Luís Pedro Borges Araújo CNRS CRCN @ LBMC - ENS de Lyon

Identifiants chercheurs

IdHAL :

luis-pedro-borges-araujo

ORCID :

0000-0003-3004-7750

Publications

Article dans une revue (11)

Martini3-IDP: improved Martini 3 force field for disordered proteins Liguo Wang,Christopher Brasnett,Luís Borges-Araújo,Paulo C T Souza,Siewert J Marrink Nature Communications, 2025, 16 (1), pp.2874. ⟨10.1038/s41467-025-58199-2⟩ Article dans une revue hal-05377345v1
GōMartini 3: From large conformational changes in proteins to environmental bias corrections Paulo C T Souza,Luís Borges-Araújo,Christopher Brasnett,Rodrigo A Moreira,Fabian Grünewaldet al. Nature Communications, 2025, 16 (1), pp.4051. ⟨10.1038/s41467-025-58719-0⟩ Article dans une revue hal-05377343v1
The Martini 3 Lipidome: Expanded and Refined Parameters Improve Lipid Phase Behavior Kasper B Pedersen,Helgi I Ingólfsson,Daniel P Ramirez-Echemendia,Luís Borges-Araújo,Mikkel D Andreasenet al. ACS Central Science, 2025, 11 (9), pp.1598−1610. ⟨10.1021/acscentsci.5c00755⟩ Article dans une revue hal-04880477v2
Martini 3 building blocks for Lipid Nanoparticle design Lisbeth Ravnkilde Kjølbye,Mariana Valério,Markéta Paloncýová,Luís Borges-Araújo,Roberto Pestana-Nobleset al. Journal of Chemical Theory and Computation, 2025, ⟨10.26434/chemrxiv-2024-bf4n8⟩ Article dans une revue hal-04745118v1
The Martini 3 Lipidome: Expanded and Refined Parameters Improve Lipid Phase Behavior Kasper Pedersen,Helgi Ingólfsson,Daniel Ramirez-Echemendia,Luís Borges-Araújo,Mikkel Andreasenet al. ACS Central Science, 2025, 11 (9), pp.1598-1610. ⟨10.1021/acscentsci.5c00755⟩ Article dans une revue hal-05402465v1
Bartender: Martini 3 Bonded Terms via Quantum Mechanics-Based Molecular Dynamics Gilberto P Pereira,Riccardo Alessandri,Moisés Domínguez,Rocío Araya-Osorio,Linus Grünewaldet al. Journal of Chemical Theory and Computation, 2024, 20 (13), pp.5763-5773. ⟨10.1021/acs.jctc.4c00275⟩ Article dans une revue hal-04745117v1
OLIVES: A Go̅-like Model for Stabilizing Protein Structure via Hydrogen Bonding Native Contacts in the Martini 3 Coarse-Grained Force Field Kasper B Pedersen,Luís Borges-Araújo,Amanda D Stange,Paulo C. T. Souza,Siewert-Jan Marrinket al. Journal of Chemical Theory and Computation, 2024, ⟨10.1021/acs.jctc.4c00553⟩ Article dans une revue hal-04745097v1
Martini 3 Coarse-Grained Force Field for Cholesterol Luís Borges-Araújo,Ana C Borges-Araújo,Tugba Nur Ozturk,Daniel P Ramirez-Echemendia,Balázs Fábiánet al. Journal of Chemical Theory and Computation, 2023, 19 (20), pp.7387-7404. ⟨10.1021/acs.jctc.3c00547⟩ Article dans une revue hal-04296756v1
Pragmatic Coarse-Graining of Proteins: Models and Applications Luís Borges-Araújo,Ilias Patmanidis,Akhil Singh,Lucianna Santos,Adam Sieradzanet al. Journal of Chemical Theory and Computation, 2023, 19 (20), pp.7112-7135. ⟨10.1021/acs.jctc.3c00733⟩ Article dans une revue (article de synthèse) hal-04296801v1
Expulsion mechanism of the substrate-translocating subunit in ECF transporters Chancievan Thangaratnarajah,Mark Nijland,Luís Borges-Araújo,Aike Jeucken,Jan Rheinbergeret al. Nature Communications, 2023, 14 (1), pp.4484. ⟨10.1038/s41467-023-40266-1⟩ Article dans une revue hal-04296762v1
Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field Luís Borges-Araújo,Paulo Souza,Fábio Fernandes,Manuel Melo Journal of Chemical Theory and Computation, 2022, 18 (1), pp.357-373. ⟨10.1021/acs.jctc.1c00615⟩ Article dans une revue hal-03864628v1

Pré-publication, Document de travail (2)

GōMartini 3: From large conformational changes in proteins to environmental bias corrections Paulo C T Souza,Luís Borges-Araújo,Chris Brasnett,Rodrigo A Moreira,Fabian Grünewaldet al. 2024 Pré-publication, Document de travail hal-04745078v1
OLIVES: A Go-like Model for Stabilizing Protein Structure via Hydrogen Bonding Native Contacts in the Martini 3 Coarse-Grained Force Field Kasper B Pedersen,Luís Borges-Araújo,Amanda D Stange,Paulo C T Souza,Siewert-Jan Marrinket al. 2023 Pré-publication, Document de travail hal-04296793v1