Luca Ciandrini

Publications

Article dans une revue (18)

Incoherent feedback from coupled amino acids and ribosome pools generates damped oscillations in growing E. coli Rossana Droghetti,Philippe Fuchs,Ilaria Iuliani,Valerio Firmano,Giorgio Tallaricoet al. Nature Communications, 2025, 16 (1), pp.3063. ⟨10.1038/s41467-025-57789-4⟩ Article dans une revue hal-05406272v1
How total mRNA influences cell growth Ludovico Calabrese,Luca Ciandrini,Marco Cosentino Lagomarsino Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (21), ⟨10.1073/pnas.2400679121⟩ Article dans une revue hal-04945737v1
Optimal control of ribosome population for gene expression under periodic nutrient intake Clément Soubrier,Eric Foxall,Luca Ciandrini,Khanh Dao Duc Journal of the Royal Society Interface, 2024, 21 (212), pp.20230652. ⟨10.1098/rsif.2023.0652⟩ Article dans une revue hal-04789156v1
TASEPy: A Python-based package to iteratively solve the inhomogeneous exclusion process Luca Ciandrini,Richmond Crisostomo,Juraj Szavits-Nossan SciPost Physics Codebases, 2023, pp.22. ⟨10.21468/SciPostPhysCodeb.22⟩ Article dans une revue hal-04945758v1
Protein degradation sets the fraction of active ribosomes at vanishing growth Ludovico Calabrese,Jacopo Grilli,Matteo Osella,Christopher Kempes,Marco Cosentino Lagomarsinoet al. PLoS Computational Biology, 2022, 18 (5), pp.e1010059. ⟨10.1371/journal.pcbi.1010059⟩ Article dans une revue hal-03980452v1
Inferring efficiency of translation initiation and elongation from ribosome profiling Juraj Szavits-Nossan,Luca Ciandrini Nucleic Acids Research, 2020, 48, pp.9478 - 9490. ⟨10.1093/nar/gkaa678⟩ Article dans une revue hal-03980481v1
Rational programming of history-dependent logic in cellular populations Ana Zúñiga,Sarah Guiziou,Pauline Mayonove,Zachary Ben Meriem,Miguel Camachoet al. Nature Communications, 2020, 11 (1), pp.4758. ⟨10.1038/s41467-020-18455-z⟩ Article dans une revue inserm-02952457v1
Unraveling Molecular Interactions in Liquid–Liquid Phase Separation of Disordered Proteins by Atomistic Simulations Matteo Paloni,Rémy Bailly,Luca Ciandrini,Alessandro Barducci Journal of Physical Chemistry B, 2020, 124 (41), pp.9009-9016. ⟨10.1021/acs.jpcb.0c06288⟩ Article dans une revue hal-03334992v1
An equilibrium model for ribosome competition Pascal Rogalla,Timothy Rudge,Luca Ciandrini Physical Biology, 2019, 17 (1), pp.015002. ⟨10.1088/1478-3975/ab4fbc⟩ Article dans une revue hal-04945783v1
Driven transport on a flexible polymer with particle recycling: A model inspired by transcription and translation Lucas Dias Fernandes,Luca Ciandrini Physical Review E , 2019, 99 (5), pp.052409. ⟨10.1103/PhysRevE.99.052409⟩ Article dans une revue hal-01743450v1
Exclusion process subject to conformational size changes Yvan Rousset,Luca Ciandrini,Norbert Kern SciPost Physics, 2019, 6 (6), pp.077. ⟨10.21468/SciPostPhys.6.6.077⟩ Article dans une revue hal-04773708v1
Power series solution of the inhomogeneous exclusion process Juraj Szavits-Nossan,M. Carmen Romano,Luca Ciandrini Physical Review E : Statistical, Nonlinear, and Soft Matter Physics [2001-2015], 2018, 97, pp.052139. ⟨10.1103/PhysRevE.97.052139⟩ Article dans une revue hal-01737998v1
Deciphering mRNA Sequence Determinants of Protein Production Rate Juraj Szavits-Nossan,Luca Ciandrini,M. Carmen Romano Physical Review Letters, 2018, 120, pp.128101. ⟨10.1103/PhysRevLett.120.128101⟩ Article dans une revue hal-01585251v1
Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights Lucas Dias Fernandes,Alessandro de Moura,Luca Ciandrini Scientific Reports, 2017, 7, pp.17409. ⟨10.1038/s41598-017-17618-1⟩ Article dans une revue hal-01585262v1
Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation. Barbara Gorgoni,Luca Ciandrini,Matthew R Mcfarland,M Carmen Romano,Ian Stansfield Nucleic Acids Research, 2016, 44 (19), pp.9231-9244. ⟨10.1093/nar/gkw630⟩ Article dans une revue hal-02060317v1
Stepping and crowding of molecular motors: statistical kinetics from an exclusion process perspective Luca Ciandrini,M. Carmen Romano,Andrea Parmeggiani Biophysical Journal, 2014, 107 (5), pp.1176-1184. ⟨10.1016/j.bpj.2014.07.012⟩ Article dans une revue hal-01061351v1
Motor proteins traffic regulation by supply-demand balance of resources Luca Ciandrini,Izaak Neri,Jean-Charles Walter,Olivier Dauloudet,Andrea Parmeggiani Physical Biology, 2014, 11 (5), pp.056006. ⟨10.1088/1478-3975/11/5/056006⟩ Article dans une revue hal-01063014v1
Transport on a lattice with dynamical defects Francesco Turci,Andrea Parmeggiani,Estelle Pitard,M. Carmen Romano,Luca Ciandrini Physical Review E : Statistical, Nonlinear, and Soft Matter Physics [2001-2015], 2013, 87 (1), pp.012705. ⟨10.1103/PhysRevE.87.012705⟩ Article dans une revue hal-00816492v1

Pré-publication, Document de travail (1)

Biologically relevant finite-size effects in a driven lattice gas with particle pausing and dynamical defects Johannes Keisers,Lorenzo Vito Dal Zovo,Norbert Kern,Luca Ciandrini 2024 Pré-publication, Document de travail hal-04945892v1

Communication dans un congrès (15)

Driven transport on a polymer: a model inspired by transcription and translation Luca Ciandrini Rencontre de Physique Statistique, Jan 2018, Paris, France Communication dans un congrès hal-01938456v1
Codon bias and cost of ribosome usage Luca Ciandrini Statistical physics of cells and genomes, Marco Cosentino Lagomarsino (CNRS/Sorbonne; Paris and IFOM Milan), May 2018, Alghero, Italy Communication dans un congrès hal-01938405v1
Ribosome economics: Ribosome usage in translation initiation and elongation Luca Ciandrini Reverse mathematical methods for reconstructing molecular dynamics in single cell, Centro di Ricerca Matematica Ennio de Giorgi, Oct 2018, Pisa, Italy Communication dans un congrès hal-01935528v1
Deciphering mRNA sequence determinants of protein production rate Luca Ciandrini Biophysics: Today and Beyond, Joint Meeting GRISBI; Labex EpiGenMed; Labex NUMEV, Apr 2018, Montpellier, France Communication dans un congrès hal-01938431v1
Ribosome Economics: Ribosome usage, translation initiation and elongation Luca Ciandrini Integrative Cell Models for Disease Intervention, Banff International Research Station, Jun 2018, Banff, Canada Communication dans un congrès hal-01938095v1
Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights Luca Ciandrini Meeting of the International Physics of Living Systems (iPoLS) Network, Jun 2017, Paris, France Communication dans un congrès hal-01938945v1
A quantitative view on mRNA translation: the relative role of initiation and elongation Luca Ciandrini Quantitative Laws II: Physiology, ecology, interaction structures, collective behavior, Jun 2016, Como, Italy Communication dans un congrès hal-01939004v1
Cellular Tradeoff between Resources and Demand in gene Expression Luca Ciandrini Como Pohskrow, Oct 2016, Como, Italy Communication dans un congrès hal-01939053v1
Molecular Motors with a Stepping Cycle: From Theory to Experiments Luca Ciandrini Traffic and Granular Flow '13, Sep 2013, Julich, Germany. pp.619-627, ⟨10.1007/978-3-319-10629-8_70⟩ Communication dans un congrès hal-01103149v1
Transcript length as a main determinant of mRNA translation efficiency Luca Ciandrini Quantitative Methods in Gene Regulation III, Dec 2015, Cambridge, United Kingdom Communication dans un congrès hal-01939067v1
Ribosome recycling as a main determinant of experimental ribosome densities Luca Ciandrini EMBO fellows’ meeting, Jun 2015, Heidelberg, Germany Communication dans un congrès hal-01939095v1
Crowded mRNAs and translation efficiency: from theory to experiments and speculations Luca Ciandrini Chromosome Structure and Function: Experiments and Modeling, SISSA, Oct 2013, Trieste, Italy Communication dans un congrès hal-01939133v1
Stepping and crowding ofmolecular motors: from theory to mRNA translation Luca Ciandrini Paris Biological Physics Community Day, Dec 2013, Paris, France Communication dans un congrès hal-01939123v1
Fluctuations and cooperative properties of molecular motors: from theory to experiments Luca Ciandrini Traffic and Granular Flow '13, Sep 2013, Juelich, Germany Communication dans un congrès hal-01939150v1
Quantifying gene expression at the level of translation Luca Ciandrini Quantitative Laws of Genome Evolution, Jun 2013, Como, Italy Communication dans un congrès hal-01939022v1

Poster de conférence (2)

Predicting the steady-state rate of mRNA translation in protein biosynthesis Juraj Szavits-Nossan,Luca Ciandrini,Carmen Maria Romano 19th IUPAB congress and 11th EBSA congress, Jul 2017, Edinburgh, United Kingdom Poster de conférence hal-01938988v1
Genelength as a regulator for ribosome recruitmentand protein synthesis: theoretical insights Luca Ciandrini Protein Synthesis and Translational Control, Sep 2017, Heidelberg, Germany Poster de conférence hal-01938973v1