Matthieu Montes

Identifiants chercheurs

IdHAL :

maitrezu

ORCID :

0000-0001-5921-460X

IdRef :

121837505

Publications

Article dans une revue (27)

VTX: Real-time high-performance molecular structure and dynamics visualization software Maxime Maria,Simon Guionnière,Nicolas Dacquay,Valentin Guillaume,Vincent Larroqueet al. Bioinformatics, 2025, pp.btaf295. ⟨10.1093/bioinformatics/btaf295⟩ Article dans une revue hal-04917948v1
Combining Molecular Docking and Pharmacophore Models Predicts Ligand Binding of Endocrine-Disrupting Chemicals to Nuclear Receptors Asma Sellami,Matthieu Montes,Nathalie Lagarde Chemical Research in Toxicology, 2025, 38 (4), ⟨10.1021/acs.chemrestox.4c00455⟩ Article dans une revue hal-05034696v1
SHREC 2025: Protein surface shape retrieval including electrostatic potential Taher Yacoub,Camille Depenveiller,Atsushi Tatsuma,Tin Barisin,Eugen Rusakovet al. Computers and Graphics, 2025, 132, pp.104394. ⟨10.1016/j.cag.2025.104394⟩ Article dans une revue hal-05263222v1
Interactive visualization of large molecular systems with VTX: example with a minimal whole-cell model Maxime Maria,Valentin Guillaume,Simon Guionnière,Nicolas Dacquay,Vincent Larroqueet al. Frontiers in Bioinformatics, 2025, 5, pp.1588661. ⟨10.3389/fbinf.2025.1588661⟩ Article dans une revue hal-04986917v1
PLO3S: Protein LOcal Surficial Similarity Screening Léa Sirugue,Florent Langenfeld,Nathalie Lagarde,Matthieu Montes Computational and Structural Biotechnology Journal, 2024, 26, pp.1 - 10. ⟨10.1016/j.csbj.2023.12.002⟩ Article dans une revue hal-05133344v1
Efficient GPU computation of large protein Solvent-Excluded Surface Cyprien Plateau-Holleville,Maxime Maria,Stéphane Mérillou,Matthieu Montes IEEE Transactions on Visualization and Computer Graphics, In press, ⟨10.1109/TVCG.2024.3380100⟩ Article dans une revue hal-04550117v1
UDock2 : interactive real-time multi-body protein–protein docking software Cyprien Plateau-Holleville,Simon Guionnière,Benjamin Boyer,Brian Jiménez-Garcia,Guillaume Levieuxet al. Bioinformatics, 2023, 39 (10), pp.btad609. ⟨10.1093/bioinformatics/btad609⟩ Article dans une revue hal-04356674v1
Surface-based protein domains retrieval methods from a SHREC2021 challenge Florent Langenfeld,Tunde Aderinwale,Charles Christoffer,Woong-Hee Shin,Genki Terashiet al. Journal of Molecular Graphics and Modelling, 2022, 111, pp.108103. ⟨10.1016/j.jmgm.2021.108103⟩ Article dans une revue hal-03538936v1
Computationally driven discovery of SARS-CoV-2 M pro inhibitors: from design to experimental validation Léa El Khoury,Zhifeng Jing,Alberto Cuzzolin,Alessandro Deplano,Daniele Locoet al. Chemical Science, 2022, 13 (13), ⟨10.1039/d1sc05892d⟩ Article dans une revue hal-03361062v1
Neuropilin 1 and Neuropilin 2 gene invalidation or pharmacological inhibition reveals their relevance for the treatment of metastatic renal cell carcinoma Aurore Dumond,Etienne Brachet,Jérôme Durivault,Valérie Vial,Anna Puszkoet al. Journal of experimental & clinical cancer research, 2021, 40, pp.33. ⟨10.1186/s13046-021-01832-x⟩ Article dans une revue hal-03132345v1
Comparative evaluation of shape retrieval methods on macromolecular surfaces: an application of computer vision methods in structural bioinformatics Mohamed Machat,Florent Langenfeld,Daniela Craciun,Léa Sirugue,Taoufik Labibet al. Bioinformatics, 2021, 37 (23), pp.4375-4382. ⟨10.1093/bioinformatics/btab511⟩ Article dans une revue hal-03560225v1
High-Resolution Mining of SARS-CoV-2 Main Protease Conformational Space: Supercomputer-Driven Unsupervised Adaptive Sampling Théo Jaffrelot Inizan,Frederic Célerse,Olivier Adjoua,Dina El Ahdab,Luc-Henri Jollyet al. Chemical Science, 2021, 12 (13), pp.4889-4907. ⟨10.1039/D1SC00145K⟩ Article dans une revue hal-02943694v1
Predicting Potential Endocrine Disrupting Chemicals Binding to Estrogen Receptor α (ERα) Using a Pipeline Combining Structure-Based and Ligand-Based in Silico Methods Asma Sellami,Matthieu Montes,Nathalie Lagarde International Journal of Molecular Sciences, 2021, 22 (6), pp.2846. ⟨10.3390/ijms22062846⟩ Article dans une revue hal-03454597v1
SHREC 2020: multi-domain protein shape retrieval challenge Florent Langenfeld,Yuxu Peng,Yu-Kun Lai,Paul L. Rosin,Tunde Aderinwaleet al. Computers and Graphics, 2020, 91, pp.189-198. ⟨10.1016/j.cag.2020.07.013⟩ Article dans une revue hal-03321566v1
New CXCR1/CXCR2 inhibitors represent an effective treatment for kidney or head and neck cancers sensitive or refractory to reference treatments Maeva Dufies,Oleksandr Grytsai,Cyril Ronco,Oumar Camara,Damien Ambrosettiet al. Theranostics, 2019, 9 (18), pp.5332-5346. ⟨10.7150/thno.34681⟩ Article dans une revue hal-02308756v1
Hits Discovery on the Androgen Receptor: In Silico Approaches to Identify Agonist Compounds Manon Réau,Nathalie Lagarde,Jean-François Zagury,Matthieu Montes Cells, 2019, 8 (11), pp.1431. ⟨10.3390/cells8111431⟩ Article dans une revue hal-03454453v1
New selective cyclooxygenase-2 inhibitors from cyclocoumarol: Synthesis, characterization, biological evaluation and molecular modeling Anita Marie Rayar,Nathalie Lagarde,Frédérique Martin,Florent Blanchard,Bertrand Liagreet al. European Journal of Medicinal Chemistry, 2018, 146, pp.577-587. ⟨10.1016/j.ejmech.2018.01.054⟩ Article dans une revue hal-02453627v1
Update on COX-2 Selective Inhibitors: Chemical Classification, Side Effects and their Use in Cancers and Neuronal Diseases Anita Maria Rayar,Nathalie Lagarde,C. Ferroud,Jean-François Zagury,Matthieu Monteset al. Current Topics in Medicinal Chemistry, 2017, 17 (26), ⟨10.2174/1568026617666170821124947⟩ Article dans une revue hal-01599103v1
Identification of an in vivo orally active dual-binding protein-protein interaction inhibitor targeting TNFα through combined in silico/in vitro/in vivo screening Hadley Mouhsine,Hélène Guillemain,Gabriel Moreau,Najla Fourati,Chouki Zerroukiet al. Scientific Reports, 2017, 7 (1), pp.3424. ⟨10.1038/s41598-017-03427-z⟩ Article dans une revue hal-01679350v1
Predictiveness curves in virtual screening Charly Empereur-Mot,Hélène Guillemain,Aurélien Latouche,Jean-François Zagury,Vivian Viallonet al. Journal of Cheminformatics, 2015, 7 (1), pp.52. ⟨10.1186/s13321-015-0100-8⟩ Article dans une revue hal-01808396v1
Synthesis and structure–activity relationship of non-peptidic antagonists of neuropilin-1 receptor Wang-Qing Liu,Valentino Megale,Lucia Borriello,Bertrand Leforban,Matthieu Monteset al. Bioorganic and Medicinal Chemistry Letters, 2014, 24 (17), pp.4254-4259. ⟨10.1016/j.bmcl.2014.07.028⟩ Article dans une revue istex hal-02126861v1
1,2,4-Oxadiazoles Identified by Virtual Screening and their Non-Covalent Inhibition of the Human 20S Proteasome X. Maréchal,E. Genin,L. Qin,O. Sperandio,M. Monteset al. Current Medicinal Chemistry, 2013, 20 (18), pp.2351 - 2362. ⟨10.2174/0929867311320180006⟩ Article dans une revue istex hal-01408236v1
Novel Organic Proteasome Inhibitors Identified by Virtual and in Vitro Screening Basse Nicolas,Matthieu Montes,Xavier Maréchal,Lixian Qin,Michelle Bouvier-Durandet al. Journal of Medicinal Chemistry, 2009, 53 (1), pp.509-513. ⟨10.1021/jm9011092⟩ Article dans une revue hal-00842659v1
Genomewide Association Study of a Rapid Progression Cohort Identifies New Susceptibility Alleles for AIDS (ANRS Genomewide Association Study 03) Sigrid Le Clerc,Sophie Limou,Cédric Coulonges,Wassila Carpentier,Christian Dinaet al. Journal of Infectious Diseases, 2009, 200 (8), pp.1194-1201. ⟨10.1086/605892⟩ Article dans une revue hal-02566721v1
Genomewide Association Study of an AIDS‐Nonprogression Cohort Emphasizes the Role Played by HLA Genes (ANRS Genomewide Association Study 02) Sophie Limou,Sigrid Le Clerc,Cédric Coulonges,Wassila Carpentier,Christian Dinaet al. Journal of Infectious Diseases, 2009, 199 (3), pp.419-426. ⟨10.1086/596067⟩ Article dans une revue hal-02566791v1
FAF-Drugs: free ADME/tox filtering of compound collections Maria A. Miteva,Stephanie Violas,Matthieu Montes,David Gomez,Pierre Tufferyet al. Nucleic Acids Research, 2006, 34, pp.w738-w744 Article dans une revue inserm-00106930v1
Design, synthesis, and biological evaluation of novel naphthoquinone derivatives with CDC25 phosphatase inhibitory activity. Marie-Priscille Brun,Emmanuelle Braud,Delphine Angotti,Odile Mondésert,Muriel Quarantaet al. Bioorganic and Medicinal Chemistry, 2005, 13 (16), pp.4871-9. ⟨10.1016/j.bmc.2005.05.005⟩ Article dans une revue istex hal-00317419v1

Communication dans un congrès (10)

SHREC 2024: Non-rigid complementary shapes retrieval in protein-protein interactions Taher Yacoub,Nika Zarubina,Camille Depenveiller,H-P Nguyen,V-T Vonget al. 3DOR 2024: Eurographics Workshop on 3D Object Retrieval, Aug 2024, Santiago, Chile. ⟨10.2312/3dor.20241173⟩ Communication dans un congrès hal-04679654v1
Viewpoint Selection for Molecular Visualization: Analysis and Applications Vincent Larroque,Maxime Maria,Stéphane Mérillou,Matthieu Montes 19th International Conference on Computer Graphics Theory and Applications, Feb 2024, Rome, Italy. pp.58-69, ⟨10.5220/0012383300003660⟩ Communication dans un congrès hal-04500514v1
Construction efficace de la surface de systèmes moléculaires complexes sur GPU Cyprien Plateau-Holleville,Matthieu Montes,Maxime Maria,Stéphane Mérillou J.FIG 2023 - Journées Françaises de l'Informatique Graphique, Nov 2023, Montpellier, France Communication dans un congrès hal-04633888v1
Predicting Ligand Binding to Nuclear Receptors Using a Pipeline Combining Docking and Pharmacophore Models Asma Sellami,Matthieu Montes,Nathalie Lagarde 8th Chemoinformatics Strasbourg Summer School, Jun 2022, Strasbourg, France Communication dans un congrès hal-03778832v1
VTX: High-performance molecular structure and dynamics visualization software Maxime Maria,Simon Guionnière,Nicolas Dacquay,Yassine Naïmi,Jean-Philip Piquemalet al. 8th chemoinformatics Strasbourg summer school, Jun 2022, Strasbourg, France Communication dans un congrès hal-03778760v1
Immersive sonification of protein surface Tifanie Bouchara Bouchara,Matthieu Montes 2020 IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops (VRW), Mar 2020, Atlanta, United States. pp.380-383, ⟨10.1109/VRW50115.2020.00082⟩ Communication dans un congrès hal-02922706v1
Sonification Immersive de la Surface de Protéines Tifanie Bouchara Bouchara,Valère Raigneau,Matthieu Montes 30eme conférence francophone sur l'interaction homme-machine, Oct 2018, Brest, France Communication dans un congrès hal-01899165v1
Surface Acoustic Wave Biosensors for the Quantification of TNF-α/SPD-304 Interaction Gabriel Moreau,Najla Fourati,C. Zerrouki,Hadley Mouhsine,Matthieu Monteset al. Eurosensor 2016, Sep 2016, Budapest, Hungary. pp.432-435, ⟨10.1016/j.proeng.2016.11.537⟩ Communication dans un congrès hal-01679376v1
Towards Real-Time Interactive Visualization Modes of Molecular Surfaces: Examples with Udock Guillaume Levieux,Matthieu Montes IEEE VR 2015 workshop on Virtual and Augmented Reality dedicated to Molecular Science (VARMS), Mar 2015, Arles, France. ⟨10.1109/VARMS.2015.7151723⟩ Communication dans un congrès hal-01126603v1
Udock, the interactive docking entertainment system Guillaume Levieux,Guillaume Tiger,Stéphanie Mader,Jean-François Zagury,Stéphane Natkinet al. Faraday Discussions, May 2014, Nottingham, France. pp.425-441 Communication dans un congrès hal-01126514v1

Brevet (1)

Compounds and methods for treating a cytokine mediated disease Marc Port,Maité Sylla-Iyarreta,Matthieu Montes,Mohamed Benchekroun,Aïda Mascretet al. France, Patent n° : WO2022101453. 2022 Brevet hal-03960147v1

Pré-publication, Document de travail (1)

Pushing the Accuracy Limit of Foundation Neural Network Models with Quantum Monte Carlo Forces and Path Integrals Anouar Benali,Thomas Plé,Olivier Adjoua,Valay Agarawal,Thomas Applencourtet al. 2025 Pré-publication, Document de travail hal-05030325v1