Mahendra Mariadassou

Publications

Article dans une revue (68)

Alterations in gut microbiota characteristics along a type 2 diabetes risk gradient linked with family history Oscar Gitton-Quent,Mathilde Sola,Nicolas Maziers,Anne Hiol,Nicolas Dechampet al. Gut Microbes Reports, 2025, 2 (1), ⟨10.1080/29933935.2025.2527766⟩ Article dans une revue (data paper) hal-05279637v1
The cutting type of vegetables influences the spontaneous fermentation rate Florence Valence,Romane Junker,Céline Baty,Olivier Rué,Mahendra Mariadassouet al. Peer Community In Microbiology, 2025, ⟨10.24072/pcjournal.553⟩ Article dans une revue hal-04701063v3
Simulating transgenerational hologenomes under selection with RITHMS Solène Pety,Ingrid David,Andrea Rau,Mahendra Mariadassou Peer Community In Mathematical and Computational Biology, 2025, ⟨10.24072/pci.mcb.100417⟩ Article dans une revue hal-05461768v1
Zero-inflation in the multivariate poisson lognormal family Bastien Batardière,Julien Chiquet,François Gindraud,Mahendra Mariadassou Statistics and Computing, 2025, 35 (6), pp.196. ⟨10.1007/s11222-025-10729-0⟩ Article dans une revue hal-05579456v1
A comprehensive, large-scale analysis of “terroir” cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors Francoise Irlinger,Mahendra Mariadassou,Eric Dugat-Bony,Olivier Rué,Cécile Neuvégliseet al. ISME Communications, 2024, 4 (1), pp.ycae095. ⟨10.1093/ismeco/ycae095⟩ Article dans une revue hal-04668230v1
Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data. Cédric Midoux,Olivier Rué,Olivier Chapleur,Ariane Bize,Valentin Louxet al. Journal of Open Source Software, 2024, 9 (103), pp.6704. ⟨10.21105/joss.06704⟩ Article dans une revue hal-04785149v1
Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy Maxence Jollet,Mahendra Mariadassou,Olivier Rué,Laurence Pessemesse,Vincent Ollendorffet al. American Journal of Pathology, 2024, 194 (2), pp.264-279. ⟨10.1016/j.ajpath.2023.10.010⟩ Article dans une revue hal-04383411v1
Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd Mahendra Mariadassou,Laurent-Xavier Nouvel,Fabienne Constant,Diego P. Morgavi,Lucie Raultet al. Animal Microbiome, 2023, 5 (1), pp.32. ⟨10.1186/s42523-023-00252-w⟩ Article dans une revue hal-04126196v1
Prebiotic Supplementation During Gestation Induces a Tolerogenic Environment and a Protective Microbiota in Offspring Mitigating Food Allergy Amandine Selle,Carole Brosseau,Wieneke Dijk,Angéline Duval,Gregory Bouchaudet al. Frontiers in Immunology, 2022, 12, pp.745535. ⟨10.3389/fimmu.2021.745535⟩ Article dans une revue hal-03578742v1
Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs Semi Zouiouich,Mahendra Mariadassou,Olivier Rué,Emily Vogtmann,Inge Huybrechtset al. Cancer Epidemiology, Biomarkers and Prevention, 2022, 31 (2), pp. 305-314. ⟨10.1158/1055-9965.EPI-21-0188⟩ Article dans une revue hal-03625845v1
Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process Antoine Bichat,Christophe Ambroise,Mahendra Mariadassou Computational Statistics, 2022, 37 (3), pp.995-1013. ⟨10.1007/s00180-021-01148-6⟩ Article dans une revue hal-04072108v1
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Daniel Richter,Romain Watteaux,Thomas Vannier,Jade Leconte,Paul Frémontet al. eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩ Article dans une revue hal-02399723v2
Nitric Oxide Impacts Human Gut Microbiota Diversity and Functionalities Marion Leclerc,Cassandre Bedu-Ferrari,Lucie Etienne-Mesmin,Mahendra Mariadassou,Lucie Lebreuillyet al. mSystems, 2021, 6 (5), ⟨10.1128/mSystems.00558-21⟩ Article dans une revue hal-03413913v1
Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model Maxence Jollet,Kevin Nay,Angèle Chopard,Marie-Pierre Bareille,Arnaud Becket al. Nutrients, 2021, 13 (11), ⟨10.3390/nu13113865⟩ Article dans une revue hal-03415988v1
The Poisson-Lognormal Model as a Versatile Framework for the Joint Analysis of Species Abundances Julien Chiquet,Mahendra Mariadassou,Stéphane Robin Frontiers in Ecology and Evolution, 2021, 9, ⟨10.3389/fevo.2021.588292⟩ Article dans une revue hal-03215628v1
FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers Maria Bernard,Olivier Rué,Mahendra Mariadassou,Géraldine Pascal Briefings in Bioinformatics, 2021, 22 (6), ⟨10.1093/bib/bbab318⟩ Article dans une revue hal-03323846v1
Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions Franciele Pereira Camargo,Isabel Kimiko Sakamoto,Tiago Palladino Delforno,Mahendra Mariadassou,Valentin Louxet al. Journal of Environmental Management, 2021, 291, pp.112631. ⟨10.1016/j.jenvman.2021.112631⟩ Article dans une revue hal-03211333v1
Glucose but Not Fructose Alters the Intestinal Paracellular Permeability in Association With Gut Inflammation and Dysbiosis in Mice Magali Monnoye,Xufei Zhang,Mahendra Mariadassou,Fabienne Beguet-Crespel,Nicolas Lapaqueet al. Frontiers in Immunology, 2021, 12, ⟨10.3389/fimmu.2021.742584⟩ Article dans une revue hal-03634400v1
The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network Malik Aydin,Cornelius Weisser,Olivier Rué,Mahendra Mariadassou,Sandra Maaßet al. Frontiers in Allergy, 2021, 2, ⟨10.3389/falgy.2021.667562⟩ Article dans une revue hal-03244864v1
Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions E. Lejal,J. Chiquet,J. Aubert,S. Robin,A. Estrada-Peñaet al. Microbiome, 2021, 9 (1), pp.153. ⟨10.1186/s40168-021-01051-8⟩ Article dans une revue hal-03287263v1
Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history Ariane Bize,Cédric Midoux,Mahendra Mariadassou,Sophie Schbath,Patrick Forterreet al. BMC Genomics, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩ Article dans une revue hal-03176011v1
Unraveling the history of the genus Gallus through whole genome sequencing Mahendra Mariadassou,Marie Suez,Sanbadam Sathyakumar,Alain Vignal,Mariangela Arcaet al. Molecular Phylogenetics and Evolution, 2021, 158, pp.107044. ⟨10.1016/j.ympev.2020.107044⟩ Article dans une revue hal-03155990v1
Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis Emilie Lejal,Agustin Estrada-Peña,Maud Marsot,Jean-Francois J.-F. Cosson,Olivier Ruéet al. Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01093⟩ Article dans une revue hal-02790980v1
Consistency and asymptotic normality of stochastic block models estimators from sampled data Mahendra Mariadassou,Timothée Tabouy Electronic Journal of Statistics , 2020, 14 (2), pp.3672-3704. ⟨10.1214/20-ejs1750⟩ Article dans une revue hal-04380551v1
SimkaMin: fast and resource frugal de novo comparative metagenomics Gaëtan Benoit,Mahendra Mariadassou,Stéphane Robin,Sophie Schbath,Pierre Peterlongoet al. Bioinformatics, 2020, 36 (4), pp.1-2. ⟨10.1093/bioinformatics/btz685⟩ Article dans une revue hal-02308101v1
Detection of selection signatures in Limousin cattle using whole‐genome resequencing M. Mariadassou,Y. Ramayo‐caldas,M. Charles,M. Féménia,G. Renandet al. Animal Genetics, 2020, 51 (5), pp.815-819. ⟨10.1111/age.12982⟩ Article dans une revue hal-03285327v1
First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice Laurent Naudon,Adrien François,Mahendra Mariadassou,Magali Monnoye,Catherine Philippeet al. Behavioural Brain Research, 2020, 384, ⟨10.1016/j.bbr.2020.112549⟩ Article dans une revue hal-02503302v1
Murine genetic background overcomes gut microbiota changes to explain metabolic response to high-fat diet Zahra Safari,Aurelia Bruneau,Magali Monnoye,Mahendra Mariadassou,Catherine Philippeet al. Nutrients, 2020, 12 (2), ⟨10.3390/nu12020287⟩ Article dans une revue hal-02503303v1
Consistency and Asymptotic Normality of Latent Blocks Model Estimators Vincent Brault,Christine Keribin,Mahendra Mariadassou Electronic Journal of Statistics , 2020, 14 (1), pp.1234-1268. ⟨10.1214/20-EJS1695⟩ Article dans une revue hal-01511960v3
Shifts in the temperature-sensitive periods for spring phenology in European beech and pedunculate oak clones across latitudes and over recent decades. Bénédicte Wenden,Mahendra Mariadassou,Frank-M Chmielewski,Yann Vitasse Global Change Biology, 2020, 26, pp.1808-1819. ⟨10.1111/gcb.14918⟩ Article dans une revue hal-02622770v1
Incorporating Phylogenetic Information in Microbiome Differential Abundance Studies Has No Effect on Detection Power and FDR Control Antoine Bichat,Jonathan Plassais,Christophe Ambroise,Mahendra Mariadassou Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.00649⟩ Article dans une revue hal-02635268v1
A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats Valérie Daugé,Catherine Philippe,Mahendra Mariadassou,Olivier Rué,Jean-Charles Martinet al. Frontiers in Behavioral Neuroscience, 2020, 14, ⟨10.3389/fnbeh.2020.581296⟩ Article dans une revue hal-03225018v1
Function-Driven Design of Lactic Acid Bacteria Co-cultures to Produce New Fermented Food Associating Milk and Lupin Fanny Canon,Mahendra Mariadassou,Marie-Bernadette Maillard,Hélène Falentin,Sandrine Parayreet al. Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.584163⟩ Article dans une revue hal-03019865v1
Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism Xufei Zhang,Alexandra Grosfeld,Edek Williams,Daniel Vasiliauskas,Sharon Barrettoet al. FASEB Journal, 2019, 33 (6), pp.7126-7142. ⟨10.1096/fj.201801526RR⟩ Article dans une revue hal-02191008v1
Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater Tiago P. Delforno,Thais Z. Macedo,Cedric Midoux,Gileno V. Lacerda,Olivier Ruéet al. Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩ Article dans une revue hal-01888286v1
Optimize the plant microbiota to increase plant growth and health Matthieu Barret,P. Dufour,Mylène Durand-Tardif,Mahendra Mariadassou,Christophe Mougelet al. Consortium Biocontrôle et GIS Biotechnologies Vertes , 2019, ⟨10.15454/1fve-e105⟩ Article dans une revue hal-03297096v1
Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale Méryl Vila Nova,Kévin Durimel,Kévin La,Arnaud Felten,Philippe Bessiereset al. BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6188-x⟩ Article dans une revue hal-02392205v1
Gut bacteria are critical for optimal muscle functiona potential link with glucose homeostasis Kevin Nay,Maxence Jollet,Benedicte Goustard,Narjes Baati,Barbara Vernuset al. AJP - Endocrinology and Metabolism, 2019, 317 (1), pp.E158-E171. ⟨10.1152/ajpendo.00521.2018⟩ Article dans une revue hal-02152871v1
Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding Hélène Falentin,Lucas Auer,Mahendra Mariadassou,Géraldine Pascal,Olivier Ruéet al. Cahier des Techniques de l'INRA, 2019, 97, pp.46-69 Article dans une revue (article de synthèse) hal-02311421v1
Steatosis and gut microbiota dysbiosis induced by high-fat diet are reversed by 1-week chow diet administration Zahra Safari,Magali Monnoye,Peter M. Abuja,Mahendra Mariadassou,Karl Kashoferet al. Nutrients, 2019, 71, pp.72-88. ⟨10.1016/j.nutres.2019.09.004⟩ Article dans une revue hal-02503316v1
Inference of Adaptive Shifts for Multivariate Correlated Traits Paul Bastide,Céline Ané,Stephane Robin,Mahendra Mariadassou Systematic Biology, 2018, 67, ⟨10.1093/sysbio/syy005⟩ Article dans une revue hal-01608932v1
FROGS: Find, Rapidly, OTUs with Galaxy Solution Frédéric Escudié,Lucas Auer,Maria Bernard,Mahendra Mariadassou,Laurent Cauquilet al. Bioinformatics, 2018, 34 (8), pp.1287-1294. ⟨10.1093/bioinformatics/btx791⟩ Article dans une revue hal-02626808v1
Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes Jeffrey K. Cornuault,Marie-Agnès Petit,Mahendra Mariadassou,Leandro Benevides,Elisabeth Moncautet al. Microbiome, 2018, 6 (1), 14 p. ⟨10.1186/s40168-018-0452-1⟩ Article dans une revue hal-01774632v1
Variational inference for probabilistic Poisson PCA Julien Chiquet,Mahendra Mariadassou,Stephane Robin Annals of Applied Statistics, 2018, 12 (4), pp.2674-2698. ⟨10.1214/18-AOAS1177⟩ Article dans une revue hal-01941270v1
Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue Hela El Kafsi,Valentin Loux,Mahendra Mariadassou,Camille Blin,Hélène Chiapelloet al. Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩ Article dans une revue hal-01509688v1
Analysis of large 16S rRNA Illumina datasets: impact of singleton read filtering on microbial community description Lucas Auer,Mahendra Mariadassou,Michael O'Donohue,Christophe Klopp,Guillermina Hernandez-Raquet Molecular Ecology Resources, 2017, ⟨10.1111/1755-0998.12700⟩ Article dans une revue (data paper) hal-01605865v1
Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study Stéphanie-Marie Deutsch,Mahendra Mariadassou,Pierre Nicolas,Sandrine Parayre,Rozenn Le Guellecet al. Scientific Reports, 2017, 7, pp.46409. ⟨10.1038/srep46409⟩ Article dans une revue hal-01510019v1
OH1 from Orf virus: a new tyrosine phosphatase that displays distinct structural features and triple substrate specificity Danilo Segovia,Ahmed Haouz,Dario Porley,Natalia Olivero,Mariano Martinezet al. Journal of Molecular Biology, 2017, 26 p. ⟨10.1016/j.jmb.2017.07.017⟩ Article dans une revue hal-01602647v1
Detection of adaptive shifts on phylogenies by using shifted stochastic processes on a tree Paul Bastide,Mahendra Mariadassou,Stephane Robin Journal of the Royal Statistical Society: Series B, 2017, ⟨10.1111/rssb.12206⟩ Article dans une revue hal-01551071v1
Multiple comparative metagenomics using multiset k -mer counting Gaëtan Benoit,Pierre Peterlongo,Mahendra Mariadassou,Erwan Drezen,Sophie Schbathet al. PeerJ Computer Science, 2016, 2 (14), 25 p. ⟨10.7717/peerj-cs.94⟩ Article dans une revue hal-01397150v1
Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota Jeanne Alard,Véronique Lehrter,Moez Rhimi,Irène Mangin,Véronique Peucelleet al. Environmental Microbiology, 2016, 18 (5), pp.1484-1497. ⟨10.1111/1462-2920.13181⟩ Article dans une revue istex hal-03372071v1
The Red Queen lives: Epistasis between linked resistance loci Cesar M. J. A. Metzger,Pepijn Luijckx,Gilberto Bento,Mahendra Mariadassou,Dieter Ebert Evolution - International Journal of Organic Evolution, 2016, 70 (2), pp.480-487. ⟨10.1111/evo.12854⟩ Article dans une revue istex hal-02631286v1
Olfactory epithelium changes in germfree mice Adrien François,Denise Grebert,Moez Rhimi,Mahendra Mariadassou,Laurent Naudonet al. Scientific Reports, 2016, 6 (1), pp.24687. ⟨10.1038/srep24687⟩ Article dans une revue hal-03371054v1
Co-clustering through Latent Bloc Model: a Review Vincent Brault,Mahendra Mariadassou Journal de la Société Française de Statistique, 2015, 156 (3), pp.120-139 Article dans une revue hal-02088216v1
High genetic variation in resting-stage production in a metapopulation: is there evidence for local adaptation? Anne C Roulin,Mahendra Mariadassou,Matthew D Hall,Jean-Claude Walser,Christoph R. Haaget al. Evolution - International Journal of Organic Evolution, 2015, 69 (10), pp.2747-2756. ⟨10.1111/evo.12770⟩ Article dans une revue istex hal-02634111v1
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii Valentin Loux,Mahendra Mariadassou,Sintia Almeida,Hélène Chiapello,Amal Hammaniet al. BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩ Article dans une revue hal-01142363v1
Convergence of the groups posterior distribution in latent or stochastic block models Mahendra Mariadassou,Catherine Matias Bernoulli, 2015, 21 (1), pp.537-573 Article dans une revue hal-00713120v2
Microbial ecosystems are dominated by specialist taxa. Mahendra Mariadassou,Samuel Pichon,Dieter Ebert Ecology Letters, 2015, 18 (9), pp.974-82. ⟨10.1111/ele.12478⟩ Article dans une revue istex hal-02631330v1
Quantitative prediction of genome-wide resource allocation in bacteria Anne Goelzer,Jan Muntel,Victor Chubukov,Matthieu Jules,Eric Prestelet al. Metabolic Engineering, 2015, 32, pp.232-243. ⟨10.1016/j.ymben.2015.10.003⟩ Article dans une revue hal-01536511v1
Identification of amino acids in mitochondrially encoded proteins that correlate with lifespan. Mahendra Mariadassou,Francois-Xavier Pellay Experimental Gerontology, 2014, 56, pp.53-58. ⟨10.1016/j.exger.2014.03.009⟩ Article dans une revue hal-02630250v1
Local and systemic Immune mechanisms underlying the Anti-Colitis effects of the dairy Bacterium Lactobacillus delbrueckii. Clarissa Santos Rocha,Ana Cristina Gomes-Santos,Thais Garcias Moreira,Marcela de Azevedo,Tessalia Diniz Luerceet al. PLoS ONE, 2014, 9 (1), pp.1-8. ⟨10.1371/journal.pone.0085923⟩ Article dans une revue hal-01204288v1
Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods. Jean-François Gibrat,Mahendra Mariadassou,Pierre Boudinot,Bernard B. Delmas BMC Evolutionary Biology, 2013, 13, pp.3-17. ⟨10.1186/1471-2148-13-154⟩ Article dans une revue hal-02645508v1
Taxon influence index: assessing taxon-induced incongruities in phylogenetic inference Mahendra Mariadassou,Avner Bar-Hen,Hirohisa Kishino Systematic Biology, 2012, 61 (2), pp.337-345. ⟨10.1093/sysbio/syr129⟩ Article dans une revue hal-02642639v1
Phylogenetic and complementation analysis of a single-stranded dna binding protein family from lactococcal phages indicates a non-bacterial origin Agnieszka K. Szczepankowska,Eric Prestel,Mahendra Mariadassou,Jacek K. Bardowski,Elena Bidnenko PLoS ONE, 2011, 6 (11), ⟨10.1371/journal.pone.0026942⟩ Article dans une revue hal-01191212v1
Uncovering latent structure in valued graphs: a variational approach Mahendra Mariadassou,Stephane Robin,Corinne Vacher Annals of Applied Statistics, 2010, 4 (2), pp.715-742. ⟨10.1214/10-AOAS361⟩ Article dans une revue hal-01197514v1
Concentration inequality for evolutionary trees Mahendra Mariadassou,Avner Bar-Hen Journal of Multivariate Analysis, 2009, pp.2055-2064. ⟨10.1016/j.jmva.2009.02.015⟩ Article dans une revue istex hal-00410872v1
Influence function for robust phylogenetic reconstructions. Avner Bar-Hen,Mahendra Mariadassou,Marie-Anne Poursat,Philippe Vandenkoornhuyse Molecular Biology and Evolution, 2008, 25 (5), pp.869-873. ⟨10.1093/molbev/msn030⟩ Article dans une revue hal-00312860v1
Uncovering structure in biological networks J.J. Daudin,Vincent Lacroix,M. Mariadassou,V. Miele,Franck Picardet al. incollection, 2006, --, pp.471-483 Article dans une revue hal-00427936v1

Communication dans un congrès (38)

Rétrospective FROGS 2015–2025 Géraldine Pascal,Maria Bernard,Olivier Rué,Mahendra Mariadassou,Frédéric Escudiéet al. Symposium FROGSDays, INRAE Toulouse, Dec 2025, Castanet Tolosan, France Communication dans un congrès hal-05492401v1
An advanced stochastic framework for the simulation of transgenerational hologenomic data Solène Pety,Ingrid David,Mahendra Mariadassou,Andrea Rau JOBIM, Jul 2025, Bordeaux (FR), France Communication dans un congrès hal-05344529v1
Zero-inflation in the MPLN Family Bastien Batardière,Julien Chiquet,François Gindraud,Mahendra Mariadassou 55èmes journées de la statistique, May 2024, Bordeaux, France Communication dans un congrès hal-04738587v1
Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data Cédric Midoux,Mahendra Mariadassou Rencontres R, Société Française de Statistique, Jun 2024, Vannes, France Communication dans un congrès hal-04611225v1
Drivers of microbial diversity in French Protected designation of Origin (PDO) cheeses Francoise Irlinger,Mahendra Mariadassou,Eric Dugat-Bony,Cécile Neuvéglise,Olivier Ruéet al. IDF World Dairy Science, Oct 2024, Paris, France Communication dans un congrès hal-04820075v1
Milk microbiota: potential allies for mammary gland health Coralie Goetz,Lucie Rault,Marion Boutinaud,Christine Citti,Hélène Falentinet al. ADSA annual meeting 2023, American Dairy Science Association, Jun 2023, Ottawa, Canada. pp.146 Communication dans un congrès hal-04164763v1
Addition of dairy lipids and probiotic in infant formulas modulates gut microbiota and intestinal physiology with long-term consequences; a preclinical study in a minipig model Marion Lemaire,Mahendra Mariadassou,Laurence Le Normand,Gwenaelle Randuineau,Véronique Romeet al. 15. Congress of the international society for the study of fatty acids and lipids (ISSFAL), Jul 2023, Nantes, France Communication dans un congrès hal-04155652v1
MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheeses Francoise Irlinger,Mahendra Mariadassou,Eric Dugat-Bony,Cécile Neuvéglise,Olivier Ruéet al. FORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France Communication dans un congrès hal-04221356v1
Origins and rate of mutations in bacteriophage Lambda Julien Lopez,Mahendra Mariadassou,Valentin Loux,Rafael Sanjuán,Marina Elezet al. Phages in Lyon 2023, phages.fr, Nov 2023, Lyon, France Communication dans un congrès hal-04321371v1
Microbial transfers at the crossroads of agro-ecological transitions in dairy systems Nicolas Chemidlin Prévost-Bouré,Anne-Laure Abraham,Annick Bernalier Donadille,Juliette Bloor,Matthieu Bouchonet al. Carrefours de l’innovation agronomique (CIAG) Les indicateurs de qualité des sols et leur usage dans un contexte de transitions agricoles, Nov 2022, Orléans, France Communication dans un congrès hal-04826247v1
Nitric Oxide impacts human gut microbiota diversity and functionalities Nalini Ramarao,Cassandre Bedu-Ferrari,Lucie Etienne-Mesmin,Mahendra Mariadassou,Lucie Lebreuillyet al. 9. Microbiome and probiotics R & D and business collaboration, Oct 2021, Rotterdam, Netherlands Communication dans un congrès hal-03739679v1
Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis Benoit Goutorbe,Anne-Laure Abraham,Mahendra Mariadassou,Anne Plauzolles,Ghislain Bidautet al. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France Communication dans un congrès hal-03451266v1
Shifts in the temperature sensitivity periods for two forest tree species under warming climatic conditions Bénédicte Wenden,Mahendra Mariadassou,Frank-M Chmielewski,Yann Vitasse EGU General Assembly 2019, Apr 2019, Vienna, Austria Communication dans un congrès hal-02790841v1
Is skeletal muscle remodeling associated with gut microbiota signature? Maxence Jollet,Barbara Vernus,Anne Bonnieu,Mahendra Mariadassou,Olivier Ruéet al. 6th World Congress on Targeting Microbiota, Oct 2018, Porto, Portugal. pp.1 Communication dans un congrès hal-02736948v1
Caractérisation et modélisation des populations de bactériophages de la croûte de fromages (type époisses) sous différentes conditions environnementales d’affinage Stephane Chaillou,Eric Dugat-Bony,Julien Lossouarn,Marie-Agnès Petit,Mahendra Mariadassouet al. 15. Congrès de la Société Française de Microbiologie (SFM), Société Française de Microbiologie (SFM). FRA., Sep 2019, Paris, France Communication dans un congrès hal-02789388v1
Membre du comité d'organisation scientifique Danielle Canceill,Virginie Bourion,Mahendra Mariadassou,Milka Popova,C Roger-Gaillard,et al. Séminaire de lancement du métaprogramme HOLOFLUX, Nov 2019, Nantes, France Communication dans un congrès hal-03229623v1
Ecological modelling of phage, bacterial and yeast populations structure in Epoisses cheese under changing ripening conditions using factorial experimental design and metavirome analysis Eric Dugat-Bony,Julien Lossouarn,Mahendra Mariadassou,Daniel Picque,Marie-Agnès Petitet al. MD 2019 : 5th International Conference on Microbial Diversity, Sep 2019, Catania, Italy Communication dans un congrès hal-04416628v1
Variational Inference for sparse network reconstruction from count data Julien Chiquet,Mahendra Mariadassou,Stephane Robin ICML 2019 International Conference on Machine Learning, Jun 2019, Long Beach, United States Communication dans un congrès hal-02735800v1
A Walk Along Models for Count Data in Microbial Ecology Mahendra Mariadassou,Julien Chiquet,Stéphane Robin Recent Computational Advances in Metagenomics (RCAM) 2018, Sep 2018, Athènes, Greece Communication dans un congrès hal-04382269v1
A metagenomic tool for cheese ecosystems Anne-Laure Abraham,Quentin Cavaillé,Thibaut Guirimand,Pierre Renault,Sandra Derozieret al. 17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athenes, Greece Communication dans un congrès hal-02789036v1
Statistical analysis of trends in sweet cherry flowering data across Europe Bénédicte Wenden,Mahendra Mariadassou,José Antonio Campoy,José Quero-Garcia,Elisabeth Dirlewanger 10. International Symposium on Modelling in Fruit Research and Orchard Management, 2017, Leuven, Belgium. ⟨10.17660/ActaHortic.2017.1160.31⟩ Communication dans un congrès hal-02737108v1
Équivalence asymptotique des vraisemblances observée et complète dans le modèle de blocs latents Vincent Brault,Christine Keribin,Mahendra Mariadassou XXIV èmes Rencontres de la Société Francophone de Classification, Société Francophone de Classification, Jun 2017, Lyon, France Communication dans un congrès hal-01510994v1
Genomics of Chicken Domestication Mahendra Mariadassou,Marie Suez,Pierre Nicolas,Diane Esquerré,Alain Vignalet al. 10. European Symposium on Poultry Genetics, Jun 2017, Saint Malo, France Communication dans un congrès hal-02785437v1
FORTRESS : Impact of microbial diversity on the barrier effect against an exogenous species Eric Dugat-Bony,Philippine de Barbeyrac,Mahendra Mariadassou,Cecile Callon,Pascal Bonnarmeet al. 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France Communication dans un congrès hal-01608159v1
Sweet cherry phenology in the context of climate change: a systems biology approach Bénédicte Wenden,Mahendra Mariadassou COST Cherry FA1104 Working Group 2 Cherry Phenology, Modelling and Climate Change, International Society for Horticultural Science (ISHS). INT., 2017, Ullensvang, Norway. ⟨10.17660/ActaHortic.2017.1162.6⟩ Communication dans un congrès hal-02736013v1
Food-Microbiomes Transfert, a shotgun metagenomic tool and a database to analyze cheese ecosystems Thibaut Guirimand,Anne-Laure Abraham,Sandra Derozier,Charlie Pauvert,Mahendra Mariadassouet al. JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France Communication dans un congrès hal-02788899v1
Normalité asymptotique de l’estimateur du maximum de vraisemblance dans le modèle de blocs latents Mahendra Mariadassou,Vincent Brault,Christine Keribin 48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France Communication dans un congrès hal-01440084v1
Quantitative prediction of genome-wide resource allocation in bacteria Anne Goelzer,Jan Muntel,Victor Chubukov,Matthieu Jules,Eric Prestelet al. ISGSB 2016: International Study Group for Systems Biology, Oct 2016, Jena, Germany Communication dans un congrès hal-02798691v1
Flowering time response to temperature in sweet cherry across Europe: multi-cultivar and multi-environment analysis Bénédicte B. Wenden,Mahendra Mariadassou,José Antonio Campoy,José Quero-Garcia,Elisabeth Dirlewanger 8. International Rosaceae Genomics Conference (RGC8), Jun 2016, Angers, France Communication dans un congrès hal-02740156v1
Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystems Marianne de Paepe,Eric Dugat-Bony,Jérôme Hamelin,Mahendra Mariadassou,Kim Milferstedtet al. Phages On Marseille, Nov 2016, Marseille, France. pp.1 Communication dans un congrès hal-01531724v1
Find Rapidly OTU with Galaxy Solution Frédéric Escudie,Lucas Auer,Maria Bernard,Laurent Cauquil,Katia Vidalet al. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France Communication dans un congrès hal-01535378v1
Statistical analysis of trends in Sweet Cherry flowering data across Europe Bénédicte B. Wenden,Mahendra Mariadassou,José Antonio Campoy,José Quero-Garcia,Elisabeth Dirlewanger 10. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France Communication dans un congrès hal-02793616v1
Analyse statistique de données multisites de floraison pour le cerisier doux Bénédicte B. Wenden,Mahendra Mariadassou,José Antonio Campoy,José Quero-Garcia,Elisabeth Dirlewanger Colloque Francophone Phénologie, Nov 2015, Clermont Ferrand, France Communication dans un congrès hal-02744122v1
Dominant Species are Specialists Mahendra Mariadassou ECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gôteborg, Sweden. pp.1 Communication dans un congrès hal-02793165v1
The specificity - abundance relationship in microbial communities Mahendra Mariadassou,Dieter Ebert,Samuel Pichon ECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gothenburg, Sweden. pp.1 Communication dans un congrès hal-02798419v1
Uncovering latent structure in valued graphs: a variational approach Mahendra Mariadassou,Stephane S. Robin,Corinne C. Vacher Probability and Discrete Mathematics in Mathematical Biology, May 2011, Singapore, Singapore. 47 diapos Communication dans un congrès hal-02802815v1
Influence function for robust phylogenetic reconstruction Mahendra Mariadassou,Avner A. Bar-Hen JOBIM 2011, Jun 2011, Paris, France. pp.422 Communication dans un congrès hal-02746361v1
Fonction d'influence pour la reconstruction de phylogénies robustes Mahendra Mariadassou,Avner Bar-Hen 42èmes Journées de Statistique, 2010, Marseille, France. pp.USB-key Communication dans un congrès inria-00494834v1

Poster de conférence (37)

Microbial transfers in dairy systems under changing climate and farming practices Sébastien Theil,Mahendra Mariadassou,Philippe Ruiz,Guillaume Kon Kam King,Matthieu Bouchonet al. JOBIM 20025, Jul 2025, Bordeaux, France Poster de conférence hal-05168268v1
Microbial transfers in dairy systems under changing climate and farming practices Sébastien Theil,Mahendra Mariadassou,Philippe Ruiz,Guillaume Kon Kam King,Matthieu Bouchonet al. FROGS Days, Dec 2025, Toulouse, France Poster de conférence hal-05462857v1
Deciphering and cataloging the genomic and functional diversity of the French cheese microbiota Hélène Gardon,Françoise Irlinger,Céline Delbès,Éric Dugat-Bony,Julia Gendreet al. WDS 2024, Oct 2024, Paris, France Poster de conférence hal-05288574v1
Microbial transfers across a food chain: from grassland to cheese using metagenetic high-throughput sequencing approaches Anne-Laure Abraham,Juliette Bloor,Céline Delbès,Annick Bernalier Donadille,Matthieu Bouchonet al. FORUM ON FERMENTED FOODS, May 2023, Lyon, France Poster de conférence hal-04221437v1
Exploration of dairy cow holobiont revealed an important sharing of microbes between anatomic sites within individual hosts throughout lactation but sharing was limited in the herd Mahendra Mariadassou,Laurent-Xavier Nouvel,Fabienne Constant,Diego Morgavi,Lucie Raultet al. https://www.adsa.org/Meetings/2023-Annual-Meeting. ADSA annual meeting 2023, Jun 2023, Ottawa, Canada. , 2023 Poster de conférence hal-04164713v1
Combining marker genes in amplicon sequencing: a novel approach enhancing taxonomic profiling of microbial ecosystems Benoît Goutorbe,Anne-Laure Abraham,Mahendra Mariadassou,Marion Bonnet,Anne Plauzolleset al. 3rd International Conference on Holobionts, Jul 2022, Lyon, France. 2022 Poster de conférence hal-04176902v1
Rôle du microbiote dans la relation entre activité physique, santé et bien-être Benedicte Goustard,Barbara Vernus,Olivier Rué,Mahendra Mariadassou,Laurence Pessemesseet al. Journées d'Animation Scientifiques du Département PHASE, May 2022, Poitiers, France. 317, pp.E158 - E171 Poster de conférence hal-04804882v1
Plateforme bioinformatique MIGALE Mouhamadou Ba,Hélène Chiapello,Christelle Hennequet-Antier,Valentin Loux,Mahendra Mariadassouet al. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022 Poster de conférence hal-04176761v1
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics Vuong Quoc Hoang Ngo,François Enault,Cédric Midoux,Mahendra Mariadassou,Olivier Chapleuret al. ISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland. Poster de conférence hal-04359643v1
Plateforme bioinformatique MIGALE Mouhamadou Ba,Hélène Chiapello,Christelle Hennequet-Antier,Valentin Loux,Mahendra Mariadassouet al. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021 Poster de conférence hal-04176768v1
A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processes Vuong Quoc Hoang Ngo,Cédric Midoux,Mahendra Mariadassou,Valentin Loux,François Enaultet al. JOBIM 2021 (JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2021, Paris, France. Poster de conférence hal-04359920v1
Gut microbiota and skeletal muscle crosstalk : lessons from muscle remarkable phenotypes. Maxence Jollet,Kévin Nay,Mahendra Mariadassou,Olivier Rué,A Chopardet al. 19. Congress of Association of Researchers in Physical and Sport Activities ACAPS, Nov 2021, Montpellier, France Poster de conférence hal-04829963v1
New insights into cow holobiont in relation to heath Sergine Even,Mahendra Mariadassou,Xavier Nouvel,Fabienne F. Constant,Diego Morgaviet al. 16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France Poster de conférence hal-03361039v1
Plateforme bioinformatique MIGALE Mouhamadou Ba,Damien Berry,David Christiany,Hélène Chiapello,Olivier Inizanet al. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020 Poster de conférence hal-04176782v1
New insights into cow holobiont in relation to health Mahendra Mariadassou,Laurent-Xavier Nouvel,Diego Morgavi,Lucie Rault,Sophie Schbathet al. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. , 2020 Poster de conférence hal-02962468v1
Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ? Benoit Goutorbe,Anne-Laure Abraham,Mahendra Mariadassou,Valentin Loux,Olivier Ruéet al. JOBIM, Jun 2020, Montpellier, France. Poster de conférence hal-03451271v1
A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste Cedric Midoux,Franciele Camargo,Olivier Rué,Mahendra Mariadassou,Valentin Louxet al. JOBIM, Jun 2020, Montpellier, France Poster de conférence hal-02902758v1
Feedback on a c omparative metatranscriptomic analysis Cedric Midoux,Tiago P. Delforno,Thais Z. Macedo,Gileno V. Lacerda,Olivier Ruéet al. JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019 Poster de conférence hal-02735859v1
Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data Cédric Midoux,Guillaume Perréal,Manon Prédhumeau,Olivier Rué,Yannick Fayolleet al. AD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands Poster de conférence hal-04361137v1
Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes Vuong Quoc Hoang Ngo,Cédric Midoux,Olivier Rué,Mahendra Mariadassou,Violette Da Cunhaet al. Phages in Grenoble, Oct 2019, Grenoble, France. Poster de conférence hal-04360160v1
Plateforme bioinformatique MIGALE Hélène Chiapello,Sandra Dérozier,Olivier Inizan,Mahendra Mariadassou,Véronique Martinet al. Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019 Poster de conférence hal-04176805v1
Design de communautés bactériennes pour fermenter un nouvel aliment associant lait et légumineuse Valérie Gagnaire,Fanny Canon,Mahendra Mariadassou,Hélène Falentin,Sandrine Parayreet al. RFL2, 2e Rencontres Francophones sur les Légumineuses, Oct 2018, Toulouse, France. , 2018 Poster de conférence hal-01902837v1
Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data Cedric Midoux,Olivier Rué,Olivier Chapleur,Mahendra Mariadassou,Théodore Bouchezet al. JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018 Poster de conférence hal-02737257v1
New insights into cow holobiont in relation to health Laurent-Xavier Nouvel,Diego Morgavi,Lucie Rault,Mahendra Mariadassou,Sophie Schbathet al. Pathobiome 2018 "Pathogens in Microbiotas in Hosts", Jan 2018, Ajaccio, France Poster de conférence hal-03299131v1
Comparison of statistical methods of inference of cooccurrence networks within micro- bial ecosystems from metagenomics data Sophie Schbath,Mahendra Mariadassou,Julie Lao JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 Poster de conférence hal-01563604v1
Simka: large scale de novo comparative metagenomics Gaëtan Benoit,Pierre Peterlongo,Mahendra Mariadassou,Erwan Drezen,Sophie Schbathet al. JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 LILLE Poster de conférence hal-01595071v1
Design of bacterial consortia for fermentation of novel food mixing milk and lupin flour Fanny Canon,Mahendra Mariadassou,Hélène Falentin,Sandrine Parayre,Marie-Bernadette Maillardet al. 4. International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. 2017 Poster de conférence hal-01628088v1
Cheese ecosystems insights with shotgun metagenomics and a metadata extended genomics database. Thibaut Guirimand,Charlie Pauvert,Sandra Derozier,Anne-Laure Abraham,Mahendra Mariadassouet al. JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 2016 Poster de conférence hal-01512085v1
How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities? Lucas Auer,Laurent Cauquil,Stephane Chaillou,Céline Delbès,Eric Dugat-Bonyet al. JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015 Poster de conférence hal-01195512v1
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of &lt;i&gt;Propionibacterium freudenreichii&lt;/i&gt; Valentin Loux,Mahendra Mariadassou,Sintia Almeida da Silva,Helene Chiapello,Amal Hammamiet al. JOBIM 16. Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015, ⟨10.1186/s12864-015-1467-7⟩ Poster de conférence hal-01209851v1
FROGS : Find Rapidly OTUs with Galaxy Solution Frédéric Escudie,Lucas Auer,Maria Bernard,Laurent Cauquil,Katia Vidalet al. Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics Poster de conférence hal-01886389v1
Accurate taxonomy assignments in cheeses ecosystems via a metagenomic approach Charlie Pauvert,Anne-Laure Abraham,Mathieu Almeida,Nicolas Pons,Mahendra Mariadassouet al. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.1, 2015 Poster de conférence hal-01204484v1
Approche génomique de la domestication du poulet Michèle Tixier-Boichard,Mahendra Mariadassou,Xavier X Rognon,Pierre Nicolas,Francois Rodolpheet al. 11. Journées de la Recherches Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. , 2015, Onzièmes Journées de la Recherche Avicole et Palmipèdes à Foie Gras Poster de conférence hal-01535349v1
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii Valentin Loux,Mahendra Mariadassou,Sintia Almeida da Silva,Hélène Chiapello,Amal Hammamiet al. 20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. , 2015 Poster de conférence hal-01170054v1
Insight in the genetic diversity of wild and domestic [i]Gallus[/i] Mahendra Mariadassou,Bertrand Bed'Hom,Pierre Nicolas,Jean-Luc Coville,Félicie Lahalle-Fauconet al. 14. European Poultry Conference, Jun 2014, Stavanger, Norway. 2014 Poster de conférence hal-01193928v1
Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of Propionibacterium freudenreichii Caroline Le Maréchal,Mahendra Mariadassou,Valentin Loux,Amal Plaudet Hammani,Julien Burattiet al. Journées des Microbiologistes de l'INRA 2012, Nov 2012, L'Isle-sur-la-Sorgue, France. 2012 Poster de conférence hal-01209410v1
Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of[i] Propionibacterium freudenreichii[/i] Caroline Le Maréchal,Mahendra Mariadassou,Valentin Loux,Amal Plaudet Hammani,Julien Burattiet al. Journées ouvertes en biologie informatique mathématiques, Jul 2012, Rennes, France. , 2012 Poster de conférence hal-01209420v1

Chapitre d'ouvrage (3)

The Poisson Log-Normal Model: A Generic Framework for Analyzing Joint Abundance Distributions Julien Chiquet,Marie-Josée Cros,Mahendra Mariadassou,Nathalie Peyrard,Stéphane Robin Nathalie Peyrard; Olivier Gimenez. Statistical approaches for hidden variables in ecology, Wiley, 2022 Chapitre d'ouvrage hal-04688958v1
Le modèle Poisson log-normal pour l’analyse de distributions jointes d’abondance Julien Chiquet,Marie-Josée Cros,Mahendra Mariadassou,Nathalie Peyrard,Stéphane Robin Nathalie Peyrard; Olivier Gimenez. Approches statistiques pour les variables cachées en écologie, ISTE Éditions, 2022, 9781789480474 Chapitre d'ouvrage hal-04033421v1
Tree Evaluation and Robustness Testing Mahendra Mariadassou,Avner Bar-Hen,Hirohisa Kishino Encyclopedia of Bioinformatics and Computational Biology, 2, Elsevier, pp.736-745, 2019, ⟨10.1016/B978-0-12-809633-8.20259-8⟩ Chapitre d'ouvrage hal-02484863v1

Autre publication scientifique (1)

FROGS : Find Rapidly OTU with Galaxy Solution Frédéric Escudie,Lucas Auer,Maria Bernard,Mahendra Mariadassou,Laurent Cauquilet al. 2017 Autre publication scientifique hal-01886442v1

Pré-publication, Document de travail (7)

Atypical Replication Error Pattern and Limited Repair Efficiency Contribute to Elevated Mutation Rate in Phage lambda Julien Lopez,Magali Ventroux,Valentin Loux,Mahendra Mariadassou,François Lecointeet al. 2025 Pré-publication, Document de travail hal-05289701v1
NeighborFinder: an R package inferring local microbial network around a species of interest Mathilde Sola,Adrien Paravel,Sandrine Auger,Jean-Marc Chatel,Florian Plaza-Oñateet al. 2026 Pré-publication, Document de travail hal-05408767v2
Simulating transgenerational hologenomes under selection with RITHMS Solène Pety,Ingrid David,Andrea Rau,Mahendra Mariadassou 2026 Pré-publication, Document de travail hal-04913329v5
OneNet – One network to rule them all: consensus network inference from microbiome data Camille Champion,Raphaelle Momal,Emmanuelle Le Chatelier,Mahendra Mariadassou,Magali Berland 2024 Pré-publication, Document de travail hal-04381703v1
Characterizing the limits of shallow shotgun metagenomics for taxonomic profiling of human gut microbiota in clinical studies Benoit Goutorbe,Anne-Laure Abraham,Mahendra Mariadassou,Anne Plauzolles,Ghislain Bidautet al. 2022 Pré-publication, Document de travail hal-04316615v1
Multiple Comparative Metagenomics using Multiset k-mer Counting Gaëtan Benoit,Pierre Peterlongo,Mahendra Mariadassou,Erwan Drezen,Sophie Schbathet al. 2016 Pré-publication, Document de travail hal-01300485v1
Assessing the Distribution Consistency of Sequential Data Mahendra Mariadassou,Avner Bar-Hen 2009 Pré-publication, Document de travail hal-00391682v1

Rapport (2)

Variational inference for probabilistic Poisson PCA Julien Chiquet,Mahendra Mariadassou,Stephane Robin [University works] auto-saisine. 2017 Rapport hal-01608912v1
Équivalence asymptotique des vraisemblances observée et complète dans le modèle de blocs latents Vincent Brault,Christine Keribin,Mahendra Mariadassou [Travaux universitaires] auto-saisine. 2017 Rapport hal-01603137v1

Thèse (1)

Robustess of Phylogenetic Trees Mahendra Mariadassou Mathematics [math]. Université Paris Sud - Paris XI, 2009. English. ⟨NNT : ⟩ Thèse tel-00472052v1

Cours (2)

FROGS Training on Galaxy : Metagenomics November 2017 Frédéric Escudié,Lucas Auer,Maria Bernard,Laurent Cauquil,Sarah Mamanet al. Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p Cours hal-02791696v1
FROGS Training on Galaxy : Statistics to Explore Metagenomics Maria Bernard,Géraldine Pascal,Mahendra Mariadassou,Laurent Cauquil,Stephane Chaillou Training on Galaxy : Statistics to Explore Metagenomics - FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 116 p Cours hal-02788316v1

Mémoire d'étudiant (1)

Software engineering and genericity of a transgenerational hologonomic simulation framework, followed by an in silico analysis of thermal effects on the bovine holobiont Youna Maillié,Mahendra Mariadassou,Andrea Rau,Ingrid David,Solène Pety Statistics [stat]. 2025 Mémoire d'étudiant hal-05344476v1

Logiciel (2)

Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data Cédric Midoux,Olivier Rué,Olivier Chapleur,Ariane Bize,Valentin Louxet al. 2024, ⟨swh:1:rel:35d2caacc87474efa1f1e277f5eb13352962793d⟩ Logiciel hal-04304559v2
PLNmodels: Poisson lognormal models Julien Chiquet,Mahendra Mariadassou,Stephane S. Robin,François Gindraud 2019, ⟨swh:1:dir:cfa1e1e06bbff34b4203820ebe23d1a1b54e713f;origin=https://github.com/PLN-team/PLNmodels;visit=swh:1:snp:33650f3635758717aa9ed6d1c6150f6e00711181;anchor=swh:1:rev:afad5560c704d29ff5704df4993bb471bd971f6c⟩ Logiciel hal-04440660v1