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Marc Aubry



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Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks

Rose-Marie Fraboulet , Yanis Si Ahmed , Marc Aubry , Sébastien Corre , Marie-Dominique Galibert
BMC Bioinformatics, 2024, 25, pp.53. ⟨10.1186/s12859-024-05668-y⟩
Journal articles hal-04540383v1
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Exploring the IRE1 interactome: from canonical signaling functions to unexpected roles

Simon Le Goupil , Hadrien Laprade , Marc Aubry , Eric Chevet
Journal of Biological Chemistry, 2024, 300 (4), pp.107169. ⟨10.1016/j.jbc.2024.107169⟩
Journal articles hal-04540346v1
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IRE1 endoribonuclease signaling promotes myeloid cell infiltration in glioblastoma

Joanna Obacz , Jérôme Archambeau , Elodie Lafont , Manon Nivet , Sophie Martin
Neuro-Oncology, 2023, Neuro-Oncology, ⟨10.1093/neuonc/noad256⟩
Journal articles hal-04388457v1
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Non-canonical miRNA-RNA base-pairing impedes tumor suppressor activity of miR-16

Anais M. Quemener , Laura Bachelot , Marc Aubry , Stéphane Avner , Delphine Leclerc
Life Science Alliance, 2022, 5 (12), pp.e202201643. ⟨10.26508/lsa.202201643⟩
Journal articles hal-03811856v1
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A Novel Pseudogene Methylation Signature to Predict Temozolomide Outcome in Non-G-CIMP Glioblastomas

Bowen Li , Jiu Wang , Philip L.-F. Liu , Rui Li , Weihong Hu
Journal of Oncology, 2022, 2022, pp.6345160. ⟨10.1155/2022/6345160⟩
Journal articles hal-03756974v1

Integration of Raman spectra with transcriptome data in glioblastoma multiforme defines tumour subtypes and predicts patient outcome

Pierre-Jean Le Reste , Eleftherios Pilalis , Marc Aubry , Mari Mcmahon , Luis Cano
Journal of Cellular and Molecular Medicine, 2021, 25 (23), pp.10846-10856. ⟨10.1111/jcmm.16902⟩
Journal articles hal-03467186v1

Integrative analysis identifies an immune-relevant epigenetic signature for prognostication of non-G-CIMP glioblastomas

Anan Yin , Zhende Shang , Amandine Etcheverry , Yalong He , Marc Aubry
OncoImmunology, 2021, 10 (1), ⟨10.1080/2162402X.2021.1902071⟩
Journal articles hal-03206742v1
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The drivers of vine-plant root microbiota endosphere composition include both abiotic and plant-specific factors

Marine Biget , Cendrine Mony , Marc Aubry , Olivier Jambon , Achim Quaiser
OENO One, 2021, 55 (3), pp.299-315. ⟨10.20870/oeno-one.2021.55.3.4616⟩
Journal articles hal-03413043v1
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CRISPR screens identify tumor-promoting genes conferring melanoma cell plasticity and resistance

Arthur Gautron , Laura Bachelot , Marc Aubry , Delphine Leclerc , Anaïs M Quéméner
EMBO Molecular Medicine, 2021, 13 (5), pp.e13466. ⟨10.15252/emmm.202013466⟩
Journal articles hal-03194524v1
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Cytosine methylation of mature microRNAs inhibits their functions and is associated with poor prognosis in glioblastoma multiforme

Mathilde Cheray , Amandine Etcheverry , Camille Jacques , Romain Pacaud , Gwenola Bougras-Cartron
Molecular Cancer, 2020, 19 (1), pp.1-36. ⟨10.1186/s12943-020-01155-z⟩
Journal articles hal-02500622v1
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EZH2 and KDM6B Expressions Are Associated with Specific Epigenetic Signatures during EMT in Non Small Cell Lung Carcinomas

Camille Lachat , Diane Bruyère , Amandine Etcheverry , Marc Aubry , Jean Mosser
Cancers, 2020, 12 (12), ⟨10.3390/cancers12123649⟩
Journal articles hal-03099270v1
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Transcriptomics in cancer revealed by Positron Emission Tomography radiomics

Florent Tixier , Catherine Cheze-Le-Rest , Ulrike Schick , Brigitte Simon , Xavier Dufour
Scientific Reports, 2020, 10 (1), pp.5660. ⟨10.1038/s41598-020-62414-z⟩
Journal articles inserm-02541913v1
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Local intracerebral inhibition of IRE1 by MKC8866 sensitizes glioblastoma to irradiation/chemotherapy in vivo

Pierre Jean Le Reste , R Pineau , Konstantinos Voutetakis , J Samal , Gwenaele Jegou
Cancer Letters, 2020, 494, pp.73-83. ⟨10.1016/j.canlet.2020.08.028⟩
Journal articles hal-02959985v1
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A five-CpG signature of microRNA methylation in non-G-CIMP glioblastoma

En-Ming Kang , An-An Yin , Ya-Long He , Wei-Jun Chen , Amandine Etcheverry
CNS Neuroscience and Therapeutics, 2019, 25 (9), pp.937-950. ⟨10.1111/cns.13133⟩
Journal articles hal-02121050v1
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Novel predictive epigenetic signature for temozolomide in non-G-CIMP glioblastomas

An-An Yin , Ya-Long He , Amandine Etcheverry , Yu-He Liu , Marc Aubry
Clinical Epigenetics, 2019, 11 (1), pp.76. ⟨10.1186/s13148-019-0670-9⟩
Journal articles hal-02153239v1
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EMT is associated with an epigenetic signature of ECM remodeling genes

Paul Peixoto , Amandine Etcheverry , Marc Aubry , Anaïs Missey , Camille Lachat
Cell Death and Disease, 2019, 10 (3), pp.205. ⟨10.1038/s41419-019-1397-4⟩
Journal articles hal-02076497v1
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Rapid genetic and phenotypic changes in Pseudomonas aeruginosa clinical strains during ventilator-associated pneumonia

Elise Persyn , Mohamed Sassi , Marc Aubry , Martin Broly , Sandie Delanou
Scientific Reports, 2019, 9 (1), pp.4720. ⟨10.1038/s41598-019-41201-5⟩
Journal articles hal-02086609v1
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Amustaline (S-303) treatment inactivates high levels of Chikungunya virus in red-blood-cell components

Marc Aubry , A. Laughhunn , F. Santa Maria , M. C. Lanteri , A. Stassinopoulos
Vox Sanguinis, 2018, 113 (3), pp.232-241. ⟨10.1111/vox.12626⟩
Journal articles hal-01789241v1
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A novel prognostic six-CpG signature in glioblastomas

An-An Yin , Nan Lu , Amandine Etcheverry , Marc Aubry , Jill Barnholtz-Sloan
CNS Neuroscience and Therapeutics, 2018, 24 (3), pp.167-177. ⟨10.1111/cns.12786⟩
Journal articles hal-01711026v1
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Integration of transcriptome and proteome profiles in glioblastoma looking for the missing link

Jean-Michel Lemée , Anne Clavreul , Marc Aubry , Emmanuelle Com , Marie de Tayrac
BMC Molecular Biology, 2018, 19 (1), pp.13. ⟨10.1186/s12867-018-0115-6⟩
Journal articles hal-01940252v1
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The expression of EMX2 lead to cell cycle arrest in glioblastoma cell line

Annabelle Monnier , Rachel Boniface , Régis Bouvet , Amandine Etcheverry , Marc Aubry
BMC Cancer, 2018, 18 (1), pp.1213. ⟨10.1186/s12885-018-5094-y⟩
Journal articles hal-01972440v1
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Integrative analysis of novel hypomethylation and gene expression signatures in glioblastomas

A. Yin , A. Etcheverry , Y. He , Marc Aubry , J. Barnholtz-Sloan
Oncotarget, 2017, 8 (52), pp.89607-89619. ⟨10.18632/oncotarget.19171⟩
Journal articles hal-01647188v1
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Impact of the French 3rd and 4th generation pill scare in women seeking termination of pregnancy

Ophélie Caillot , Marc Aubry , Solène Duros , Laurence Boyer , Claude van Valenberg
Journal de Gynécologie Obstétrique et Biologie de la Reproduction, 2017, 46 (1), pp.69-76. ⟨10.1016/j.jgyn.2016.03.014⟩
Journal articles hal-01308004v1
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MiR-422a promotes loco-regional recurrence by targeting NT5E/CD73 in head and neck squamous cell carcinoma

Nathalie Bonnin , Emma Armandy , Julien Carras , Sylvain Ferrandon , Priscillia Battiston-Montagne
Oncotarget, 2016, 7 (28), pp.44023-44038. ⟨10.18632/oncotarget.9829⟩
Journal articles hal-01376219v1
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Characterizing the peritumoral brain zone in glioblastoma: a multidisciplinary analysis.

Jean-Michel Lemée , Anne Clavreul , Marc Aubry , Emmanuelle Com , Marie de Tayrac
Journal of Neuro-Oncology, 2015, 122 (1), pp.53-61. ⟨10.1007/s11060-014-1695-8⟩
Journal articles hal-01117083v1

From the core to beyond the margin: a genomic picture of glioblastoma intratumor heterogeneity

Marc Aubry , Marie de Tayrac , Amandine Etcheverry , Anne Clavreul , Stéphan Saikali
Oncotarget, 2015, 6 (14), pp.12094-12109. ⟨10.18632/oncotarget.3297⟩
Journal articles hal-01396745v1
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Transcriptomic analysis of untreated and drug-treated differentiated HepaRG cells over a 2-week period.

Camille C Savary , Xiaoqi Jiang , Marc Aubry , Rozenn Jossé , Annette Kopp-Schneider
Toxicology in Vitro, 2015, 30 (1), pp.27-35. ⟨10.1016/j.tiv.2014.12.019⟩
Journal articles hal-01128182v1
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DGKI Methylation Status Modulates the Prognostic Value of MGMT in Glioblastoma Patients Treated with Combined Radio-Chemotherapy with Temozolomide

Amandine Etcheverry , Marc Aubry , Ahmed Idbaih , Elodie Vauleon , Yannick Marie
PLoS ONE, 2014, 9 (9), pp.e104455. ⟨10.1371/journal.pone.0104455⟩
Journal articles hal-01358132v1

Transcriptome analysis reveals the contribution of thermal and the specific effects in cellular repsonse to millimeter wave exposure

Denis Habauzit , Catherine Le Quement , Maxim Zhadobov , C Martin , Marc Aubry
PLoS ONE, 2014, 9, 10
Journal articles hal-01114575v1

Proteomic analysis underlines the usefulness of both primary adherent and stem-like cell lines for studying proteins involved in human glioblastoma

Brigitte Collet , Tony Avril , Marc Aubry , Abderrahmane Hamlat , Pierre-Jean Le Reste
Journal of Proteomics, 2014, 110C, pp.7--19. ⟨10.1016/j.jprot.2014.07.022⟩
Journal articles hal-01063975v1
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A gene expression and pre-mRNA splicing signature that marks the adenoma-adenocarcinoma progression in colorectal cancer.

Marine Pesson , Alain Volant , Arnaud Uguen , Kilian Trillet , Pierre de La Grange
PLoS ONE, 2014, 9 (2), pp.e87761. ⟨10.1371/journal.pone.0087761⟩
Journal articles hal-00976068v1
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Prognostic Significance of EDN/RB, HJURP, p60/CAF-1 and PDLI4, Four New Markers in High-Grade Gliomas.

Marie de Tayrac , Stephan Saikali , Marc Aubry , Pascale Bellaud , Rachel Boniface
PLoS ONE, 2013, 8 (9), pp.e73332. ⟨10.1371/journal.pone.0073332⟩
Journal articles hal-00876093v1

Transcriptome analysis reveals the contribution of thermal and the specific effects in cellular response to millimeter wave exposure.

Denis Habauzit , Catherine Le Quément , Maxim Zhadobov , Catherine Martin , Marc Aubry
PLoS ONE, 2013, 9 (10), pp.e109435. ⟨10.1371/journal.pone.0109435⟩
Journal articles hal-01118066v1

Whole-genome expression analysis in primary human keratinocyte cell cultures exposed to 60 GHz radiation.

Catherine Le Quément , Christophe Nicolas Nicolaz , Maxim Zhadobov , Fabienne Desmots , Ronan Sauleau
Bioelectromagnetics, 2012, 33 (2), pp.147-158. ⟨10.1002/bem.20693⟩
Journal articles inserm-00699884v1

Immune genes are associated with human glioblastoma pathology and patient survival

Elodie Vauleon , Avril Tony , Abderrahmane Hamlat , Amandine Etcheverry , Dan Cristian Chiforeanu
BMC Medical Genomics, 2012, 5 (1), pp.41. ⟨10.1186/1755-8794-5-41⟩
Journal articles hal-01064487v1

Iron excess limits HHIPL-2 gene expression and decreases osteoblastic activity in human MG-63 cells.

Mathilde Doyard , Nadia Fatih , Annabelle Monnier , Marie-Laure Island , Marc Aubry
Osteoporosis International, 2012, 23 (10), pp.2435-2445. ⟨10.1007/s00198-011-1871-z⟩
Journal articles inserm-00662108v1

A 4-gene signature associated with clinical outcome in high-grade gliomas.

Marie de Tayrac , Marc Aubry , Stephan Saïkali , Amandine Etcheverry , Cyrille Surbled
Clinical Cancer Research, 2011, 17 (2), pp.317-27. ⟨10.1158/1078-0432.CCR-10-1126⟩
Journal articles inserm-00545436v1

CD9 expression can be used to predict childhood TEL/AML1-positive acute lymphoblastic leukemia: proposal for an accelerated diagnostic flowchart.

Virginie Gandemer , Marc Aubry , Mikael Roussel , Anne-Gaelle Rio , Marie de Tayrac
Leukemia Research, 2010, 34 (4), pp.430-7. ⟨10.1016/j.leukres.2009.09.033⟩
Journal articles inserm-00435146v1
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DNA methylation in glioblastoma: impact on gene expression and clinical outcome.

Amandine Etcheverry , Marc Aubry , Marie de Tayrac , Elodie Vauleon , Rachel Boniface
BMC Genomics, 2010, 11 (1), pp.701. ⟨10.1186/1471-2164-11-701⟩
Journal articles inserm-00663706v1
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Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression.

Marie de Tayrac , Amandine Etcheverry , Marc Aubry , Stephan Saïkali , Abderrahmane Hamlat
Genes, Chromosomes & Cancer, 2009, 48 (1), pp.55-68. ⟨10.1002/gcc.20618⟩
Journal articles inserm-00352960v1
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Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach.

Marie de Tayrac , Sébastien Lê , Marc Aubry , Jean Mosser , François Husson
BMC Genomics, 2009, 10, pp.32. ⟨10.1186/1471-2164-10-32⟩
Journal articles inserm-00365978v1
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Iron-related transcriptomic variations in Caco-2 cells: in silico perspectives.

Marc Aubry , Annabelle Monnier , Céline Chicault , Marie-Dominique Galibert , Anita Burgun
Biochimie, 2008, 90 (4), pp.669-78. ⟨10.1016/j.biochi.2008.01.002⟩
Journal articles hal-00235440v1
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Transcriptome profiling of the feeding-to-fasting transition in chicken liver.

Colette Désert , Michel Jacques M.J. Duclos , Pierre Blavy , Frédéric Lecerf , François Moreews
BMC Genomics, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩
Journal articles hal-00729919v1

Iron-related transcriptomic variations in CaCo-2 cells, an in vitro model of intestinal absorptive cells.

Céline Chicault , Bertrand Toutain , Annabelle Monnier , Marc Aubry , Patricia Fergelot
Physiological Genomics, 2006, 26(1), pp.55-67. ⟨10.1152/physiolgenomics.00297.2005⟩
Journal articles hal-00090513v1

Differential expression of genes related to HFE and iron status in mouse duodenal epithelium.

Emmanuelle Abgueguen , Bertrand Toutain , Hélène Bédrine , Céline Chicault , Magali Orhant
Mammalian Genome, 2006, 17, pp.430-450. ⟨10.1007/s00335-005-0122-z⟩
Journal articles hal-00085719v1

A new alpha chain hemoglobin variant: Hb Al-Hammadi Riyadh [alpha75(EF4)Asp-->Val (alpha2)].

N. Burnichon , P. Lacan , M. Becchi , I. Zanella-Cleon , Marc Aubry
Hemoglobin, 2006, 30, pp.155-164
Journal articles hal-00313098v1
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Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

Marc Aubry , Annabelle Monnier , Céline Chicault , Marie de Tayrac , Marie-Dominique Galibert
BMC Bioinformatics, 2006, 7, pp.241. ⟨10.1186/1471-2105-7-241⟩
Journal articles hal-00094484v1

A new G(gamma) chain variant: Hb F-Bron [gamma20(B2)val-->Ala].

P. Lacan , N. Burnichon , M. Becchi , I. Zanella-Cleon , Marc Aubry
Hemoglobin, 2005, 29, pp.301-305
Journal articles hal-00314096v1

Two new hemoglobin variants: Hb Brem-sur-Mer [beta9(A6)Ser-->Tyr] and Hb Passy [alpha81(F2)Ser-->Pro (alpha2)].

P. Lacan , M. Moreau , M. Becchi , I. Zanella-Cleon , Marc Aubry
Hemoglobin, 2005, 29, pp.69-75
Journal articles hal-00314098v1

Identification by mass spectrometry of a hemoglobin variant with an elongated beta-globin chain.

P. Lacan , M. Becchi , I. Zanella-Cleon , Marc Aubry , D. Quinsat
Clin Chem, 2005, 51, pp.213-215
Journal articles hal-00313099v1

Two new beta-chain variants: Hb Tripoli [beta26(B8)Glu-->Ala] and Hb Tizi-Ouzou [beta29(B11)Gly-->Ser].

P. Lacan , M. Becchi , I. Zanella-Cleon , Marc Aubry , M. Ffrench
Hemoglobin, 2004, 28, pp.205-212
Journal articles hal-00314099v1

Two new alpha chain variants: Hb Part-Dieu [alpha65(E14)Ala --> Thr (alpha2)] and Hb Decines-Charpieu [alpha69(E18)Ala --> Thr (alpha2)].

P. Lacan , M. Becchi , I. Zanella-Cleon , Marc Aubry , P. Renaudier
Hemoglobin, 2004, 28, pp.51-57
Journal articles hal-00313100v1

Characterization of Hb Djelfa [beta98(FG5)Val-->Ala]] by DNA sequencing in a French Caucasian family.

P. Lacan , Marc Aubry , A. Francina , N. Couprie , L. Dementhon
Hemoglobin, 1999, 23, pp.73-77
Journal articles hal-00313102v1

Two new alpha chain variants: Hb Boghe [alpha58(E7)His-->Gln, alpha2], a variant on the distal histidine, and Hb CHarolles [alpha103(G10)His-Tyr, alpha1].

P. Lacan , A. Francina , G. Souillet , Marc Aubry , N. Couprie
Hemoglobin, 1999, 23, pp.345-352
Journal articles hal-00314105v1
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Devenir digestif de la viciline et de la lectine radiomarquées du pois (Pisum sativum) chez le rats

Marc Aubry , P. Boucrot
Reproduction Nutrition Développement, 1985, 25 (4B), pp.844-844
Journal articles hal-00898343v1
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Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks

Rose-Marie Fraboulet , Yanis Si Ahmed , Marc Aubry , Sébastien Corre , Marie-Dominique Galibert
Conference papers hal-04286509v1

A Four-Gene Signature Associated with Clinical Outcome in High-Grade Gliomas.

Marc Aubry , Marie de Tayrac , Stephan Saïkali , Amandine Etcheverry , Abderrahmane Hamlat
9th Meeting of The European Association of NeuroOncology, Sep 2010, Maastricht, Netherlands. pp.iii5 O.16, ⟨10.1093/neuonc/noq085⟩
Conference papers inserm-00550559v1

Gene Expression Meta-Analysis Identifies Grading and Survival Markers in Anaplastic Glioma.

Marie de Tayrac , Marc Aubry , Stephan Saikali , Cyrille Surbled , Rachel Boniface
3rd Quadrennial Meeting of the World-Federation-of-Neuro-Oncoloyg/6th Meeting of the Asian-Society-for-Neuro-Oncology, Apr 2009, Yokohama, Japan. pp.925 P47
Conference papers inserm-00550572v1

Integration of Genomic Alterations and Expression Profiling in Glioblastoma Multiforme.

Jean Mosser , Amandine Etcheverry , Stephan Saikali , Marc Aubry , Abderrahmane Hamlat
3rd Quadrennial Meeting of the World-Federation-of-Neuro-Oncoloyg/6th Meeting of the Asian-Society-for-Neuro-Oncology, Apr 2009, Yokohama, Japan. pp.890 O59
Conference papers inserm-00550564v1

Contribution To The Annotations Of The Chicken 20K Oligo Microarray Of ARK-Genomics

Christophe C. Klopp , François Moreews , Marc Aubry , Sandrine Lagarrigue
International Plant & Animal Genomes XVI Conference, Jan 2008, San Diego, United States
Conference papers inria-00329915v1

Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides

Marc Aubry , Colette Désert , P. Blavy , Frédéric Lecerf , Michel Jacques M.J. Duclos
Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France
Conference papers hal-00729786v1

Contribution to the annotation of the chicken 20K oligo microarray of ARK-genomics

C. Klopp , François Moreews , Marc Aubry , Sandrine Lagarrigue
Plant & Animal Genomes, XVI Conference, Jan 2008, San Diego (US), United States
Conference papers hal-00729110v1

From the core to beyong the margin : Les faces cachées de la zone péritumorale

Anne Clavreul , Jean-Michel Lemée , Amandine Etcheverry , Emmanuelle Com , Catherine Guette
8èmes journées du Cancéropôle Grand Ouest, 2014, Les Sables d'Olonne, France. 2014
Conference poster hal-03180639v1

Caractérisation du profil multimodal de la zone péritumorale des glioblastomes

Jean-Michel Lemée , Anne Clavreul , Marc Aubry , Emmanuelle Com , Marie de Tayrac
8èmes journées du Cancéropôle Grand Ouest, 2014, Les Sables d'Olonne, France. 2014
Conference poster hal-03184057v1