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Assessing the polymer coil-globule state from the very first spectral modes

Timothy Foldes , Antony Lesage , Maria Barbi
Physical Review Letters, 2021, ⟨10.1103/PhysRevLett.127.277801⟩
Journal articles hal-03466632v1
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Polymer coil–globule phase transition is a universal folding principle of Drosophila epigenetic domains

Antony Lesage , Vincent Dahirel , Jean-Marc Victor , Maria Barbi
Epigenetics & Chromatin, 2019, 12 (1), ⟨10.1186/s13072-019-0269-6⟩
Journal articles hal-02147100v1

Chromosomes : étonnants polymères !

Maria Barbi , Annick Lesne , Julien Mozziconacci , Jean Marc Victor
Reflets de la Physique, 2018, 57, pp.10-15. ⟨10.1051/refdp/201857010⟩
Journal articles hal-03518411v1

The physics of epigenetics

Ruggero Cortini , Maria Barbi , Bertrand Caré , Christophe Lavelle , Annick Lesne et al.
Reviews of Modern Physics, 2016, 88 (2), ⟨10.1103/RevModPhys.88.025002⟩
Journal articles hal-03510200v1

Theory and simulations of toroidal and rod-like structures in single-molecule DNA condensation

Ruggero Cortini , Bertrand Caré , Jean-Marc Victor , Maria Barbi
Journal of Chemical Physics, 2015, 142 (10), pp.105102. ⟨10.1063/1.4914513⟩
Journal articles hal-03510145v1
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Enseigner la physique à l’université. Colloque régional, 6-7 juillet 2015 – Paris

Maria Barbi , Guillaume Blanc , Florence Elias , Sylvain Fautrat , C. de Hosson et al.
Reflets de la Physique, 2015
Journal articles hal-01663268v1

DNA topology in chromosomes: a quantitative survey and its physiological implications

Maria Barbi , Julien Mozziconacci , Hua Wong , Jean-Marc Victor
Journal of Mathematical Biology, 2014, 68 (1-2), pp.145-179. ⟨10.1007/s00285-012-0621-y⟩
Journal articles hal-03510117v1
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In Silico Single-Molecule Manipulation of DNA with Rigid Body Dynamics

Pascal Carrivain , Maria Barbi , Jean-Marc Victor
PLoS Computational Biology, 2014, 10 (2), ⟨10.1371/journal.pcbi.1003456⟩
Journal articles hal-01342589v1

Pulling chromatin apart: Unstacking or Unwrapping?

Jean Marc Victor , Jordanka Zlatanova , Maria Barbi , Julien Mozziconacci
BMC Biophysics, 2012, 5 (1), ⟨10.1186/2046-1682-5-21⟩
Journal articles hal-03510102v1

On the topology of chromatin fibres

Maria Barbi , Julien Mozziconacci , Jean-Marc Victor , Hua Wong , Christophe Lavelle et al.
Interface Focus, 2012, 2 (5), pp.546-554. ⟨10.1098/rsfs.2011.0101⟩
Journal articles hal-03510056v1

Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective

Pascal Carrivain , Axel Cournac , Christophe Lavelle , Annick Lesne , Julien Mozziconacci et al.
Soft Matter, 2012, 8 (36), pp.9285. ⟨10.1039/C2SM25789K⟩
Journal articles hal-03510086v1

Effective interaction between charged nanoparticles and DNA

Fabien Paillusson , Vincent Dahirel , Marie Jardat , Jean-Marc Victor , Maria Barbi et al.
Physical Chemistry Chemical Physics, 2011, 13 (27), pp.12603. ⟨10.1039/c1cp20324j⟩
Journal articles hal-03510036v1
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Chromatin topological transitions

Christophe Lavelle , Aurélien Bancaud , Pierre Recouvreux , Maria Barbi , Jean-Marc Victor et al.
Progress of Theoretical Physics Supplement, 2011, 191, pp.30-39
Journal articles hal-01053106v1

Linker histones incorporation maintains chromatin fiber plasticity.

Pierre Recouvreux , Christophe Lavelle , Maria Barbi , Natalia Conde E Silva , Eric Le Cam et al.
Biophysical Journal, 2011, 100 (11), pp.2726-35. ⟨10.1016/j.bpj.2011.03.064⟩
Journal articles hal-00625637v1

Transcription within Condensed Chromatin: Steric Hindrance Facilitates Elongation

Christophe Bécavin , Maria Barbi , Jean-Marc Victor , Annick Lesne
Biophysical Journal, 2010, 98 (5), pp.824-833. ⟨10.1016/j.bpj.2009.10.054⟩
Journal articles hal-03510014v1
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Poisson-Boltzmann for oppositely charged bodies: an explicit derivation

Jean-Marc Victor , Maria Barbi , Fabien Paillusson
Molecular Physics, 2009, 107 (13), pp.1379-1391. ⟨10.1080/00268970902893156⟩
Journal articles hal-00513286v1

Nonspecific DNA-Protein Interaction: Why Proteins Can Diffuse along DNA

Vincent Dahirel , Fabien Paillusson , Marie Jardat , Maria Barbi , Jean-Marc Victor et al.
Physical Review Letters, 2009, 102 (22), ⟨10.1103/PhysRevLett.102.228101⟩
Journal articles hal-03509993v1

Nucleosome chiral transition under positive torsional stress in single chromatin fibers.

Aurélien Bancaud , Gaudeline Wagner , Natalia Conde E Silva , Christophe Lavelle , Hua Wong et al.
Molecular Cell, 2007, 27 (1), pp.135-47. ⟨10.1016/j.molcel.2007.05.037⟩
Journal articles hal-00181873v1

A physical model for the condensation and decondensation of eukaryotic chromosomes

Julien Mozziconacci , Christophe Lavelle , Maria Barbi , Annick Lesne , Jean-Marc Victor et al.
FEBS Letters, 2006, 580 (2), pp.368-372. ⟨10.1016/j.febslet.2005.12.053⟩
Journal articles hal-03509975v1

Structural plasticity of single chromatin fibers revealed by torsional manipulation.

Aurélien Bancaud , Natalia Conde E Silva , Maria Barbi , Gaudeline Wagner , Jean-François Allemand et al.
Nature Structural and Molecular Biology, 2006, 13, pp.444-450. ⟨10.1038/nsmb1087⟩
Journal articles hal-00090147v1

How does the chromatin fiber deal with topological constraints?

Maria Barbi , Julien Mozziconacci , Jean-Marc Victor
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2005, 71, pp.031910. ⟨10.1103/PhysRevE.71.031910⟩
Journal articles hal-00012986v1

Base-sequence-dependent sliding of proteins on DNA

Maria Barbi , Christophe Place , Vladislav Popkov , Mario Salerno
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2004, 70, pp.041901
Journal articles hal-00003424v1

A Model of Sequence Dependent Protein Diffusion Along Dna

Maria Barbi , Christophe Place , Vladislav Popkov , Mario Salerno
Journal of Biological Physics, 2004, 30,no.3, pp.203-226. ⟨10.1023/B:JOBP.0000046728.51620.14⟩
Journal articles hal-00012987v1

Thermal denaturation of a helicoidal DNA model

Maria Barbi , Stefano Lepri , Michel Peyrard , Nikos Theodorakopoulos
Physical Review E , 2003, 68 (6), ⟨10.1103/PhysRevE.68.061909⟩
Journal articles hal-03509963v1

Stabilization of ratchet dynamics by weak periodic signals

Maria Barbi , Mario Salerno
Physical Review E , 2001, 63 (6), ⟨10.1103/PhysRevE.63.066212⟩
Journal articles hal-03509953v1

Phase locking effect and current reversals in deterministic underdamped ratchets

Maria Barbi , Mario Salerno
Physical Review E , 2000, 62 (2), pp.1988-1994. ⟨10.1103/PhysRevE.62.1988⟩
Journal articles hal-03509593v1

Vector nonlinear Klein-Gordon lattices: General derivation of small amplitude envelope soliton solutions

Simona Cocco , Maria Barbi , Michel Peyrard
Physics Letters A, 1999, 253 (3-4), pp.161-167. ⟨10.1016/S0375-9601(99)00058-4⟩
Journal articles hal-03509237v1

A Twist Opening Model for DNA

Maria Barbi , Simona Cocco , Michel Peyrard , Stefano Ruffo
Journal of Biological Physics, 1999, 24 (2/4), pp.97-114. ⟨10.1023/A:1005139326775⟩
Journal articles hal-03509228v1

Dynamical model for DNA sequences

P. Allegrini , Maria Barbi , P. Grigolini , B. West
Physical Review E , 1995, 52 (5), pp.5281-5296. ⟨10.1103/PhysRevE.52.5281⟩
Journal articles hal-03509184v1


Maria Barbi , R. Cortini , P. Carrivain
International Symposium on Mathematical and Computational Biology, 2014, Poznan, France. pp.245-261, ⟨10.1142/9789814667944_0016⟩
Conference papers hal-03518414v1

The Role of Supercoiling in the Motor Activity of RNA Polymerases

Annick C Lesne , Jean-Marc Victor , Edouard Bertrand , Eugenia Basyuk , Maria Barbi et al.
Methods in Molecular Biology, pp.215-232, 2018, ⟨10.1007/978-1-4939-8556-2_11⟩
Book sections hal-02343520v1

Protein–DNA Electrostatics

Maria Barbi , Fabien Paillusson
Dynamics of Proteins and Nucleic Acids, 92, Elsevier, pp.253-297, 2013, Advances in Protein Chemistry and Structural Biology, ⟨10.1016/B978-0-12-411636-8.00007-9⟩
Book sections hal-03518417v1


Maria Barbi , F. Paillusson
Symmetries and Groups in Contemporary Physics, WORLD SCIENTIFIC, pp.231-236, 2013, ⟨10.1142/9789814518550_0028⟩
Book sections hal-03518420v1