Marco Di Stefano Chargé de recherche (CR)

Identifiants chercheurs

IdHAL :

marco-di-stefano

ORCID :

0000-0001-6195-4754

Publications

Article dans une revue (15)

Transient histone deacetylase inhibition induces cellular memory of gene expression and 3D genome folding Flora Paldi,Michael-Florian Szalay,Solène Dufau,Marco Di Stefano,Hadrien Reboulet al. Nature Genetics, 2026, 58 (2), pp.404-417. ⟨10.1038/s41588-025-02489-4⟩ Article dans une revue hal-05569730v1
Determining the functional relationship between epigenetic and physical chromatin domains in Drosophila Sandrine Denaud,Gonzalo Sabarís,Marco Di Stefano,Giorgio-Lucio Papadopoulos,Bernd Schuettengruberet al. Genome Biology, 2025, 26 (1), pp.116. ⟨10.1186/s13059-025-03587-6⟩ Article dans une revue hal-05313571v1
A PRE loop at the dac locus acts as a topological chromatin structure that restricts and specifies enhancer–promoter communication Sandrine Denaud,Marion Bardou,Giorgio-Lucio Papadopoulos,Stefan Grob,Marco Di Stefanoet al. Nature Structural and Molecular Biology, 2024, ⟨10.1038/s41594-024-01375-7⟩ Article dans une revue hal-04762614v1
Transient loss of Polycomb components induces an epigenetic cancer fate Victoria Parreno,Vincent Loubiere,Bernd Schuettengruber,Lauriane Fritsch,Chetan C. Rawalet al. Nature, 2024, 629 (8012), pp.688-696. ⟨10.1038/s41586-024-07328-w⟩ Article dans une revue hal-04581411v1
Topology in soft and biological matter Luca Tubiana,Gareth P Alexander,Agnese Barbensi,Dorothy Buck,Julyan H.E Cartwrightet al. Physics Reports, 2024, 1075, pp.1-137. ⟨10.1016/j.physrep.2024.04.002⟩ Article dans une revue hal-04577297v1
3DGenBench: a web-server to benchmark computational models for 3D Genomics Polina Belokopytova,Emil Viesná,Mateusz Chiliński,Yifeng Qi,Hossein Salariet al. Nucleic Acids Research, 2022, 50 (W1), pp.W4-W12. ⟨10.1093/nar/gkac396⟩ Article dans une revue hal-04190582v1
Integrative studies of 3D genome organization and chromatin structure Marco Di Stefano,Giacomo Cavalli Current Opinion in Structural Biology, 2022, 77, pp.102493. ⟨10.1016/j.sbi.2022.102493⟩ Article dans une revue hal-04114081v1
4D nucleome modeling Marco Di Stefano,Jonas Paulsen,Daniel Jost,Marc A Marti-Renom Current Opinion in Genetics and Development, 2021, 67, pp.25-32. ⟨10.1016/j.gde.2020.10.004⟩ Article dans une revue hal-03431655v1
Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana Marco Di stefano,Hans-Wilhelm Nützmann,Marc a Marti-Renom,Daniel Jost Nucleic Acids Research, 2021, 49 (4), pp.1840-1858. ⟨10.1093/nar/gkaa1275⟩ Article dans une revue hal-03431627v1
Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid- or gel-like behavior of chromatin Hossein Salari,Marco Di Stefano,Daniel Jost Genome Research, 2021, 32, pp.28-43. ⟨10.1101/gr.275827.121⟩ Article dans une revue hal-03431645v1
Modeling the 3D genome of plants Marco Di Stefano,Hans-Wilhelm Nützmann Nucleus, 2021, 12 (1), pp.65-81. ⟨10.1080/19491034.2021.1927503⟩ Article dans une revue (article de synthèse) hal-05524809v1
Three-dimensional genome organization via triplex-forming RNAs Irene Farabella,Marco Di Stefano,Paula Soler-Vila,Maria Marti-Marimon,Marc Marti-Renom Nature Structural and Molecular Biology, 2021, 28 (11), pp.945-954. ⟨10.1038/s41594-021-00678-3⟩ Article dans une revue hal-05524060v1
Impact of Chromosome Fusions on 3D Genome Organization and Gene Expression in Budding Yeast Marco Di Stefano,Francesca Di Giovanni,Vasilisa Pozharskaia,Mercè Gomar-Alba,Davide Baùet al. Genetics, 2020, 214 (3), pp.651-667. ⟨10.1534/genetics.119.302978⟩ Article dans une revue hal-03420822v1
Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions Diego Cattoni,Andrés M Cardozo Gizzi,Mariya Georgieva,Marco Di Stefano,Alessandro Valeriet al. Nature Communications, 2017, 8 (1), pp.1753. ⟨10.1038/s41467-017-01962-x⟩ Article dans une revue hal-01652403v1
Absence of knots in known RNA structures Cristian Micheletti,Marco Di Stefano,Henri Orland Proceedings of the National Academy of Sciences of the United States of America, 2015, 112 (7), pp.2052-2057. ⟨10.1073/pnas.1418445112⟩ Article dans une revue cea-02926930v1

Pré-publication, Document de travail (5)

Looping specificity of Polycomb response elements requires GAF and a combinatorial code of looping factors Gonzalo Sabarís,Marco Di Stefano,Sandrine Denaud,Lauriane Fritsch,Ana-Maria Popmihaylovaet al. 2025 Pré-publication, Document de travail hal-05409419v1
Transient histone deacetylase inhibition induces cellular memory of gene expression and three-dimensional genome folding Flora Paldi,Michael Szalay,Marco Di Stefano,Daniel Jost,Hadrien Reboulet al. 2025 Pré-publication, Document de travail hal-04908225v1
A Scaffolding Element Rewires Local 3D Chromatin Architecture During Differentiation Ivana Jerković,Marco Di Stefano,Hadrien Reboul,Michael Szalay,Davide Normannoet al. 2024 Pré-publication, Document de travail hal-04737504v1
The unknotted strands of life: knots are very rare in RNA structures Cristian Micheletti,Marco Di Stefano,Henri Orland 2023 Pré-publication, Document de travail cea-01234151v1
Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana Marco Di Stefano,Hans-Wilhelm Nutzmann,Marc A Marti-Renom,Daniel Jost 2020 Pré-publication, Document de travail hal-03012893v1