Mouhamadou Ba
Publications
Publications
Migale et son offre de service de text-miningJournées du PEPI IBIS, INRAE, Sep 2023, Paris, France |
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Handling Entity Normalization with no Annotated Corpus: Weakly Supervised Methods Based on Distributional Representation and Ontological Information12th Conference on Language Resources and Evaluation, May 2020, Marseille, France. pp.1959-1966 |
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Relier automatiquement des entités textuelles à des concepts d'une ontologie par apprentissage avec (presque) aucune donnéeAtelier IN-OVIVE 7ème édition, des 30èmes Journées francophones d'Ingénierie des Connaissances, Jul 2019, Toulouse, France |
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Bacteria Biotope at BioNLP Open Shared Tasks 20195th Workshop on BioNLP Open Shared Tasks BioNLP-OST@EMNLP-IJCNLP 2019, Association for Computational Linguistics, Jin-Dong Kim; Claire Nédellec; Robert Bossy; Louise Deléger, Nov 2019, Hong-Kong, Hong Kong SAR China. ⟨10.18653/v1/D19-5719⟩ |
Data Exchange Solution between PubAnnotation and AlvisAEBLAH4, Jan 2018, Tokyo, Japan. pp.1 |
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Florilège: a database gathering microbial phenotypes of food interest2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France |
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Customized automatic corpus annotations using AlvisNLP/MLBLAH3, Jan 2017, Tokyo, Japan. 11 diapos |
Integration of Alvis within the OpenMinTeD platform as Galaxy utilitiesGalaxy Community Conference, Jun 2017, Montpellier, France. pp.1, ⟨10.5281/zenodo.200370⟩ |
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Overview of the bacteria biotope task at BioNLP shared taskBioNLP Shared Task, Aug 2016, Berlin, Germany. pp.101 |
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OntoBiotope: une ontologie pour croiser les habitats microbiens avec les analyses de génomes.Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1 |
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Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113 |
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Interoperability of corpus processing workflow engines: the case of. AlvisNLP/ML in OpenMinTeDMeeting of working Group Medicago sativa, May 2016, Portoroz, Slovenia |
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Safe Suggestions Based on Type Convertibility to Guide Workflow CompositionFoundations of Intelligent Systems (ISMIS), Oct 2015, Lyon, France. ⟨10.1007/978-3-319-25252-0_25⟩ |
Generating Data Converters to Help Compose Services in Bioinformatics WorkflowsInt. Conf. Database and Expert Systems Applications (DEXA), 2014, Munich, Germany. pp.15 |
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Convertibility between input and output types to help compose services in bioinformaticsColloque africain sur la recherche en informatique et mathématiques appliquées (CARI),, 2014, Saint-Louis, Senegal |
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Convertibilité entre types d'entrée et de sortie pour la composition de services en bio-informatiqueReconnaissance de Formes et Intelligence Artificielle (RFIA) 2014, Jun 2014, France |
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HoloOLIGO corpus, a manually annotated text dataset supporting schema-based relational information extraction for mammalian milk oligosaccharide diversity pattern comprehensionJournées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2024, Toulouse, France |
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Plateforme bioinformatique MIGALEJournées Ouvertes Biologie Informatique Mathématique (JOBIM), Jun 2024, Toulouse, France |
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Omnicrobe : une base de données d’habitats et de phénotypes microbiens23ème édition du colloque du Club des Bactéries Lactiques, Jun 2022, Rennes, France. , 2022 |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022 |
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Omnicrobe, an open-access database of microbial habitats, phenotypes and uses extracted from textJOBIM 2022, Jul 2022, Rennes, France. , Proceedings Posters Demos, pp.42 |
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Implementing a Text Mining Service Offer on the Migale Bioinformatics PlatformJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022 |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021 |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020 |
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Florilege, a database gathering microbial habitats, phenotypes and usesJOBIM 2020, Jun 2020, Montpellier, France |
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩ |
To better benefit from shared tasks in biomedical text miningGalaxy Community Conference, Jul 2019, Freiburg, Germany. 2019 |
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FLORILEGE: an integrative database using text mining and ontologiesJOBIM 2018, Jul 2018, Marseille, France. , 2018, ABSTRACTS JOBIM 2018 |
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Florilege : a database gathering microbial phenotypes of food interest4. International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. , 2017 |
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La suite Alvis, plateforme d’analyse de contenu textuel, et son intégration dans OpenMinTeDJDEV 2017, Jul 2017, Marsaille, France. , pp.1, 2017 |
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Bacteria biotope annotation guidelines2019, 30 p |
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Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016.2016, pp.1-11. ⟨10.18653/v1/W16-3001⟩ |
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Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach2022 |
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MilkOligoCorpus annotation guidelinesINRAE. 2024 |
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Composition guidée de services : application aux workflows d’analyse de données en bio-informatiqueBio-informatique [q-bio.QM]. INSA de Rennes, 2015. Français. ⟨NNT : 2015ISAR0024⟩ |