Mahendra Mariadassou
Publications
Publications
An advanced stochastic framework for the simulation of transgenerational hologenomic dataJOBIM, Jul 2025, Bordeaux (FR), France |
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Rétrospective FROGS 2015–2025Symposium FROGSDays, INRAE Toulouse, Dec 2025, Castanet Tolosan, France |
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Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome dataRencontres R, Société Française de Statistique, Jun 2024, Vannes, France |
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Zero-inflation in the MPLN Family55èmes journées de la statistique, May 2024, Bordeaux, France |
Drivers of microbial diversity in French Protected designation of Origin (PDO) cheesesIDF World Dairy Science, Oct 2024, Paris, France |
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Milk microbiota: potential allies for mammary gland healthADSA annual meeting 2023, American Dairy Science Association, Jun 2023, Ottawa, Canada. pp.146 |
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Addition of dairy lipids and probiotic in infant formulas modulates gut microbiota and intestinal physiology with long-term consequences; a preclinical study in a minipig model15. Congress of the international society for the study of fatty acids and lipids (ISSFAL), Jul 2023, Nantes, France |
MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheesesFORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France |
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Origins and rate of mutations in bacteriophage LambdaPhages in Lyon 2023, phages.fr, Nov 2023, Lyon, France |
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Microbial transfers at the crossroads of agro-ecological transitions in dairy systemsCarrefours de l’innovation agronomique (CIAG) Les indicateurs de qualité des sols et leur usage dans un contexte de transitions agricoles, Nov 2022, Orléans, France |
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Nitric Oxide impacts human gut microbiota diversity and functionalities9. Microbiome and probiotics R & D and business collaboration, Oct 2021, Rotterdam, Netherlands |
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Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosisJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France |
Shifts in the temperature sensitivity periods for two forest tree species under warming climatic conditionsEGU General Assembly 2019, Apr 2019, Vienna, Austria |
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Caractérisation et modélisation des populations de bactériophages de la croûte de fromages (type époisses) sous différentes conditions environnementales d’affinage15. Congrès de la Société Française de Microbiologie (SFM), Société Française de Microbiologie (SFM). FRA., Sep 2019, Paris, France |
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Membre du comité d'organisation scientifiqueSéminaire de lancement du métaprogramme HOLOFLUX, Nov 2019, Nantes, France |
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Is skeletal muscle remodeling associated with gut microbiota signature?6th World Congress on Targeting Microbiota, Oct 2018, Porto, Portugal. pp.1 |
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Ecological modelling of phage, bacterial and yeast populations structure in Epoisses cheese under changing ripening conditions using factorial experimental design and metavirome analysisMD 2019 : 5th International Conference on Microbial Diversity, Sep 2019, Catania, Italy |
Variational Inference for sparse network reconstruction from count dataICML 2019 International Conference on Machine Learning, Jun 2019, Long Beach, United States |
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A metagenomic tool for cheese ecosystems17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athenes, Greece |
A Walk Along Models for Count Data in Microbial EcologyRecent Computational Advances in Metagenomics (RCAM) 2018, Sep 2018, Athènes, Greece |
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Sweet cherry phenology in the context of climate change: a systems biology approachCOST Cherry FA1104 Working Group 2 Cherry Phenology, Modelling and Climate Change, International Society for Horticultural Science (ISHS). INT., 2017, Ullensvang, Norway. ⟨10.17660/ActaHortic.2017.1162.6⟩ |
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Food-Microbiomes Transfert, a shotgun metagenomic tool and a database to analyze cheese ecosystemsJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France |
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Statistical analysis of trends in sweet cherry flowering data across Europe10. International Symposium on Modelling in Fruit Research and Orchard Management, 2017, Leuven, Belgium. ⟨10.17660/ActaHortic.2017.1160.31⟩ |
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Équivalence asymptotique des vraisemblances observée et complète dans le modèle de blocs latentsXXIV èmes Rencontres de la Société Francophone de Classification, Société Francophone de Classification, Jun 2017, Lyon, France |
FORTRESS : Impact of microbial diversity on the barrier effect against an exogenous species2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France |
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Genomics of Chicken Domestication10. European Symposium on Poultry Genetics, Jun 2017, Saint Malo, France |
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Quantitative prediction of genome-wide resource allocation in bacteriaISGSB 2016: International Study Group for Systems Biology, Oct 2016, Jena, Germany |
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Normalité asymptotique de l’estimateur du maximum de vraisemblance dans le modèle de blocs latents48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France |
Flowering time response to temperature in sweet cherry across Europe: multi-cultivar and multi-environment analysis8. International Rosaceae Genomics Conference (RGC8), Jun 2016, Angers, France |
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Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystemsPhages On Marseille, Nov 2016, Marseille, France. pp.1 |
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Find Rapidly OTU with Galaxy SolutionJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France |
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Statistical analysis of trends in Sweet Cherry flowering data across Europe10. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France |
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Analyse statistique de données multisites de floraison pour le cerisier douxColloque Francophone Phénologie, Nov 2015, Clermont Ferrand, France |
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Dominant Species are SpecialistsECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gôteborg, Sweden. pp.1 |
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The specificity - abundance relationship in microbial communitiesECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gothenburg, Sweden. pp.1 |
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Uncovering latent structure in valued graphs: a variational approachProbability and Discrete Mathematics in Mathematical Biology, May 2011, Singapore, Singapore. 47 diapos |
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Influence function for robust phylogenetic reconstructionJOBIM 2011, Jun 2011, Paris, France. pp.422 |
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Fonction d'influence pour la reconstruction de phylogénies robustes42èmes Journées de Statistique, 2010, Marseille, France. pp.USB-key |
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Microbial transfers in dairy systems under changing climate and farming practicesJOBIM 20025, Jul 2025, Bordeaux, France |
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Microbial transfers in dairy systems under changing climate and farming practicesFROGS Days, Dec 2025, Toulouse, France |
Deciphering and cataloging the genomic and functional diversity of the French cheese microbiotaWDS 2024, Oct 2024, Paris, France |
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Microbial transfers across a food chain: from grassland to cheese using metagenetic high-throughput sequencing approachesFORUM ON FERMENTED FOODS, May 2023, Lyon, France |
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Exploration of dairy cow holobiont revealed an important sharing of microbes between anatomic sites within individual hosts throughout lactation but sharing was limited in the herdhttps://www.adsa.org/Meetings/2023-Annual-Meeting. ADSA annual meeting 2023, Jun 2023, Ottawa, Canada. , 2023 |
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomicsISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland. |
Combining marker genes in amplicon sequencing: a novel approach enhancing taxonomic profiling of microbial ecosystems3rd International Conference on Holobionts, Jul 2022, Lyon, France. 2022 |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022 |
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Rôle du microbiote dans la relation entre activité physique, santé et bien-êtreJournées d'Animation Scientifiques du Département PHASE, May 2022, Poitiers, France. 317, pp.E158 - E171 |
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A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processesJOBIM 2021 (JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2021, Paris, France. |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021 |
Gut microbiota and skeletal muscle crosstalk : lessons from muscle remarkable phenotypes.19. Congress of Association of Researchers in Physical and Sport Activities ACAPS, Nov 2021, Montpellier, France |
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New insights into cow holobiont in relation to heath16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020 |
New insights into cow holobiont in relation to healthJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. , 2020 |
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Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?JOBIM, Jun 2020, Montpellier, France. |
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel WasteJOBIM, Jun 2020, Montpellier, France |
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Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics dataAD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands |
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Feedback on a c omparative metatranscriptomic analysisJOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019 |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019 |
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Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromesPhages in Grenoble, Oct 2019, Grenoble, France. |
New insights into cow holobiont in relation to healthPathobiome 2018 "Pathogens in Microbiotas in Hosts", Jan 2018, Ajaccio, France |
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Design de communautés bactériennes pour fermenter un nouvel aliment associant lait et légumineuseRFL2, 2e Rencontres Francophones sur les Légumineuses, Oct 2018, Toulouse, France. , 2018 |
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic dataJOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018 |
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Comparison of statistical methods of inference of cooccurrence networks within micro- bial ecosystems from metagenomics dataJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 |
Simka: large scale de novo comparative metagenomicsJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 LILLE |
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Design of bacterial consortia for fermentation of novel food mixing milk and lupin flour4. International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. 2017 |
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Cheese ecosystems insights with shotgun metagenomics and a metadata extended genomics database.JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 2016 |
How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015 |
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of <i>Propionibacterium freudenreichii</i>JOBIM 16. Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015, ⟨10.1186/s12864-015-1467-7⟩ |
Accurate taxonomy assignments in cheeses ecosystems via a metagenomic approachJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.1, 2015 |
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FROGS : Find Rapidly OTUs with Galaxy SolutionColloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics |
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. , 2015 |
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Approche génomique de la domestication du poulet11. Journées de la Recherches Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. , 2015, Onzièmes Journées de la Recherche Avicole et Palmipèdes à Foie Gras |
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Insight in the genetic diversity of wild and domestic [i]Gallus[/i]14. European Poultry Conference, Jun 2014, Stavanger, Norway. 2014 |
Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of Propionibacterium freudenreichiiJournées des Microbiologistes de l'INRA 2012, Nov 2012, L'Isle-sur-la-Sorgue, France. 2012 |
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Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of[i] Propionibacterium freudenreichii[/i]Journées ouvertes en biologie informatique mathématiques, Jul 2012, Rennes, France. , 2012 |
The Poisson Log-Normal Model: A Generic Framework for Analyzing Joint Abundance DistributionsNathalie Peyrard; Olivier Gimenez. Statistical approaches for hidden variables in ecology, Wiley, 2022 |
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Le modèle Poisson log-normal pour l’analyse de distributions jointes d’abondanceNathalie Peyrard; Olivier Gimenez. Approches statistiques pour les variables cachées en écologie, ISTE Éditions, 2022, 9781789480474 |
Tree Evaluation and Robustness TestingEncyclopedia of Bioinformatics and Computational Biology, 2, Elsevier, pp.736-745, 2019, ⟨10.1016/B978-0-12-809633-8.20259-8⟩ |
FROGS : Find Rapidly OTU with Galaxy Solution2017 |
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Variational inference for probabilistic Poisson PCA[University works] auto-saisine. 2017 |
Équivalence asymptotique des vraisemblances observée et complète dans le modèle de blocs latents[Travaux universitaires] auto-saisine. 2017 |
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Robustess of Phylogenetic TreesMathematics [math]. Université Paris Sud - Paris XI, 2009. English. ⟨NNT : ⟩ |
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FROGS Training on Galaxy : Metagenomics November 2017Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p |
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FROGS Training on Galaxy : Statistics to Explore MetagenomicsTraining on Galaxy : Statistics to Explore Metagenomics - FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 116 p |