jake Crawford , Mattia Tomasoni , Tao Fang
Nature Methods, 2019, 16 (9), pp.843-852. ⟨10.1038/s41592-019-0509-5⟩
Journal articles hal-02333148v1
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MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins

Diogo Ribeiro , Galadriel Briere , Benoit Bely , Lionel Spinelli , Christine Brun
Nucleic Acids Research, 2019, ⟨10.1093/nar/gky1039⟩
Journal articles hal-01907669v1

Human germinal center transcriptional programs are de-synchronized in B cell lymphoma

Pierre Milpied , Iñaki Cervera-Marzal , Marie-Laure Mollichella , Bruno Tesson , Gabriel Brisou
Nature Immunology, 2018, 19 (9), pp.1013 - 1024. ⟨10.1038/s41590-018-0181-4⟩
Journal articles hal-01858136v1

High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NK Cell Subsets in Humans and Mice.

Adeline Crinier , Pierre Milpied , Bertrand Escaliere , Christelle Piperoglou , Justine Galluso
Immunity, 2018, 49 (5), pp.971--986.e5. ⟨10.1016/j.immuni.2018.09.009⟩
Journal articles hal-02086845v1

Guanabenz inhibits TLR9 signaling through a pathway that is independent of eIF2α dephosphorylation by the GADD34/PP1c complex

Jessica Perego , Andreia Mendes , Clarisse Bourbon , Voahirana Camosseto , Alexis Combes
Science Signaling, 2018, 11 (514), pp.eaam8104. ⟨10.1126/scisignal.aam8104⟩
Journal articles hal-02086881v1
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Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila

Johannes Bischof , Marilyne Duffraisse , Edy Furger , Leiore Ajuria , Guillaume Giraud
Journal articles hal-01882683v1
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Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs

Diogo Ribeiro , Andreas Zanzoni , Andrea Cipriano , Riccardo Delli ponti , Lionel Spinelli
Nucleic Acids Research, 2018, ⟨10.1093/nar/gkx1169⟩
Journal articles hal-01644177v1
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Guanabenz prevents D-galactosamine/LPS-induced liver damage and mortality

Perego Jessica , Clarisse Bourbon , Lionel Chasson , Caroline Laprie , Lionel Spinelli
Frontiers in Immunology, 2017, 8, ⟨10.3389/fimmu.2017.00679⟩
Journal articles hal-01533164v1
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Protein synthesis inhibition and GADD34 control IFN‐β heterogeneous expression in response to dsRNA

Alexandre Dalet , Rafael J Argüello , Alexis Combes , Lionel Spinelli , Sebastien Jaeger
EMBO Journal, 2017, 36 (6), pp.761 - 782. ⟨10.15252/embj.201695000⟩
Journal articles hal-01476255v1
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Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins

Andreas Zanzoni , Lionel Spinelli , Shérazade Braham , Christine Brun
Microbiome, 2017, 5 (1), pp.89. ⟨10.1186/s40168-017-0307-1⟩
Journal articles hal-01580138v1
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Flux through a Markov chain

Elena Floriani , Ricardo Lima , Ouerdia Ourrad , Lionel Spinelli
Chaos, Solitons & Fractals, 2016, 93, pp.136 - 146. ⟨10.1016/j.chaos.2016.10.006⟩
Journal articles hal-01406815v1

Pasha: a versatile R package for piling chromatin HTS data

Romain Fenouil , Nicolas Descostes , Lionel Spinelli , Frederic Koch , Muhammad Ahmad Maqbool
Bioinformatics, 2016, 32 (16), pp.2528 - 2530. ⟨10.1093/bioinformatics/btw206⟩
Journal articles hal-01407393v1
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Extreme multifunctional proteins identified from a human protein interaction network.

Charles E Chapple , Benoît Robisson , Lionel Spinelli , Celine Guien , Becker Emmanuelle
Nature Communications, 2015, 6 (1), pp.7412. ⟨10.1038/ncomms8412⟩
Journal articles hal-01407399v1
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BubbleGUM: automatic extraction of phenotype molecular signatures and comprehensive visualization of multiple Gene Set Enrichment Analyses

Lionel Spinelli , Sabrina Carpentier , Frederic Montañana-Sanchis , Marc Dalod , Thien-Phong Vu Manh
BMC Genomics, 2015, 16 (814), ⟨10.1186/s12864-015-2012-4⟩
Journal articles hal-01236135v1
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Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells

Nicolas Descostes , Martin Heidemann , Lionel Spinelli , Roland Schüller , Muhammad Ahmad Maqbool
Journal articles hal-01431911v1

Experimental detection of long-distance interactions between biomolecules through their diffusion behavior: Numerical study

Ilaria Nardecchia , Lionel Spinelli , Jordane Preto , Matteo Gori , Elena Floriani
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2014, 90 (2), pp.022703. ⟨10.1103/PhysRevE.90.022703⟩
Journal articles hal-01252344v1
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Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters

Lionel Spinelli , Philippe Gambette , Charles E. Chapple , Benoît Robisson , Anaïs Baudot
BioSystems, 2013, 113 (2), pp.91-93. ⟨10.1016/j.biosystems.2013.05.010⟩
Journal articles hal-00832028v2

Topology and Phase Transitions I. Preliminary Results

Roberto Franzosi , Marco Pettini , Lionel Spinelli
Nuclear Physics B, 2007, 783, pp.189-218
Journal articles hal-00145212v1

Topological aspects of geometrical signatures of phase transitions

Roberto Franzosi , Lapo Casetti , Lionel Spinelli , Marco Pettini
Physical Review E , 1999, 60 (5), pp.R5009 - R5012. ⟨10.1103/PhysRevE.60.R5009⟩
Journal articles hal-01431976v1
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Framework for cosmography at high redshift

R. Triay , L. Spinelli , R. Lafaye
Monthly Notices of the Royal Astronomical Society, 1996, 279 (2), pp.564 - 570. ⟨10.1093/mnras/279.2.564⟩
Journal articles hal-01431981v1