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Manolo Gouy



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A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea

Monique Aouad , Jean-Pierre Flandrois , Frédéric Jauffrit , Manolo Gouy , Simonetta Gribaldo
BMC Ecology and Evolution, 2022, 22 (1), pp.1-12. ⟨10.1186/s12862-021-01952-0⟩
Journal articles hal-03514913v1
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Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins : Deciphering Gene Trajectories and Changes in Biochemical Properties

Samuel Blanquart , Mathieu Groussin , Aline Le Roy , Gergely J Szöllosi , Eric Girard
Molecular Biology and Evolution, 2021, pp.1-44. ⟨10.1093/molbev/msab146⟩
Journal articles hal-03231689v1

The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study

Michel Lecocq , Mathieu Groussin , Manolo Gouy , Celine Brochier-Armanet
Molecular Biology and Evolution, 2021, 38 (5), pp.1761-1776. ⟨10.1093/molbev/msaa312⟩
Journal articles hal-03118165v1
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Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte , Benoît Morel , Damir Hasic , Laurent Guéguen , Bastien Boussau
Bioinformatics, 2020, 36 (18), pp.4822-4824. ⟨10.1093/bioinformatics/btaa615⟩
Journal articles hal-02883386v1
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Extreme halophilic archaea derive from two distinct methanogen Class II lineages

Monique Aouad , Najwa Taïb , Anne Oudart , Michel Lecocq , Manolo Gouy
Molecular Phylogenetics and Evolution, 2018, 127, pp.46-54. ⟨10.1016/j.ympev.2018.04.011⟩
Journal articles hal-01799910v1
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

Mathieu Groussin , Bastien Boussau , Gergely J Szollosi , Laura Eme , Manolo Gouy
Molecular Biology and Evolution, 2016, 33 (2), pp.305 - 310. ⟨10.1093/molbev/msv249⟩
Journal articles hal-01913926v1

RiboDB database: a comprehensive resource for prokaryotic systematics

Frédéric Jauffrit , Simon Penel , Stéphane Delmotte , Carine Rey , Damien M de Vienne
Molecular Biology and Evolution, 2016, 33 (8), pp.2170--2172. ⟨10.1093/molbev/msw088⟩
Journal articles hal-01800061v1
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Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees

M. Groussin , J. K. Hobbs , G. J. Szollosi , S. Gribaldo , V. L. Arcus
Molecular Biology and Evolution, 2015, 32, pp.13-22. ⟨10.1093/molbev/msu305⟩
Journal articles hal-02044770v1
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leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences

Jean-Pierre Flandrois , G. Perrière , Manolo Gouy
BMC Bioinformatics, 2015, 16 (1), pp.251. ⟨10.1186/s12859-015-0692-z⟩
Journal articles hal-02044751v1
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Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes

Nc. Rochette , Céline Brochier-Armanet , M. Gouy
Molecular Biology and Evolution, 2014, 31 (4), pp.832-45. ⟨10.1093/molbev/mst272⟩
Journal articles hal-02045522v1
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Genome-scale coestimation of species and gene trees.

Bastien Boussau , Gergely J Szöllosi , L. Duret , Manolo Gouy , Eric Tannier
Genome Research, 2013, 23 (2), pp.323-330. ⟨10.1101/gr.141978.112⟩
Journal articles hal-00750148v1
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Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution

Laurent Gueguen , Sylvain Gaillard , Bastien Boussau , Manolo Gouy , Mathieu Groussin
Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩
Journal articles hal-01209906v1

Experimental assessment of the accuracy of genomic selection in sugarcane

M. Gouy , Y. Rousselle , Denis Bastianelli , Philippe Lecomte , Laurent Bonnal
TAG Theoretical and Applied Genetics, 2013, 126 (10), pp.2575-2586. ⟨10.1007/s00122-013-2156-z⟩
Journal articles hal-02648497v1
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The molecular signal for the adaptation to cold temperature during early life on Earth

Mathieu Groussin , Bastien Boussau , Sandrine Charles , Samuel Blanquart , Manolo Gouy
Biology Letters, 2013, 9 (5), pp.20130608. ⟨10.1098/rsbl.2013.0608⟩
Journal articles hal-00918283v1
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A Branch-Heterogeneous Model of Protein Evolution for Efficient Inference of Ancestral Sequences

M. Groussin , Bastien Boussau , Manolo Gouy
Systematic Biology, 2013, 62 (4), pp.523-538. ⟨10.1093/sysbio/syt016⟩
Journal articles hal-02320419v1
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What genomes have to say about the evolution of the Earth

Bastien Boussau , Manolo Gouy
Gondwana Research, 2012, 21, pp.483-494. ⟨10.1016/⟩
Journal articles hal-00698400v1
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Lateral gene transfer as a support for the tree of life.

Sophie S Abby , Eric Tannier , Manolo Gouy , Vincent Daubin
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (13), pp.4962-4967. ⟨10.1073/pnas.1116871109⟩
Journal articles hal-00752055v1
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Species identification of staphylococci by amplification and sequencing of the tuf gene compared to the gap gene and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.

Marie Bergeron , Olivier Dauwalder , Manolo Gouy , Anne-Marie Freydiere , Michèle Bes
European Journal of Clinical Microbiology and Infectious Diseases, 2011, 30 (3), pp.343-54. ⟨10.1007/s10096-010-1091-z⟩
Journal articles hal-00698367v1

Adaptation to Environmental Temperature Is a Major Determinant of Molecular Evolutionary Rates in Archaea

M. Groussin , Manolo Gouy
Molecular Biology and Evolution, 2011, 28, pp.2661-2674. ⟨10.1093/molbev/msr098⟩
Journal articles hal-00697929v1

Proposals for classification methods dedicated to biological data

Anne-Muriel Arigon Chifolleau , Guy Perrière , Manolo Gouy
International Journal of Biomedical Engineering and Technology (IJBET), 2010, 3 (1/2), pp.4-21. ⟨10.1504/IJBET.2010.029649⟩
Journal articles lirmm-00830931v1
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Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

Sophie S. Abby , Eric Tannier , Manolo Gouy , Vincent Daubin
BMC Bioinformatics, 2010, 11 (324), pp.13. ⟨10.1186/1471-2105-11-324⟩
Journal articles inria-00527151v1
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Species identification of staphylococci by amplification and sequencing of the gene compared to the gene and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry

M. Bergeron , O. Dauwalder , M. Gouy , A.-M. Freydiere , M. Bes
European Journal of Clinical Microbiology and Infectious Diseases, 2010, pp.343-354. ⟨10.1007/s10096-010-1091-z⟩
Journal articles hal-00634698v1
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SeaView Version 4: a Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

Manolo Gouy , Stéphane Guindon , Olivier Gascuel
Molecular Biology and Evolution, 2010, 27, pp.221-224. ⟨10.1093/molbev/msp259⟩
Journal articles lirmm-00511794v2

A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies

Bastien Boussau , Laurent Guéguen , Manolo Gouy
Evolutionary Bioinformatics, 2009, 5, pp.67-79. ⟨10.4137/EBO.S2242⟩
Journal articles hal-00428395v1

In Retrospect: Lamarck's treatise at 200

Dan Graur , Manolo Gouy , David Wool
Nature, 2009, 460 (7256), pp.688-689. ⟨10.1038/460688a⟩
Journal articles hal-02320435v1
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Databases of Homologous Gene Families for Comparative Genomics

Simon Penel , Anne-Muriel Arigon Chifolleau , Jean-François Dufayard , Anne-Sophie Sertier , Vincent Daubin
BMC Bioinformatics, 2009, 10 (Suppl.6) :S3, pp.13. ⟨10.1186/1471-2105-10-S6-S3⟩
Journal articles lirmm-00400099v1

Polymorphism of the Staphylococcus aureus Panton-Valentine LeukocidinGenes and Its Possible Link with the Fitness of Community-Associated Methicillin-Resistant S. aureus

O. Dumitrescu , A. Tristan , H. Meugnier , M. Bes , Manolo Gouy
Journal of Infectious Diseases, 2008, 198 (5), pp.792-794. ⟨10.1086/590914⟩
Journal articles hal-00428303v1
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Ancient bacteria liked it hot

M. Gouy , M. Chaussidon
Nature, 2008, 451, pp.635-636. ⟨10.1038/451635a⟩
Journal articles hal-00345924v1
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Automatic Identification of Large Collections of Protein-Coding or rRNA Sequences

Anne-Muriel Arigon Chifolleau , Guy Perrière , Manolo Gouy
Biochimie, 2008, 90 (4), pp.609-614. ⟨10.1016/j.biochi.2007.08.006⟩
Journal articles lirmm-00366131v1
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Remote access to ACNUC nucleotide and protein sequence databases at PBIL

Manolo Gouy , Stephane Delmotte
Biochimie, 2008, 90 (4), pp.555-562. ⟨10.1016/j.biochi.2007.07.003⟩
Journal articles hal-00428117v1

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

Bastien Boussau , Laurent Guéguen , Manolo Gouy
BMC Evolutionary Biology, 2008, 8, pp.272-272. ⟨10.1186/1471-2148-8-272⟩
Journal articles hal-00428101v1
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Parallel Adaptations to High Temperatures in the Archean Eon

Bastien Boussau , Samuel Blanquart , Anamaria Necsulea , Nicolas Lartillot , Manolo Gouy
Nature, 2008, 456 (7224), pp.942-945. ⟨10.1038/nature07393⟩
Journal articles lirmm-00324159v1

Efficient Likelihood Computations with Nonreversible Models of Evolution

Bastien Boussau , Manolo Gouy
Systematic Biology, 2006, 55 (5), pp.756-768. ⟨10.1080/10635150600975218⟩
Journal articles hal-00427908v1

Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation

T. Lefébure , C.J. Douady , Manolo Gouy , J. Gibert
Molecular Phylogenetics and Evolution, 2006, 40 (2), pp.435-447. ⟨10.1016/j.ympev.2006.03.014⟩
Journal articles hal-00427988v1

HoSeql : automated homologous sequence identification in gene family databases

Anne-Muriel Arigon Chifolleau , G. Perrière , Manolo Gouy
Bioinformatics, 2006, 22 (14), pp.1786-1787. ⟨10.1093/bioinformatics/btl179⟩
Journal articles hal-00427893v1

Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains.

Julien Grassot , Manolo Gouy , Guy Perrière , Guy Mouchiroud
Molecular Biology and Evolution, 2006, 23 (6), pp.1232-41. ⟨10.1093/molbev/msk007⟩
Journal articles hal-00192848v1

Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments

T. Lefébure , C.J. Douady , Manolo Gouy , P. Trontel , J. Briolay
Molecular Ecology, 2006, 15, pp.1797-1806. ⟨10.1111/j.1365-294X.2006.02888.x⟩
Journal articles hal-00427985v1

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

A. Aouacheria , V. Navratil , W. Wen , M. Jiang , Dominique Mouchiroud
Oncogene, 2005, 24, pp.6133-6142. ⟨10.1038/sj.onc.1208745⟩
Journal articles hal-00427704v1

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

A. Calteau , Manolo Gouy , G. Perrière
Journal of Molecular Evolution, 2005, 60 (5), pp.557-65. ⟨10.1007/s00239-004-0094-8⟩
Journal articles hal-00427722v1

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Jean-François Dufayard , L. Duret , Simon Penel , Manolo Gouy , F. Rechenmann
Bioinformatics, 2005, 21 (11), pp.2596-603. ⟨10.1093/bioinformatics/bti325⟩
Journal articles hal-00427861v1

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity

V. Huguet , Manolo Gouy , P. Normand , J.F. Zimpfer , M.P. Fernandez
Molecular Phylogenetics and Evolution, 2005, 34 (3), pp.557-568. ⟨10.1016/j.ympev.2004.11.018⟩
Journal articles hal-00427839v1

Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes

H. Aurell , Pierre Farge , H. Meugnier , Manolo Gouy , F. Forey
Applied and Environmental Microbiology, 2005, 71, pp.282-289. ⟨10.1128/AEM.71.1.282-289.2005⟩
Journal articles hal-00427706v1

Phylogenomics of Life-Or-Death Switches in Multicellular Animals: Bcl-2, BH3-Only, and BNip Families of Apoptotic Regulators

A. Aouacheria , F. Brunet , Manolo Gouy
Molecular Biology and Evolution, 2005, 22 (12), pp.2395-2416. ⟨10.1093/molbev/msi234⟩
Journal articles hal-00427703v1
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Invertebrate Data Predict an Early Emergence of Vertebrate Fibrillar Collagen Clades and an Anti-incest Model

Abdel Aouacheria , Caroline Cluzel , Claire Lethias , Manolo Gouy , Robert Garrone
Journal of Biological Chemistry, 2004, 279 (46), pp.47711-47719. ⟨10.1074/jbc.M408950200⟩
Journal articles hal-00427534v2

Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes

F. Thomarat , Christian Vivarès , Manolo Gouy
Journal of Molecular Evolution, 2004, 59, pp.780-791. ⟨10.1007/s00239-004-2673-0⟩
Journal articles hal-00427661v1
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Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences.

Frédérique Le Roux , Mélanie Gay , Christophe Lambert , Jean-Louis Nicolas , Manolo Gouy
Diseases of Aquatic Organisms, 2004, 58 (2-3), pp.143-150. ⟨10.3354/dao058143⟩
Journal articles hal-00458183v1

Integrated databanks access and sequence/structure analysis services at the PBIL.

G. Perriere , C. Combet , Simon Penel , Christophe Blanchet , J. Thioulouse
Nucleic Acids Research, 2003, 31 (13), pp.3393-3399. ⟨10.1093/nar/gkg530⟩
Journal articles hal-00313743v1

Automatic RNA secondary structure prediction with a comparative approach

F. Tahi , Manolo Gouy , M. Regnier
Journal of Computational Chemistry, 2002, 26 (5), pp.521-530. ⟨10.1016/S0097-8485(02)00012-8⟩
Journal articles hal-00427303v1

Functional and evolutionary analysis of a eukaryotic parasitic genome

Christian Vivarès , Manolo Gouy , F. Thomarat , G. Metenier
Current Opinion in Microbiology, 2002, 5, pp.499-505. ⟨10.1016/S1369-5274(02)00356-9⟩
Journal articles hal-00427309v1

Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

C. Rizzon , Gabriel Marais , Manolo Gouy , C. Biémont
Genome Research, 2002, 12, pp.400-407. ⟨10.1101/gr.210802⟩
Journal articles hal-00427298v1

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Vincent Daubin , Manolo Gouy , G. Perrière
Genome Research, 2002, 12, pp.1080-1090. ⟨10.1101/gr.187002⟩
Journal articles hal-00427259v1

Nrh, a human homologue of Nr-13 associates with Bcl-Xs and is an inhibitor of apoptosis

A. Aouacheria , Estelle Arnaud , S. Venet , P. Lalle , M. Gouy
Oncogene, 2001, 20, pp.5846-5855. ⟨10.1038/sj.onc.1204740⟩
Journal articles hal-00314329v1

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

M.D. Katinka , S. Duprat , E. Cornillot , G. Metenier , F. Thomarat
Nature, 2001, 414, pp.450-453. ⟨10.1038/35106579⟩
Journal articles hal-00427201v1

Molecular evidence for the existence of two species of Marteilia in Europe

F. Le Roux , G. Lorenzo , P. Peyret , C. Audemard , A. Figueras
Journal of Eukaryotic Microbiology, 2001, 48 (4), pp.449-454. ⟨10.1111/j.1550-7408.2001.tb00178.x⟩
Journal articles hal-00427181v1

Lipid phosphate phosphatases in Arabidopsis. Regulation of the AtLPP1 gene in response to stress

O. Pierrugues , C. Brutesco , J. Oshiro , Manolo Gouy , Y. Deveaux
Journal of Biological Chemistry, 2001, 276 (23), pp.20300-20308. ⟨10.1074/jbc.M009726200⟩
Journal articles hal-00427174v1

Sequence of the Small Subunit Ribosomal RNA Gene of Perkinsus atlanticus-like Isolated from Carpet Shell Clam in Galicia Spain

A. Figueras , G. Lorenzo , M.C. Ordas , Manolo Gouy , B. Novoa
Marine Biotechnology, 2000, 2, pp.419-428. ⟨10.1007/s101260000015⟩
Journal articles hal-00427078v1

HOBACGEN: database system for comparative genomics in bacteria

G. Perrière , L. Duret , Manolo Gouy
Genome Research, 2000, 10, pp.379-385. ⟨10.1101/gr.10.3.379⟩
Journal articles hal-00427099v1

Phylogenetic analysis of the small subunit ribosomal RNA of Marteilia refringens validates the existence of phylum Paramyxea (Desportes and Perkins 1990)

F.C. Berthe , F. Le Roux , E. Peyretaillade , P. Peyret , D. Rodriguez
Journal of Eukaryotic Microbiology, 2000, 47 (3), pp.288-293. ⟨10.1111/j.1550-7408.2000.tb00049.x⟩
Journal articles hal-00427063v1

A nonhyperthermophilic common ancestor to extant life forms

N. Galtier , N. Tourasse , Manolo Gouy
Science, 1999, 283 (5399), pp.220-221. ⟨10.1126/science.283.5399.220⟩
Journal articles hal-00428447v1

Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes

N.J. Tourasse , Manolo Gouy
Molecular Phylogenetics and Evolution, 1999, 13, pp.159-168. ⟨10.1006/mpev.1999.0675⟩
Journal articles hal-00428462v1

Microsporidian Encephalitozoon cuniculi a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core

E. Peyretaillade , C. Biderre , P. Peyret , F. Duffieux , G. Metenier
Nucleic Acids Research, 1998, 26, pp.3513-3520. ⟨10.1093/nar/26.15.3513⟩
Journal articles hal-00428508v1

Sensitivity of the relative-rate test to taxonomic sampling

M. Robinson , Manolo Gouy , Christian Gautier , Dominique Mouchiroud
Molecular Biology and Evolution, 1998, 15 (9), pp.1091-1098. ⟨10.1093/oxfordjournals.molbev.a026016⟩
Journal articles hal-00428501v1
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Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis

N. Galtier , Manolo Gouy
Molecular Biology and Evolution, 1998, 15 (7), pp.871-879. ⟨10.1093/oxfordjournals.molbev.a025991⟩
Journal articles hal-00428472v1

The non-redundant Bacillus subtilis (NRSub) database: update 1998

G. Perrière , Manolo Gouy , T. Gojobori
Nucleic Acids Research, 1998, 26 (1), pp.60-62. ⟨10.1093/nar/26.1.60⟩
Journal articles hal-00428499v1

Multiple sequence alignment with Clustal X

F. Jeanmougin , J.D. Thompson , Manolo Gouy , D.G. Higgins , T.J. Gibson
Trends in Biochemical Sciences, 1998, 23 (10), pp.403-405. ⟨10.1016/S0968-0004(98)01285-7⟩
Journal articles hal-00428491v1

Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyta Prasinophyceae)

C. Courties , R. Perasso , M.-J. Chrétiennot-Dinet , Manolo Gouy , Laure Guillou
Journal of Phycology, 1998, 34, pp.844-849. ⟨10.1046/j.1529-8817.1998.340844.x⟩
Journal articles hal-00428471v1

Microsporidia amitochondrial protists possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin

E. Peyretaillade , V. Broussolle , P. Peyret , G. Metenier , Manolo Gouy
Molecular Biology and Evolution, 1998, 15, pp.683-689. ⟨10.1093/oxfordjournals.molbev.a025971⟩
Journal articles hal-00428498v1

Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record

J. Pawlowski , I. Bolivar , J.F. Fahrni , C. de Vargas , Manolo Gouy
Molecular Biology and Evolution, 1997, 14 (5), pp.498-505. ⟨10.1093/oxfordjournals.molbev.a025786⟩
Journal articles hal-00434978v1

Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony

N.J. Tourasse , Manolo Gouy
Molecular Biology and Evolution, 1997, 14 (3), pp.287-298. ⟨10.1093/oxfordjournals.molbev.a025764⟩
Journal articles hal-00434995v1

Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata

D. Graur , Manolo Gouy , L. Duret
Molecular Phylogenetics and Evolution, 1997, 7 (2), pp.195-200. ⟨10.1006/mpev.1996.0391⟩
Journal articles hal-00434984v1

Early origin of foraminifera suggested by SSU rRNA gene sequences

J. Pawlowski , I. Bolivar , J.F. Fahrni , T. Cavalier-Smith , Manolo Gouy
Molecular Biology and Evolution, 1996, 13 (3), pp.445-450. ⟨10.1093/oxfordjournals.molbev.a025605⟩
Journal articles hal-00435033v1

WWW-query: an on-line retrieval system for biological sequence banks

G. Perrière , Manolo Gouy
Biochimie, 1996, 78 (5), pp.364-369. ⟨10.1016/0300-9084(96)84768-7⟩
Journal articles hal-00435034v1

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

N. Galtier , Manolo Gouy , Christian Gautier
Bioinformatics, 1996, 12 (6), pp.543-548. ⟨10.1093/bioinformatics/12.6.543⟩
Journal articles hal-00435028v1

Phylogenetic position of the order Lagomorpha (rabbits hares and allies)

D. Graur , L. Duret , Manolo Gouy
Nature, 1996, 379, pp.333-335. ⟨10.1038/379333a0⟩
Journal articles hal-00435019v1

Isolation and characterization of a cDNA encoding a chicken actin-like protein

J.J. Michaille , Manolo Gouy , Simon Blanchet , L. Duret
Gene, 1995, 154 (2), pp.205-209. ⟨10.1016/0378-1119(94)00865-P⟩
Journal articles hal-00698055v1

Inferring phylogenies from DNA sequences of unequal base compositions.

N. Galtier , Manolo Gouy
Proceedings of the National Academy of Sciences of the United States of America, 1995, 92 (24), pp.11317-11321. ⟨10.1073/pnas.92.24.11317⟩
Journal articles hal-02320510v1

Heterogeneity of hepatitis C virus genotypes in France

D. Qu , O. Hantz , Manolo Gouy , L. Vitvitski , J.S. Li
Journal of General Virology, 1994, 75 ( Pt 5), pp.1063-1070. ⟨10.1099/0022-1317-75-5-1063⟩
Journal articles hal-00698153v1

Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences

J. Pawlowski , I. Bolivar , J. Guiard-Maffia , Manolo Gouy
Molecular Biology and Evolution, 1994, 11 (6), pp.929-938. ⟨10.1093/oxfordjournals.molbev.a040174⟩
Journal articles hal-00698124v1

Molecular Phylogenetic Analysis of Nitrobacter spp

S. Orso , Manolo Gouy , E. Navarro , P. Normand
International Journal of Systematic Bacteriology, 1994, 44 (1), pp.83-86. ⟨10.1099/00207713-44-1-83⟩
Journal articles hal-00698105v1

Molecular phylogeny of Eubacteria: a new multiple tree analysis method applied to 15 sequence data sets questions the monophyly of Gram-positive bacteria

N. Galtier , Manolo Gouy
Research in Microbiology, 1994, 145 (7), pp.531-541. ⟨10.1016/0923-2508(94)90030-2⟩
Journal articles hal-02320465v1

HOVERGEN: a database of homologous vertebrate genes

L. Duret , Dominique Mouchiroud , Manolo Gouy
Nucleic Acids Research, 1994, 22 (12), pp.2360-2365. ⟨10.1093/nar/22.12.2360⟩
Journal articles hal-00698069v1

NRSub: a non-redundant data base for the Bacillus subtilis genome

G. Perrière , Manolo Gouy , T. Gojobori
Nucleic Acids Research, 1994, 22 (25), pp.5525-5529. ⟨10.1093/nar/22.25.5525⟩
Journal articles hal-00698135v1

Molecular phylogeny of the symbiotic actinomycetes of the genus Frankia matches host-plant infection processes.

Benoit Cournoyer , Manolo Gouy , Philippe Normand
Molecular Biology and Evolution, 1993, ⟨10.1093/oxfordjournals.molbev.a040077⟩
Journal articles hal-02320516v1

Evolution of the primate beta-globin gene region: nucleotide sequence of the delta-beta-globin intergenic region of gorilla and phylogenetic relationships between African apes and man

P. Perrin-Pecontal , Manolo Gouy , V.M. Nigon , G. Trabuchet
Journal of Molecular Evolution, 1992, 34, pp.17-30. ⟨10.1007/BF00163849⟩
Journal articles hal-00698137v1

Insect muscle actins differ distinctly from invertebrate and vertebrate cytoplasmic actins

N. Mounier , Manolo Gouy , Dominique Mouchiroud , J.C. Prudhomme
Journal of Molecular Evolution, 1992, 34, pp.406-415. ⟨10.1007/BF00162997⟩
Journal articles hal-00698078v1

Nucleotide sequence of nifD from Frankia alni strain ArI3: phylogenetic inferences

P. Normand , Manolo Gouy , B. Cournoyer , P. Simonet
Molecular Biology and Evolution, 1992, 9 (3), pp.495-506. ⟨10.1093/oxfordjournals.molbev.a040737⟩
Journal articles hal-00698088v1

Statistical tests of molecular phylogenies

W.-H. Li , Manolo Gouy
Methods in Enzymology, 1990, 183, pp.645-659. ⟨10.1016/0076-6879(90)83042-8⟩
Journal articles hal-00698014v1

Molecular phylogeny of Rodentia Lagomorpha Primates Artiodactyla and Carnivora and molecular clocks

W.-H. Li , Manolo Gouy , P.M. Sharp , C. O'Huigin , Y.W. Yang
Proceedings of the National Academy of Sciences of the United States of America, 1990, 87 (17), pp.6703-6707. ⟨10.1073/pnas.87.17.6703⟩
Journal articles hal-00698389v1

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data

K.H. Wolfe , Manolo Gouy , Y.W. Yang , P.M. Sharp , W.-H. Li
Proceedings of the National Academy of Sciences of the United States of America, 1989, 86 (16), pp.6201-6205. ⟨10.1073/pnas.86.16.6201⟩
Journal articles hal-00698329v1

Molecular phylogeny of the kingdoms Animalia Plantae and Fungi

Manolo Gouy , W.-H. Li
Molecular Biology and Evolution, 1989, 6 (2), pp.109-122. ⟨10.1093/oxfordjournals.molbev.a040536⟩
Journal articles hal-00697919v1

Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree

Manolo Gouy , W.-H. Li
Nature, 1989, 339, pp.145-147. ⟨10.1038/339145a0⟩
Journal articles hal-00697921v1

RPA190 the gene coding for the largest subunit of yeast RNA polymerase A

S. Memet , Manolo Gouy , C. Marck , A. Sentenac , J.M. Buhler
Journal of Biological Chemistry, 1988, 263 (6), pp.2830-2839. ⟨10.1016/S0021-9258(18)69144-6⟩
Journal articles hal-00698053v1

Interfacing similarity search software with the sequence retrieval system ACNUC

D.G. Higgins , Manolo Gouy
Bioinformatics, 1987, 3 (3), pp.239-241. ⟨10.1093/bioinformatics/3.3.239⟩
Journal articles hal-00697947v1

Codon contexts in enterobacterial and coliphage genes

Manolo Gouy
Molecular Biology and Evolution, 1987, 4, pp.426-444. ⟨10.1093/oxfordjournals.molbev.a040450⟩
Journal articles hal-00697910v1

Molecular evolution of viruses as seen by nucleic acid sequence study

R. Grantham , T. Greenland , S. Louail , Dominique Mouchiroud , J.-L. Prato
Bulletin de l'Institut Pasteur, 1985, 83, pp.95-148
Journal articles hal-00697914v1

System analysis and nucleic acid sequence banks

Manolo Gouy , Christian Gautier , F. Milleret
Biochimie, 1985, 67 (5), pp.433-436. ⟨10.1016/S0300-9084(85)80260-1⟩
Journal articles hal-00697903v1

ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage

Manolo Gouy , Christian Gautier , M. Attimonelli , C. Lanave , G. Di Paola
Bioinformatics, 1985, 1, pp.167-172. ⟨10.1093/bioinformatics/1.3.167⟩
Journal articles hal-00697905v1

Evolution of the primate beta-globin gene region. High rate of variation in CpG dinucleotides and in short repeated sequences between man and chimpanzee

P. Savatier , G. Trabuchet , C. Faure , Y. Chebloune , Manolo Gouy
Journal of Molecular Biology, 1985, 182 (1), pp.21-29. ⟨10.1016/0022-2836(85)90024-5⟩
Journal articles hal-00698207v1

Non-parametric statistics for nucleic acid sequence study

C. Gautier , Manolo Gouy , S. Louail
Biochimie, 1985, 67 (5), pp.449-453. ⟨10.1016/S0300-9084(85)80263-7⟩
Journal articles hal-02320490v1

Prédiction des structures secondaires dans les acides nucléiques: aspects algorithmiques et physiques

Manolo Gouy , P. Marliere , C. Papanicolaou , J. Ninio
Biochimie, 1985, 67 (5), pp.523-531. ⟨10.1016/S0300-9084(85)80272-8⟩
Journal articles hal-00697912v1

Evolution of the primate β-globin gene region

P. Savatier , G. Trabuchet , C. Faure , Y. Chebloune , M. Gouy
Journal of Molecular Biology, 1985, 182 (1), pp.21-29. ⟨10.1016/0022-2836(85)90024-5⟩
Journal articles hal-02965509v1

ACNUC: a nucleic acid sequence data base and analysis system

Manolo Gouy , F. Milleret , C. Mugnier , M. Jacobzone , Christian Gautier
Nucleic Acids Research, 1984, 12 (1), pp.121-127. ⟨10.1093/nar/12.1Part1.121⟩
Journal articles hal-00697916v1

An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules

C. Papanicolaou , Manolo Gouy , J. Ninio
Nucleic Acids Research, 1984, 12 (1), pp.31-44. ⟨10.1093/nar/12.1Part1.31⟩
Journal articles hal-00698110v1

Codon usage in bacteria: correlation with gene expressivity

Manolo Gouy , Christian Gautier
Nucleic Acids Research, 1982, 10 (22), pp.7055-7074. ⟨10.1093/nar/10.22.7055⟩
Journal articles hal-00697906v1

Codon catalog usage is a genome strategy modulated for gene expressivity

R. Grantham , Christian Gautier , Manolo Gouy , M. Jacobzone , R. Mercier
Nucleic Acids Research, 1981, 9, pp.R43-R74. ⟨10.1093/nar/9.1.213-b⟩
Journal articles hal-00697917v1

Polypeptide elongation and tRNA cycling in Escherichia coli: a dynamic approach

Manolo Gouy , R. Grantham
FEBS Letters, 1980, 115, pp.151-155. ⟨10.1016/0014-5793(80)81155-0⟩
Journal articles hal-00697904v1

Codon catalog usage and the genome hypothesis

R. Grantham , Christian Gautier , Manolo Gouy , R. Mercier , A. Pave
Nucleic Acids Research, 1980, 8 (1), pp.R49-R62. ⟨10.1093/nar/8.1.197-c⟩
Journal articles hal-00697923v1

Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type

R. Grantham , Christian Gautier , Manolo Gouy
Nucleic Acids Research, 1980, 8 (9), pp.1893-1912. ⟨10.1093/nar/8.9.1893⟩
Journal articles hal-00697920v1

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

Manolo Gouy , Eric Tannier , Nicolas Comte , David Parsons
Multiple Sequence Alignment, 2231, Humana, pp.241-260, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1036-7_15⟩
Book sections hal-03065564v1
Image document

Ancestral Reconstruction: Theory and Practice

Mathieu Groussin , Vincent Daubin , Eric Tannier , Manolo Gouy
Richard M. Kliman. Encyclopedia of Evolutionary Biology, Elsevier, pp.70-77, 2016, ⟨10.1016/B978-0-12-800049-6.00166-9⟩
Book sections hal-01334934v1

Pendant trois milliards d'années les micro-organismes sont les seuls habitants de la terre

J.C. Bertrand , Céline Brochier-Armanet , Manolo Gouy , F. Westall
Ecologie microbienne : Microbiologie des milieux naturels et anthropisés, Presses Universitaires de Pau et des Pays de l'Adour, pp.94-U259, 2011, 2-35311-022-3 9782353110223
Book sections hal-00698386v1

Evolution Moléculaire

L. Duret , T. Bataillon , N. Bierne , Vincent Daubin , J. Dutheil
sous la direction de Frédéric Thomas; Thierry Lefèvre; Michel Raymond. Biologie évolutive, De Boeck, pp.114-173, 2010, 978-2-8041-0161-9
Book sections hal-00539271v1

HOVERGEN: comparative analysis of homologous vertebrate genes

L. Duret , G. Perrière , Manolo Gouy
Letovsky S. Bioinformatics: databases and systems, Springer, pp.21-35, 1999, 978-0-7923-8573-8. ⟨10.1007/0-306-46903-0_3⟩
Book sections hal-00428428v1