Mahendra Mariadassou
130
Documents
Publications
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Addition of dairy lipids and probiotic in infant formulas modulates gut microbiota and intestinal physiology with long-term consequences; a preclinical study in a minipig model15. Congress of the international society for the study of fatty acids and lipids (ISSFAL), Jul 2023, Nantes, France
Conference papers
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MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheesesFORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France
Conference papers
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Milk microbiota: potential allies for mammary gland healthADSA annual meeting 2023, American Dairy Science Association, Jun 2023, Ottawa, Canada. pp.146
Conference papers
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Nitric Oxide impacts human gut microbiota diversity and functionalities9. Microbiome and probiotics R & D and business collaboration, Oct 2021, Rotterdam, Netherlands
Conference papers
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Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosisJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France
Conference papers
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Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosisJOBIM, Jul 2021, Paris, France
Conference papers
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Membre du comité d'organisation scientifiqueSéminaire de lancement du métaprogramme HOLOFLUX, Nov 2019, Nantes, France
Conference papers
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Caractérisation et modélisation des populations de bactériophages de la croûte de fromages (type époisses) sous différentes conditions environnementales d’affinage15. Congrès de la Société Française de Microbiologie (SFM), Société Française de Microbiologie (SFM). FRA., Sep 2019, Paris, France
Conference papers
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Shifts in the temperature sensitivity periods for two forest tree species under warming climatic conditionsEGU General Assembly 2019, Apr 2019, Vienna, Austria
Conference papers
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Variational Inference for sparse network reconstruction from count dataICML 2019 International Conference on Machine Learning, Jun 2019, Long Beach, United States
Conference papers
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Is skeletal muscle remodeling associated with gut microbiota signature?6th World Congress on Targeting Microbiota, Oct 2018, Porto, Portugal. pp.1
Conference papers
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A metagenomic tool for cheese ecosystems17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athenes, Greece
Conference papers
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Sweet cherry phenology in the context of climate change: a systems biology approachCOST Cherry FA1104 Working Group 2 Cherry Phenology, Modelling and Climate Change, International Society for Horticultural Science (ISHS). INT., 2017, Ullensvang, Norway. ⟨10.17660/ActaHortic.2017.1162.6⟩
Conference papers
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Food-Microbiomes Transfert, a shotgun metagenomic tool and a database to analyze cheese ecosystemsJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France
Conference papers
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FORTRESS : Impact of microbial diversity on the barrier effect against an exogenous species2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Conference papers
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Genomics of Chicken Domestication10. European Symposium on Poultry Genetics, Jun 2017, Saint Malo, France
Conference papers
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Équivalence asymptotique des vraisemblances observée et complète dans le modèle de blocs latentsXXIV èmes Rencontres de la Société Francophone de Classification, Société Francophone de Classification, Jun 2017, Lyon, France
Conference papers
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Statistical analysis of trends in sweet cherry flowering data across Europe10. International Symposium on Modelling in Fruit Research and Orchard Management, 2017, Leuven, Belgium. ⟨10.17660/ActaHortic.2017.1160.31⟩
Conference papers
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Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystemsPhages On Marseille, Nov 2016, Marseille, France. pp.1
Conference papers
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Normalité asymptotique de l’estimateur du maximum de vraisemblance dans le modèle de blocs latents48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France
Conference papers
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Quantitative prediction of genome-wide resource allocation in bacteriaISGSB 2016: International Study Group for Systems Biology, Oct 2016, Jena, Germany
Conference papers
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Flowering time response to temperature in sweet cherry across Europe: multi-cultivar and multi-environment analysis8. International Rosaceae Genomics Conference (RGC8), Jun 2016, Angers, France
Conference papers
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Find Rapidly OTU with Galaxy SolutionJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France
Conference papers
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Analyse statistique de données multisites de floraison pour le cerisier douxColloque Francophone Phénologie, Nov 2015, Clermont Ferrand, France
Conference papers
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Statistical analysis of trends in Sweet Cherry flowering data across Europe10. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France
Conference papers
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The specificity - abundance relationship in microbial communitiesECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gothenburg, Sweden. pp.1
Conference papers
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Dominant Species are SpecialistsECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gôteborg, Sweden. pp.1
Conference papers
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Uncovering latent structure in valued graphs: a variational approachProbability and Discrete Mathematics in Mathematical Biology, May 2011, Singapore, Singapore. 47 diapos
Conference papers
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Influence function for robust phylogenetic reconstructionJOBIM 2011, Jun 2011, Paris, France. pp.422
Conference papers
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Fonction d'influence pour la reconstruction de phylogénies robustes42èmes Journées de Statistique, 2010, Marseille, France. pp.USB-key
Conference papers
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Exploration of dairy cow holobiont revealed an important sharing of microbes between anatomic sites within individual hosts throughout lactation but sharing was limited in the herdhttps://www.adsa.org/Meetings/2023-Annual-Meeting. ADSA annual meeting 2023, Jun 2023, Ottawa, Canada. , 2023
Conference poster
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Microbial transfers across a food chain: from grassland to cheese using metagenetic high-throughput sequencing approachesFORUM ON FERMENTED FOODS, May 2023, Lyon, France
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Combining marker genes in amplicon sequencing: a novel approach enhancing taxonomic profiling of microbial ecosystems3rd International Conference on Holobionts, Jul 2022, Lyon, France. 2022
Conference poster
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Conference poster
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New insights into cow holobiont in relation to heath16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France
Conference poster
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021
Conference poster
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New insights into cow holobiont in relation to healthJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. , 2020
Conference poster
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Conference poster
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Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?Conference poster hal-03451271v1 |
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel WasteJOBIM, Jun 2020, Montpellier, France
Conference poster
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Feedback on a c omparative metatranscriptomic analysisJOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019
Conference poster
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New insights into cow holobiont in relation to healthPathobiome 2018 "Pathogens in Microbiotas in Hosts", Jan 2018, Ajaccio, France
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Design de communautés bactériennes pour fermenter un nouvel aliment associant lait et légumineuseConference poster hal-01902837v1 |
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic dataJOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018
Conference poster
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Comparison of statistical methods of inference of cooccurrence networks within micro- bial ecosystems from metagenomics dataJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017
Conference poster
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Design of bacterial consortia for fermentation of novel food mixing milk and lupin flour4. International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. 2017
Conference poster
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Simka: large scale de novo comparative metagenomicsJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 LILLE
Conference poster
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Cheese ecosystems insights with shotgun metagenomics and a metadata extended genomics database.JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 2016
Conference poster
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Approche génomique de la domestication du poulet11. Journées de la Recherches Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. , 2015, Onzièmes Journées de la Recherche Avicole et Palmipèdes à Foie Gras
Conference poster
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichiiConference poster hal-01170054v1 |
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How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Conference poster
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of [i]Propionibacterium freudenreichii[/i]JOBIM 16.Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Conference poster
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Accurate taxonomy assignments in cheeses ecosystems via a metagenomic approachJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.1, 2015
Conference poster
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FROGS : Find Rapidly OTUs with Galaxy SolutionColloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics
Conference poster
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Insight in the genetic diversity of wild and domestic [i]Gallus[/i]14. European Poultry Conference, Jun 2014, Stavanger, Norway. 2014
Conference poster
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Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of[i] Propionibacterium freudenreichii[/i]Conference poster hal-01209420v1 |
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Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of Propionibacterium freudenreichiiJournées des Microbiologistes de l'INRA 2012, Nov 2012, L'Isle-sur-la-Sorgue, France. 2012
Conference poster
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Le modèle Poisson log-normal pour l’analyse de distributions jointes d’abondanceNathalie Peyrard; Olivier Gimenez. Approches statistiques pour les variables cachées en écologie, ISTE Éditions, 2022, 9781789480474
Book sections
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Tree Evaluation and Robustness TestingEncyclopedia of Bioinformatics and Computational Biology, 2, Elsevier, pp.736-745, 2019, ⟨10.1016/B978-0-12-809633-8.20259-8⟩
Book sections
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FROGS : Find Rapidly OTU with Galaxy Solution2017
Other publications
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Characterizing the limits of shallow shotgun metagenomics for taxonomic profiling of human gut microbiota in clinical studies2022
Preprints, Working Papers, ...
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Multiple Comparative Metagenomics using Multiset k-mer Counting2016
Preprints, Working Papers, ...
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Assessing the Distribution Consistency of Sequential Data2009
Preprints, Working Papers, ...
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Variational inference for probabilistic Poisson PCA[University works] auto-saisine. 2017
Reports
hal-01608912v1
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Équivalence asymptotique des vraisemblances observée et complète dans le modèle de blocs latents[Travaux universitaires] auto-saisine. 2017
Reports
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Robustess of Phylogenetic TreesMathematics [math]. Université Paris Sud - Paris XI, 2009. English. ⟨NNT : ⟩
Theses
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FROGS Training on Galaxy : Statistics to Explore MetagenomicsTraining on Galaxy : Statistics to Explore Metagenomics - FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 116 p
Lectures
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FROGS Training on Galaxy : Metagenomics November 2017Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p
Lectures
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