Louis-Félix Nothias

Publications

Poster de conférence (9)

Gen²KGBot: Generic Generative Knowledge Graph Robot Yousouf Taghzouti,Louis-Félix Nothias,Franck Michel,Fabien Gandon AI Action Summit, Feb 2025, Paris, France. Poster de conférence hal-05333244v1
MetaboT: A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining Madina Bekbergenova,Lucas Pradi,Emma Tysinger,Benjamin Navet,Olivier Kirchhofferet al. The 21st Annual Conference of the Metabolomics Society, Jun 2025, Prague, Czech Republic Poster de conférence hal-05235334v1
MetaboT: A conversational AI agent for accessible Mass Spectrometry Metabolomics Data Mining Madina Bekbergenova,Lucas Pradi,Emma Tysinger,Benjamin Navet,Olivier Kirchhofferet al. Benelux Metabolomics Days 2025, Aug 2025, Leiden, Netherlands Poster de conférence hal-05235376v1
Perspicacité-AI: An AI-Pipeline for Accelerating Scientific Education and Research Lucas Pradi,Tao Jiang,Matthieu Féraud,Madina Bekbergenova,Yousouf Taghzoutiet al. Metabolomics 2025, Jun 2025, Prage, Czech Republic Poster de conférence hal-05232923v1
MetaboT: AI-based agent for interaction with metabolomics knowledge graphs Madina Bekbergenova,Lucas Pradi,Benjamin Navet,Yousouf Taghzouti,Emma Tysingeret al. EDSFA 2nd year PhD Workshop, May 2025, Sophia -Antipolis, France Poster de conférence hal-05235422v1
Building Questions and Queries Datasets for Knowledge Graphs: a Demo of Q²Forge Pipeline Yousouf Taghzouti,Franck Michel,Tao Jiang,Louis-Félix Nothias,Fabien Gandon ISWC 2025: The 24th International Semantic Web Conference, Nov 2025, Nara, Japan. , CEUR-worshop proceedings, CEUR-4085 Poster de conférence hal-05332768v1
ScienceXGuide Pipeline: An AI-Pipeline for Accelerating Scientific Education and Research Lucas Pradi,Madina Bekbergenova,Louis-Félix Nothias Benelux Metabolomics Days 2024, Sep 2024, Ghent, Belgium Poster de conférence hal-05233198v1
MetaboT: A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining Louis-Félix Nothias 72nd Conference on Mass Spectrometry and Allied Topics, Jul 2024, Anaheim (California), United States Poster de conférence hal-04803451v1
MetaboT: A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining Madina Bekbergenova,Lucas Pradi,Emma Tysinger,Benjamin Navet,Olivier Kirchhofferet al. Benelux Metabolomics Days 2024, Sep 2024, Ghent, Belgium Poster de conférence hal-05235292v1

Communication dans un congrès (7)

Perspicacité-AI Lucas Pradi,Tao Jiang,Matthieu Féraud,Madina Bekbergenova,Yousouf Taghzoutiet al. Metabolomics Symposium, Jul 2025, Nice, France Communication dans un congrès hal-05233151v1
Q²Forge: Minting Competency Questions and SPARQL Queries for Question-Answering Over Knowledge Graphs Yousouf Taghzouti,Franck Michel,Tao Jiang,Louis-Félix Nothias,Fabien Gandon K-CAP '25 - Knowledge Capture Conference 2025, Dec 2025, Dayton, OH, United States. ⟨10.1145/3731443.3771350⟩ Communication dans un congrès hal-05070442v3
MetaboT: AI-based agent for natural language-based interaction with metabolomics knowledge graphs Madina Bekbergenova,Lucas Pradi,Benjamin Navet,Emma Tysinger,Franck Michelet al. 33rd annual international conference on Intelligent Systems for Molecular Biology (ISMB 2025) / 24th Annual Conference of the European Conference on Computational Biology (ECCB 2025), Jul 2025, Liverpool, United Kingdom Communication dans un congrès hal-05235355v1
Discovering novel microbially-conjugated bile acids with metabolomics Louis-Félix Nothias Feeding the Microbiota 2024, Hopitaux Universitaires de Genève, Feb 2024, Genève, France Communication dans un congrès hal-04803440v1
Discovering Microbially Conjugated Bile Acids with Computational Metabolomics Louis-Félix Nothias 2024 6th Labex SIGNALIFE Meeting, Université Côte d'Azur; Labex SIGNALIFE, Nov 2024, Nice, France Communication dans un congrès hal-04803428v1
A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining Louis-Félix Nothias Metabolomics Society annual meeting 2024, Metabolomics Society, Jun 2024, Osaka, Japan Communication dans un congrès hal-04803460v1
An Artificial Intelligence Agent for Navigating Knowledge Graph Experimental Metabolomics Data Emma Tysinger,Marco Pagni,Olivier Kirchhoffer,Florence Mehl,Fabien Gandonet al. 2023 Swiss Metabolomics Society Annual Meeting, Swiss Metabolomics Socitety Zurich; ETH Zurich, Sep 2023, Zurich, Switzerland Communication dans un congrès hal-04381448v1

Article dans une revue (7)

Reproducible mass spectrometry data processing and compound annotation in MZmine 3 Steffen Heuckeroth,Tito Damiani,Aleksandr Smirnov,Olena Mokshyna,Corinna Brungset al. Nature Protocols, 2024, 19 (9), pp.2597-2641. ⟨10.1038/s41596-024-00996-y⟩ Article dans une revue hal-04803362v1
Comprehensive mass spectrometric metabolomic profiling of a chemically diverse collection of plants of the Celastraceae family Luis-Manuel Quiros-Guerrero,Pierre-Marie Allard,Louis-Félix Nothias,Bruno David,Antonio Grondinet al. Scientific Data , 2024, 11 (1), pp.415. ⟨10.1038/s41597-024-03094-6⟩ Article dans une revue hal-04803402v1
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics Wout Bittremieux,Nicole Avalon,Sydney Thomas,Sarvar Kakhkhorov,Alexander Aksenovet al. Nature Communications, 2023, 14 (1), pp.8488. ⟨10.1038/s41467-023-44035-y⟩ Article dans une revue hal-04803380v1
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity Justin Shaffer,Louis-Félix Nothias,Luke Thompson,Jon Sanders,Rodolfo Salidoet al. Nature Microbiology, 2022, 7 (12), pp.2128-2150. ⟨10.1038/s41564-022-01266-x⟩ Article dans une revue hal-04277809v1
ReDU: a framework to find and reanalyze public mass spectrometry data Alan Jarmusch,Mingxun Wang,Christine Aceves,Rohit Advani,Shaden Aguirreet al. Nature Methods, 2020, 17 (9), pp.901-904. ⟨10.1038/s41592-020-0916-7⟩ Article dans une revue hal-04886483v1
Investigation of Premyrsinane and Myrsinane Esters in Euphorbia cupanii and Euphobia pithyusa with MS2LDA and Combinatorial Molecular Network Annotation Propagation Mélissa Nothias-Esposito,Louis-Félix Nothias,Ricardo da Silva,Pascal ́ Retailleau,Zheng Zhanget al. Journal of Natural Products, 2019, 82 (6), pp.1459-1470. ⟨10.1021/acs.jnatprod.8b00916⟩ Article dans une revue hal-02159546v1
Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation Louis-Félix Nothias,Mélissa Nothias-Esposito,Ricardo da Silva,Mingxun Wang,Ivan Protsyuket al. Journal of Natural Products, 2018, 81 (4), pp.758-767. ⟨10.1021/acs.jnatprod.7b00737⟩ Article dans une revue hal-04439264v1

Pré-publication, Document de travail (4)

Prioritization of Novel Anti-infective Stilbene derivatives by Combining Metabolomic Data Organization and a Stringent 3R-infection Model in a Knowledge Graph Olivier Auguste Kirchhoffer,Luis Quiros-Guerrero,Jahn Nitschke,Louis-Félix Nothias,Frédéric Burdetet al. 2024 Pré-publication, Document de travail hal-04803350v1
Reproducible mass spectrometry data processing and compound annotation in MZmine 3 Tito Damiani,Steffen Heuckeroth,Aleksandr Smirnov,Olena Mokshyna,Corinna Brungset al. 2024 Pré-publication, Document de travail hal-04803384v1
Efficient generation of open multi-stage fragmentation mass spectral libraries Corinna Brungs,Robin Schmid,Steffen Heuckeroth,Aninda Mazumdar,Matúš Drexleret al. 2024 Pré-publication, Document de travail hal-04803118v1
Application of the RDF framework to integrate heterogenous experimental data of a large chemo- and biodiverse collection from a research collaborative project Frédéric Burdet,Pierre-Marie Allard,Louis-Félix Nothias,Olivier Kirchhoffer,Arnaud Gaudryet al. 2024 Pré-publication, Document de travail hal-04803394v1