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Mouhamadou Ba

36
Documents

Publications

Migale et son offre de service de text-mining

Valentin Loux , Mouhamadou Ba
Journées du PEPI IBIS, INRAE, Sep 2023, Paris, France
Conference papers hal-04294052v1
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Handling Entity Normalization with no Annotated Corpus: Weakly Supervised Methods Based on Distributional Representation and Ontological Information

Arnaud Ferré , Robert Bossy , Mouhamadou Ba , Louise Deleger , Thomas Lavergne
12th Conference on Language Resources and Evaluation, May 2020, Marseille, France. pp.1959-1966
Conference papers hal-02866789v1
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Relier automatiquement des entités textuelles à des concepts d'une ontologie par apprentissage avec (presque) aucune donnée

Arnaud Ferré , Mouhamadou Ba , Robert Bossy , Thomas Lavergne , Louise Deléger
Atelier IN-OVIVE 7ème édition, des 30èmes Journées francophones d'Ingénierie des Connaissances, Jul 2019, Toulouse, France
Conference papers hal-03530148v1
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Bacteria Biotope at BioNLP Open Shared Tasks 2019

Robert Bossy , Louise Deleger , Estelle Chaix , Mouhamadou Ba , Claire Nédellec
5th Workshop on BioNLP Open Shared Tasks BioNLP-OST@EMNLP-IJCNLP 2019, Association for Computational Linguistics, Jin-Dong Kim; Claire Nédellec; Robert Bossy; Louise Deléger, Nov 2019, Hong-Kong, Hong Kong SAR China. ⟨10.18653/v1/D19-5719⟩
Conference papers hal-02437609v1

Data Exchange Solution between PubAnnotation and AlvisAE

Mouhamadou Ba , Claire Nédellec , Robert Bossy
BLAH4, Jan 2018, Tokyo, Japan. pp.1
Conference papers hal-02785063v1
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Customized automatic corpus annotations using AlvisNLP/ML

Mouhamadou Ba , Robert Bossy , Claire Nédellec
BLAH3, Jan 2017, Tokyo, Japan. 11 diapos
Conference papers hal-02790613v1

Florilège: a database gathering microbial phenotypes of food interest

Hélène Falentin , Estelle Chaix , Bedis Dridi , Philippe Bessieres , S Buchin
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Conference papers hal-01607327v1

Integration of Alvis within the OpenMinTeD platform as Galaxy utilities

Jean-Baptiste Bohuon , Mouhamadou Ba , Estelle Chaix , Robert Bossy , Claire Nédellec
Galaxy Community Conference, Jun 2017, Montpellier, France. pp.1, ⟨10.5281/zenodo.200370⟩
Conference papers hal-01556276v1

Overview of the bacteria biotope task at BioNLP shared task

Louise Deleger , Robert Bossy , Estelle Chaix , Mouhamadou Ba , Arnaud Ferré
BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.101
Conference papers hal-01455857v1
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Interoperability of corpus processing workflow engines: the case of. AlvisNLP/ML in OpenMinTeD

Mouhamadou Ba , Robert Bossy
Meeting of working Group Medicago sativa, May 2016, Portoroz, Slovenia
Conference papers hal-01455853v1
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OntoBiotope: une ontologie pour croiser les habitats microbiens avec les analyses de génomes.

Robert Bossy , Estelle Chaix , Louise Deleger , Arnaud Ferré , Mouhamadou Ba
Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1
Conference papers hal-01455856v1
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Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016

Estelle Chaix , Bertrand Dubreucq , Abdelhak Fatihi , Dialekti Valsamou , Robert Bossy
BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113
Conference papers hal-01455854v1
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Safe Suggestions Based on Type Convertibility to Guide Workflow Composition

Mouhamadou Ba , Sébastien Ferré , Mireille Ducassé
Foundations of Intelligent Systems (ISMIS), Oct 2015, Lyon, France. ⟨10.1007/978-3-319-25252-0_25⟩
Conference papers hal-01252775v1

Generating Data Converters to Help Compose Services in Bioinformatics Workflows

Mouhamadou Ba , Sébastien Ferré , Mireille Ducassé
Int. Conf. Database and Expert Systems Applications (DEXA), 2014, Munich, Germany. pp.15
Conference papers hal-01122399v1
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Convertibilité entre types d'entrée et de sortie pour la composition de services en bio-informatique

Mouhamadou Ba , Sébastien Ferré , Mireille Ducassé
Reconnaissance de Formes et Intelligence Artificielle (RFIA) 2014, Jun 2014, France
Conference papers hal-00989229v1

Convertibility between input and output types to help compose services in bioinformatics

Mouhamadou Ba , Sébastien Ferré , Mireille Ducassé
Colloque africain sur la recherche en informatique et mathématiques appliquées (CARI),, 2014, Saint-Louis, Senegal
Conference papers hal-01122403v1
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Implementing a Text Mining Service Offer on the Migale Bioinformatics Platform

Mouhamadou Ba , Véronique Martin , Olivier Rué , Sophie Schbath , Valérie Vidal
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Conference poster hal-04176740v1
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Omnicrobe, an open-access database of microbial habitats, phenotypes and uses extracted from text

Sandra Dérozier , Robert Bossy , Louise Deléger , Mouhamadou Ba , Estelle Chaix
JOBIM 2022, Jul 2022, Rennes, France. , Proceedings Posters Demos, pp.42
Conference poster hal-04061565v1
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Omnicrobe : une base de données d’habitats et de phénotypes microbiens

Hélène Falentin , Olivier Harlé , Sandra Derozier , Louise Deléger , Estelle Chaix
23ème édition du colloque du Club des Bactéries Lactiques, Jun 2022, Rennes, France. , 2022
Conference poster hal-03694214v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Conference poster hal-04176761v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021
Conference poster hal-04176768v1
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Florilege, a database gathering microbial habitats, phenotypes and uses

Sandra Derozier , Louise Deleger , Estelle Chaix , Reda Mekdad , Mouhamadou Ba
JOBIM 2020, Jun 2020, Montpellier, France
Conference poster hal-02904156v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Damien Berry , David Christiany , Hélène Chiapello , Olivier Inizan
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Conference poster hal-04176782v1

To better benefit from shared tasks in biomedical text mining

Mouhamadou Ba , Arnaud Ferré , Richard Eckart de Castilho , Robert Bossy , Louise Deleger
Galaxy Community Conference, Jul 2019, Freiburg, Germany. 2019
Conference poster hal-02437622v1
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity

Sophie Aubin , Anne-Francoise Adam-Blondon , Michael Alaux , Mouhamadou Ba , Stéphan Bernard
14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩
Conference poster lirmm-02351000v1
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FLORILEGE: an integrative database using text mining and ontologies

Estelle Chaix , Sandra Derozier , Louise Deleger , Hélène Falentin , Jean-Baptiste Bohuon
JOBIM 2018, Jul 2018, Marseille, France. , 2018, ABSTRACTS JOBIM 2018
Conference poster hal-01827946v1
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La suite Alvis, plateforme d’analyse de contenu textuel, et son intégration dans OpenMinTeD

Mouhamadou Ba , Robert Bossy , Claire Nédellec
JDEV 2017, Jul 2017, Marsaille, France. , pp.1, 2017
Conference poster hal-02785705v1
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Florilege : a database gathering microbial phenotypes of food interest

Hélène Falentin , Estelle Chaix , Bedis Dridi , Philippe Bessieres , S Buchin
4th International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. , 2017
Conference poster hal-01651302v1