Magali LESCOT IRHC CNRS BAP E - Cheffe de projet en bioinformatique et génomique environnementale marine - Responsable des services web: https://tara-oceans.mio.osupytheas.fr/

Identifiants chercheurs

IdHAL :

magali-lescot

ORCID :

0000-0001-8189-0823

IdRef :

074233513

VIAF :

203123139

ISNI :

0000000358036682

Présentation

Postes occupés

2006-2016 – Ingénieur de recherche en bioinformatique microbienne – CNRS, IGS, Aix-Marseille Université, Marseille

2004-2005 – Chercheur en bioinformatique et génomique des plantes tropicales – CIRAD, Montpellier

2003 – Post-Doctorant en bioinformatique – INSERM, Marseille

2001-2003 – ATER en bioinformatique – IBDML, Marseille

1999-2001 – Doctorant en bioinformatique – Université de Leuven et Gand, Belgique

1997-1998 – Ingénieur en biologie moléculaire et biotechnologie végétale – Ohio State University, Colombus, OHIO, USA

Cursus

2002 – Doctorat bioinformatique, biologie structurale et génomique – AMU, Marseille

2001 – DEA Bioinformatique – Université Notre dame de la paix namur, Belgique

1997 – Diplome d’ingénieur agronome – ENSAIA, Nancy

1995 – Maitrise biochimie et génétique du développement – AMU, Marseille

Publications

Article dans une revue (31)

A holistic perspective on planktonic communities across the Northwestern Mediterranean Sea Magali Lescot,Nolan Lezzoche,Louise Laux,Sarah Romac,Loïc Guillouxet al. Frontiers in Marine Science, 2026, 13, pp.1755855. ⟨10.3389/fmars.2026.1755855⟩ Article dans une revue hal-05594720v1
Indexer les données génomiques : un défi de taille à relever Téo Lemane,Magali Lescot,Pierre Peterlongo Interstices, 2024, pp.1-5 Article dans une revue hal-04757321v1
First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices Mathilde Dugenne,Marco Corrales-Ugalde,Jessica Luo,Rainer Kiko,Todd O'Brienet al. Earth System Science Data, 2024, 16 (6), pp.2971-2999. ⟨10.5194/essd-16-2971-2024⟩ Article dans une revue hal-04648046v1
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA Téo Lemane,Nolan Lezzoche,Julien Lecubin,Eric Pelletier,Magali Lescotet al. Nature Computational Science, 2024, 4 (2), pp.104-109. ⟨10.1038/s43588-024-00596-6⟩ Article dans une revue hal-04489740v1
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean Tom Delmont,Morgan Gaia,Damien Hinsinger,Paul Frémont,Chiara Vanniet al. Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩ Article dans une revue hal-03872935v2
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes Caroline Vernette,Julien Lecubin,Pablo Sánchez,(team) Tara Oceans Coordinators,Shinichi Sunagawaet al. Nucleic Acids Research, 2022, 11, ⟨10.1093/nar/gkac420⟩ Article dans une revue hal-03696136v1
Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective Youri Timsit,Magali Lescot,Martha Valiadi,Fabrice Not International Journal of Molecular Sciences, 2021, 22 (21), pp.11311. ⟨10.3390/ijms222111311⟩ Article dans une revue hal-03402318v1
The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms. Caroline Vernette,Nicolas Henry,Julien Lecubin,Colomban de Vargas,Pascal Hingampet al. Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13322⟩ Article dans une revue hal-03115219v1
Diversity and evolution of bacterial bioluminescence genes in the global ocean Thomas Vannier,Pascal Hingamp,Floriane Turrel,Lisa Tanet,Magali Lescotet al. NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa018⟩ Article dans une revue hal-02514159v1
Tara Oceans: towards global ocean ecosystems biology Shinichi Sunagawa,Silvia Acinas,Peer Bork,Chris Bowler,Silvia Acinaset al. Nature Reviews Microbiology, 2020, 18 (8), pp.428-445. ⟨10.1038/s41579-020-0364-5⟩ Article dans une revue hal-04394809v1
Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Luigi Caputi,Quentin Carradec,Damien Eveillard,Amos Kirilovsky,Éric Pelletieret al. Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩ Article dans une revue hal-02999805v1
The Ocean Gene Atlas: exploring the biogeography of plankton genes online Emilie Villar,Thomas Vannier,Caroline Vernette,Magali Lescot,Miguelangel Cuencaet al. Nucleic Acids Research, 2018, 46 (W1), pp.gky376. ⟨10.1093/nar/gky376⟩ Article dans une revue hal-01803597v1
H4K44 Acetylation Facilitates Chromatin Accessibility during Meiosis Matthieu Legendre,Audrey Lartigue,Lionel Bertaux,Sandra Jeudy,Julia Bartoliet al. Cell Reports, 2015, 13 (9), pp.1772-1780. ⟨10.1016/j.celrep.2015.10.070⟩ Article dans une revue hal-02193350v1
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages Magali Lescot,Pascal Hingamp,Kenji K Kojima,Emilie Villar,Sarah Romacet al. The International Society of Microbiologial Ecology Journal, 2015, 10 (5), pp.1134-1146. ⟨10.1038/ismej.2015.192⟩ Article dans une revue hal-01258212v1
In-depth study of Mollivirus sibericum , a new 30,000-y-old giant virus infecting Acanthamoeba Matthieu Legendre,Audrey Lartigue,Lionel Bertaux,Sandra Jeudy,Julia Bartoliet al. Proceedings of the National Academy of Sciences of the United States of America, 2015, 112, pp.E5327 - E5335. ⟨10.1073/pnas.1510795112⟩ Article dans une revue cea-01825900v1
Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton Peter von Dassow,Uwe John,Hiroyuki Ogata,Ian Probert,El Mahdi Bendifet al. The International Society of Microbiologial Ecology Journal, 2015, 9 (6), pp.1365-1377. ⟨10.1038/ismej.2014.221⟩ Article dans une revue hal-01245155v1
Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes Sebastien Santini,Sandra Jeudy,Julia Bartoli,Olivier Poirot,Magali Lescotet al. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (26), pp.10800-10805. ⟨10.1073/pnas.1303251110⟩ Article dans une revue hal-05370967v1
Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes S. Santini,J. Bartoli,O. Poirot,Magali Lescot,C. Abergelet al. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (26), pp.10800-10805. ⟨10.1073/pnas.1303251110⟩ Article dans une revue hal-02978222v1
Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes Nadège Philippe,Matthieu Legendre,Gabriel Doutre,Yohann Couté,Olivier Poirotet al. Science, 2013, 341 (6143), pp.281-286. ⟨10.1126/science.1239181⟩ Article dans une revue cea-00862677v1
The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella Stéphane Audic,Magali Lescot,Jean-Michel Claverie,Axel Cloeckaert,Michel S. Zygmunt BMC Evolutionary Biology, 2011, 11, pp.200. ⟨10.1186/1471-2148-11-200⟩ Article dans une revue hal-01258246v1
mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus Matthieu Legendre,Stéphane Audic,Olivier Poirot,Pascal Hingamp,Virginie Seltzeret al. Genome Research, 2010, 20 (5), pp.664 - 674. ⟨10.1101/gr.102582.109⟩ Article dans une revue hal-03894299v1
The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii Magali Lescot,Stephane Audic,Catherine Robert,Thi Tien Nguyen,Guillaume Blancet al. PLoS Genetics, 2008, 4 (9), pp.e1000185. ⟨10.1371/journal.pgen.1000185⟩ Article dans une revue hal-02978141v1
A Single Banana Streak Virus Integration Event in the Banana Genome as the Origin of Infectious Endogenous Pararetrovirus Philippe Gayral,Juan-Carlos Noa-Carrazana,Magali Lescot,Fabrice Lheureux,Benham Lockhartet al. Journal of Virology, 2008, 82 (13), pp.6697-6710. ⟨10.1128/JVI.00212-08⟩ Article dans une revue hal-02978140v1
Insights into the Musa genome: Syntenic relationships to rice and between Musa species Magali Lescot,Pietro Piffanelli,Ana Ciampi,Manuel Ruiz,Guillaume Blancet al. BMC Genomics, 2008, 9 (1), ⟨10.1186/1471-2164-9-58⟩ Article dans une revue hal-02978134v1
Phylogeny.fr: robust phylogenetic analysis for the non-specialist Alexis Dereeper,Valentin Guignon,Guillaume Blanc,Stéphane Audic,Sylvain Buffetet al. Nucleic Acids Research, 2008, 36 (Web Server), pp.W465-W469. ⟨10.1093/nar/gkn180⟩ Article dans une revue lirmm-00324099v1
Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements Magali Lescot,S. Rombauts,J. Zhang,S. Aubourg,C. Mathéet al. TAG Theoretical and Applied Genetics, 2004, 109 (1), pp.10-22. ⟨10.1007/s00122-004-1621-0⟩ Article dans une revue istex hal-02978143v1
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes Gert Thijs,Kathleen Marchal,Magali Lescot,Stephane Rombauts,Bart de Mooret al. Journal of Computational Biology, 2002, 9 (2), pp.447-464. ⟨10.1089/10665270252935566⟩ Article dans une revue hal-02978260v1
Effect of auxin, cytokinin, and sucrose on cell cycle gene expression in Arabidopsis thaliana cell suspension cultures Caroline Richard,Magali Lescot,Dirk Inzé,Lieven de Veylder Plant Cell, Tissue and Organ Culture, 2002, 69 (2), pp.167-176. ⟨10.1023/a:1015241709145⟩ Article dans une revue istex hal-02964689v1
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Magali Lescot,Patrice Dehais,G. Thijs,K. Marchal,Y. Moreauet al. Nucleic Acids Research, 2002, 30 (1), pp.325-327. ⟨10.1093/nar/30.1.325⟩ Article dans une revue hal-02978179v1
Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene Emmanuel Guiderdoni,Maria José Cordero,Florence Vignols,José Manuel Garcia-Garrido,Magali Lescotet al. Plant Molecular Biology, 2002, 49 (6), pp.679-695. ⟨10.1023/a:1015595100145⟩ Article dans une revue hal-02978251v1
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling G. Thijs,Magali Lescot,K. Marchal,S. Rombauts,B. de Mooret al. Bioinformatics, 2001, 17 (12), pp.1113-1122. ⟨10.1093/bioinformatics/17.12.1113⟩ Article dans une revue hal-02978262v1

Pré-publication, Document de travail (3)

Deviation from Power-Law Distribution when Scaling the Distribution of Marine Plankton Folds from Genomes to Communities Lucas Pavlovic,Caroline Vernette,Emanuele Pigani,Louis Joigneaux,Alexandre Labesseet al. 2025 Pré-publication, Document de travail hal-05038679v1
kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets Téo Lemane,Nolan Lezzoche,Julien Lecubin,Eric Pelletier,Magali Lescotet al. 2026 Pré-publication, Document de travail cea-04321497v1
Equatorial to Polar genomic variability of the microalgae &lt;i&gt;Bathycoccus prasinos&lt;/i&gt; Jade Leconte,Youri Timsit,Tom O Delmont,Magali Lescot,Gwenael Piganeauet al. 2023 Pré-publication, Document de travail (preprint/prepublication) hal-04308022v1

Rapport (1)

Biological applications of the satellite Surface Water and Ocean Topography in the Mediterranean Andrea M. Doglioli,Gérald Grégori,Francesco d'Ovidio,Anthony Bosse,Elvira Pulido-Villenaet al. Ref. Rapport de campagne, Université Aix Marseille. 2024 Rapport hal-04737346v1

Communication dans un congrès (1)

Insights into the genome of Musa (banana), a giant herb bearing fleshy fruits Angélique d'Hont,Pietro Piffanelli,Magali Lescot,Chris Town,Jim Leebens-Macket al. 17. Conference Plant & Animal Genomes, Jan 2009, San Diego, United States Communication dans un congrès hal-02756111v1