Ludovic Duvaux

Identifiants chercheurs

IdHAL :

ludovic-duvaux

ORCID :

0000-0003-0960-0312

IdRef :

150007264

VIAF :

204177176

ISNI :

0000000358448396

ResearcherID :

http://www.researcherid.com/rid/F-4479-2011

Présentation

Publications

Article dans une revue (16)

Phylogeny-driven pangenome analysis uncovers the genomic landscape of domesticated and wild Armeniaca species Ismael Blanchard,Quynh Trang Bui,Alexis Mergez,Sukanya Denni,Amandine Cornilleet al. Horticulture research, In press, ⟨10.1093/hr/uhag104⟩ Article dans une revue hal-05577186v1
A Strategy for Studying Epigenetic Diversity in Natural Populations: Proof of Concept in Poplar and Oak Isabelle Lesur Kupin,Odile Rogier,Mamadou Dia Sow,Christophe Boury,Alexandre Duplanet al. Journal of Experimental Botany, 2024, 75 (18), pp.5568-5584. ⟨10.1093/jxb/erae266⟩ Article dans une revue hal-04621404v1
Draft Genome Sequence of the Environmental Fungus Scedosporium dehoogii Jason Shiller,Ludovic Duvaux,Patrick Vandeputte,Christophe Lemaire,Amandine Rougeronet al. Mycopathologia, 2021, 186 (6), pp.889-892. ⟨10.1007/s11046-021-00582-w⟩ Article dans une revue hal-03356977v1
Threat to Asian wild apple trees posed by gene flow from domesticated apple trees and their pestified pathogens Alice Feurtey,Ellen Guitton,Marie de Gracia Coquerel,Ludovic Duvaux,Jason Shilleret al. Molecular Ecology, 2020, 29, pp.4925-4941. ⟨10.1111/mec.15677⟩ Article dans une revue hal-02972460v2
Ice-age climate adaptations trap the alpine marmot in a state of low genetic diversity Toni I. Gossmann,Achchuthan Shanmugasundram,Stefan Börno,Ludovic Duvaux,Christophe Lemaireet al. Current Biology, 2019, 29 (10), pp.1712-1720. ⟨10.1016/j.cub.2019.04.020⟩ Article dans une revue hal-02628739v1
Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturiapirina, Venturia aucupariae and Venturia asperata Bruno Le Cam,Dan Sargent,Jerome Gouzy,Joëlle Amselem,Marie-Noëlle Bellangeret al. G3, 2019, 9 (8), pp.2405-2414. ⟨10.1534/g3.119.400047⟩ Article dans une revue hal-02176962v1
Are assortative mating and genital divergence driven by reinforcement ? Johan Hollander,Mauricio Montaño-Rendón,Giuseppe Bianco,Xi Yang,Anja M. Westramet al. Evolution Letters, 2018, 2 (6), pp.557-566. ⟨10.1002/evl3.85⟩ Article dans une revue hal-02628918v1
Developing collaborative works for faster progress on fungal respiratory infections in cystic fibrosis Carsten Schwarz,Patrick Vandeputte,Amandine Rougeron,Sandrine Giraud,Thomas Dugé de Bernonvilleet al. Medical Mycology, 2018, 56 (suppl_1), pp.S42-S59. ⟨10.1093/mmy/myx106⟩ Article dans une revue (article de synthèse) hal-01789211v1
Targeted re-sequencing confirms the importance of chemosensory genes in aphid host race differentiation Isobel Eyres,Ludovic Duvaux,Karim Gharbi,Rachel Tucker,David Hopkinset al. Molecular Ecology, 2017, 26 (1), pp.43-58. ⟨10.1111/mec.13818⟩ Article dans une revue hal-01532713v1
Draft Genome Sequence of the Human-Pathogenic Fungus Scedosporium boydii Ludovic Duvaux,Jason Shiller,Patrick Vandeputte,Thomas Duge de Bernonville,Christopher Thorntonet al. Genome Announcements, 2017, 5 (37), ⟨10.1128/genomeA.00871-17⟩ Article dans une revue hal-02407748v1
Differential gene expression according to race and host plant in the pea aphid Isobel Eyres,Julie Jaquiéry,Akiko Sugio,Ludovic Duvaux,Karim Gharbiet al. Molecular Ecology, 2016, 25 (17), pp.4197-4215. ⟨10.1111/mec.13771⟩ Article dans une revue hal-01371828v1
The genetic structure of Nautilus pompilius populations surrounding Australia and the Philippines Rachel Williams,Benjamin Jackson,Ludovic Duvaux,Deborah Dawson,Terry Burkeet al. Molecular Ecology, 2015, 24 (13), pp.3316-3328. ⟨10.1111/mec.13255⟩ Article dans une revue hal-03282538v1
Dynamics of Copy Number Variation in Host Races of the Pea Aphid Ludovic Duvaux,Quentin Geissmann,Karim Gharbi,Jing-Jiang Zhou,Julia Ferrariet al. Molecular Biology and Evolution, 2015, 32 (1), pp.63-80. ⟨10.1093/molbev/msu266⟩ Article dans une revue hal-01945404v1
Human-facilitated metapopulation dynamics in an emerging pest species, Cimex lectularius Toby Fountain,Ludovic Duvaux,Gavin Horsburgh,Klaus Reinhardt,Roger Butlin Molecular Ecology, 2014, 23 (5), pp.1071-1084. ⟨10.1111/mec.12673⟩ Article dans une revue hal-03282533v1
Isolation and gene flow: inferring the speciation history of European house mice Ludovic Duvaux,Khalid Belkhir,Matthieu Boulesteix,Pierre Boursot Molecular Ecology, 2011, 20 (24), pp.5248-5264. ⟨10.1111/j.1365-294X.2011.05343.x⟩ Article dans une revue hal-02347818v1
Isolation and gene flow: inferring the speciation history of European house mice Ludovic Duvaux,K. Belkhir,Matthieu Boulesteix,P. Boursot Molecular Ecology, 2011, 20, pp.5248-5264. ⟨10.1111/j.1365-294X.2011.05343.x⟩ Article dans une revue hal-02299275v1

Communication dans un congrès (3)

The role of epigenetics in local adaptation in sessile oak trees: a population epigenetic association study Shannon Brandt,Alexandre Duplan,Isabelle Lesur Kupin,Odile Rogier,Mamadou Dia Sowet al. ESEB 2025 - The Evolutionary Biology Congress, Aug 2025, Barcelone, Spain Communication dans un congrès hal-05241621v1
Historical recombination maps estimated with two diverging european and asian populations on bread wheat 3B chromosome Alice Danguy Des Deserts,Ludovic Duvaux,Pierre Sourdille,Sophie Bouchet "Quantitative Genetics and Genomics" Gordon Research Conference, Gordon Research Conference., Feb 2019, Barga, Italy Communication dans un congrès hal-02289531v1
Developing omics approaches to elucidate pathogenic mechanisms in Scedosporium species N. Papon,P. Vandeputte,Ludovic Duvaux,Jason Shiller,Thomas Duge de Bernonvilleet al. Medical Mycology, International Society for Human and Animal Mycology (ISHAM). INT., Jun 2018, Amsterdam, Netherlands. 1 p, ⟨10.1093/mmy/myy036⟩ Communication dans un congrès hal-02735881v1

Poster de conférence (6)

The pangenome of European white oaks : A new approach to assess genetic diversity Florent Couturier,Lucien Piat,Sukanya Denni,Alexis Mergez,Gabriele Magriset al. Doctorales de la forêt, Feb 2025, Poitiers, France Poster de conférence hal-05219122v1
MSpangepop: Simulating complex structural variants under advanced demographic scenarios using the coalescent Lucien Piat,Sukanya Denni,Siegfried Dubois,Florent Couturier,Nicolas Lapaluet al. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. pp.1-1, 2025 Poster de conférence hal-05219528v1
GrAuFlow: A snakemake workflow for pangenome graph augmentation using short read data Antoine Malet,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournier,Pierre Gladieuxet al. Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM2025), Jul 2025, Bordeaux, France Poster de conférence hal-05209521v1
The role of epigenetics in local adaptation in oak trees: a population epigenetic analysis Shannon Brandt,Ludovic Duvaux,Isabelle Lesur,Odile Rogier,Mamadou Sowet al. 5th Epicatch meeting, Jul 2024, Bordeaux, France Poster de conférence hal-05228453v1
Epigenetic Variation in Tree Evolution: a case study in black poplar (Populus nigra) Mamadou Dia Sow,Odile Rogier,Isabelle Lesur,Christian Daviaud,Emile Mardocet al. Plant Epigenetics (EPIPLANT/SEB 2024), Jul 2024, Clermont-Ferrand, France. , Abstract book of EPIPLANT/SEB 2024, Session VI Chromatin in transcription, replication and repair (Poster #69), pp.131-132 Poster de conférence hal-05056784v1
Establishment of pangenome graphs for the analysis and monitoring of fungal plant pathogen populations Nicolas Lapalu,Antoine Loth,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournieret al. ISCLB 2024 International Symposium on Cereal Leaf Blights, Jun 2024, Zürich, Switzerland. ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-04623680v1

Ouvrages (1)

Vers une recherche reproductible Loic Desquilbet,Sabrina Granger,Boris Hejblum,Arnaud Legrand,Pascal Pernotet al. Unité régionale de formation à l'information scientifique et technique de Bordeaux. Unité régionale de formation à l'information scientifique et technique de Bordeaux, pp.1-161, 2019, 979-10-97595-05-0 Ouvrages hal-02144142v3

Pré-publication, Document de travail (3)

A roadmap for the adoption of pangenomics in agronomy Stéphanie Bocs,Camille Carrette,Johann Confais,Siegfried Dubois,Ludovic Duvauxet al. 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05357866v2
Phylogeny-driven pangenome analysis uncovers the genomic landscape of domesticated and wild Armeniaca species Ismael Blanchard,Quynh Trang Bui,Alexis Mergez,Sukanya Denni,Amandine Cornilleet al. 2026 Pré-publication, Document de travail hal-05450185v1
Epigenetic Variation in Tree Evolution: a case study in black poplar (Populus nigra) Mamadou Dia Sow,Odile Rogier,Isabelle Lesur,Christian Daviaud,Emile Mardocet al. 2023 Pré-publication, Document de travail hal-04170410v1