maria barbi

Publications

Article dans une revue (30)

Spectral-based detection of chromatin loops in multiplexed super-resolution FISH data Michaël Liefsoens,Timothy Földes,Maria Barbi Nature Communications, 2024, 15 (7670), https://doi.org/10.1038/s41467-024-51650-w. ⟨10.1038/s41467-024-51650-w⟩ Article dans une revue hal-04595813v2
Assessing the polymer coil-globule state from the very first spectral modes Timothy Foldes,Antony Lesage,Maria Barbi Physical Review Letters, 2021, ⟨10.1103/PhysRevLett.127.277801⟩ Article dans une revue hal-03466632v1
Polymer coil–globule phase transition is a universal folding principle of Drosophila epigenetic domains Antony Lesage,Vincent Dahirel,Jean-Marc Victor,Maria Barbi Epigenetics & Chromatin, 2019, 12 (1), ⟨10.1186/s13072-019-0269-6⟩ Article dans une revue hal-02147100v1
Chromosomes : étonnants polymères ! Maria Barbi,Annick Lesne,Julien Mozziconacci,Jean-Marc Victor Reflets de la Physique, 2018, 57, pp.10-15. ⟨10.1051/refdp/201857010⟩ Article dans une revue hal-03518411v1
The physics of epigenetics Ruggero Cortini,Maria Barbi,Bertrand Caré,Christophe Lavelle,Annick Lesneet al. Reviews of Modern Physics, 2016, 88 (2), ⟨10.1103/RevModPhys.88.025002⟩ Article dans une revue hal-03510200v1
Theory and simulations of toroidal and rod-like structures in single-molecule DNA condensation Ruggero Cortini,Bertrand Caré,Jean-Marc Victor,Maria Barbi The Journal of Chemical Physics, 2015, 142 (10), pp.105102. ⟨10.1063/1.4914513⟩ Article dans une revue hal-03510145v1
Enseigner la physique à l’université. Colloque régional, 6-7 juillet 2015 – Paris Maria Barbi,Guillaume Blanc,Florence Elias,Sylvain Fautrat,C. de Hossonet al. Reflets de la Physique, 2015 Article dans une revue hal-01663268v1
In Silico Single-Molecule Manipulation of DNA with Rigid Body Dynamics Pascal Carrivain,Maria Barbi,Jean-Marc Victor PLoS Computational Biology, 2014, 10 (2), ⟨10.1371/journal.pcbi.1003456⟩ Article dans une revue hal-01342589v1
DNA topology in chromosomes: a quantitative survey and its physiological implications Maria Barbi,Julien Mozziconacci,Hua Wong,Jean-Marc Victor Journal of Mathematical Biology, 2014, 68 (1-2), pp.145-179. ⟨10.1007/s00285-012-0621-y⟩ Article dans une revue hal-03510117v1
Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective Pascal Carrivain,Axel Cournac,Christophe Lavelle,Annick Lesne,Julien Mozziconacciet al. Soft Matter, 2012, 8 (36), pp.9285. ⟨10.1039/C2SM25789K⟩ Article dans une revue hal-03510086v1
Pulling chromatin apart: Unstacking or Unwrapping? Jean-Marc Victor,Jordanka Zlatanova,Maria Barbi,Julien Mozziconacci BMC Biophysics, 2012, 5 (1), ⟨10.1186/2046-1682-5-21⟩ Article dans une revue hal-03510102v1
On the topology of chromatin fibres Maria Barbi,Julien Mozziconacci,Jean-Marc Victor,Hua Wong,Christophe Lavelle Interface Focus, 2012, 2 (5), pp.546-554. ⟨10.1098/rsfs.2011.0101⟩ Article dans une revue hal-03510056v1
Effective interaction between charged nanoparticles and DNA Fabien Paillusson,Vincent Dahirel,Marie Jardat,Jean-Marc Victor,Maria Barbi Physical Chemistry Chemical Physics, 2011, 13 (27), pp.12603. ⟨10.1039/c1cp20324j⟩ Article dans une revue hal-03510036v1
Chromatin topological transitions Christophe Lavelle,Aurélien Bancaud,Pierre Recouvreux,Maria Barbi,Jean-Marc Victoret al. Progress of Theoretical Physics Supplement, 2011, 191, pp.30-39 Article dans une revue hal-01053106v1
Linker histones incorporation maintains chromatin fiber plasticity. Pierre Recouvreux,Christophe Lavelle,Maria Barbi,Natalia Conde E Silva,Eric Le Camet al. Biophysical Journal, 2011, 100 (11), pp.2726-35. ⟨10.1016/j.bpj.2011.03.064⟩ Article dans une revue hal-00625637v1
Transcription within Condensed Chromatin: Steric Hindrance Facilitates Elongation Christophe Bécavin,Maria Barbi,Jean-Marc Victor,Annick Lesne Biophysical Journal, 2010, 98 (5), pp.824-833. ⟨10.1016/j.bpj.2009.10.054⟩ Article dans une revue hal-03510014v1
Nonspecific DNA-Protein Interaction: Why Proteins Can Diffuse along DNA Vincent Dahirel,Fabien Paillusson,Marie Jardat,Maria Barbi,Jean-Marc Victor Physical Review Letters, 2009, 102 (22), ⟨10.1103/PhysRevLett.102.228101⟩ Article dans une revue hal-03509993v1
Poisson-Boltzmann for oppositely charged bodies: an explicit derivation Jean-Marc Victor,Maria Barbi,Fabien Paillusson Molecular Physics, 2009, 107 (13), pp.1379-1391. ⟨10.1080/00268970902893156⟩ Article dans une revue hal-00513286v1
Nucleosome chiral transition under positive torsional stress in single chromatin fibers. Aurélien Bancaud,Gaudeline Wagner,Natalia Conde E Silva,Christophe Lavelle,Hua Wonget al. Molecular Cell, 2007, 27 (1), pp.135-47. ⟨10.1016/j.molcel.2007.05.037⟩ Article dans une revue hal-00181873v1
A physical model for the condensation and decondensation of eukaryotic chromosomes Julien Mozziconacci,Christophe Lavelle,Maria Barbi,Annick Lesne,Jean-Marc Victor FEBS Letters, 2006, 580 (2), pp.368-372. ⟨10.1016/j.febslet.2005.12.053⟩ Article dans une revue hal-03509975v1
Structural plasticity of single chromatin fibers revealed by torsional manipulation. Aurélien Bancaud,Natalia Conde E Silva,Maria Barbi,Gaudeline Wagner,Jean-François Allemandet al. Nature Structural and Molecular Biology, 2006, 13, pp.444-450. ⟨10.1038/nsmb1087⟩ Article dans une revue hal-00090147v1
How does the chromatin fiber deal with topological constraints? Maria Barbi,Julien Mozziconacci,Jean-Marc Victor Physical Review E : Statistical, Nonlinear, and Soft Matter Physics [2001-2015], 2005, 71, pp.031910. ⟨10.1103/PhysRevE.71.031910⟩ Article dans une revue hal-00012986v1
A Model of Sequence Dependent Protein Diffusion Along Dna Maria Barbi,Christophe Place,Vladislav Popkov,Mario Salerno Journal of Biological Physics, 2004, 30,no.3, pp.203-226. ⟨10.1023/B:JOBP.0000046728.51620.14⟩ Article dans une revue hal-00012987v1
Base-sequence-dependent sliding of proteins on DNA Maria Barbi,Christophe Place,Vladislav Popkov,Mario Salerno Physical Review E : Statistical, Nonlinear, and Soft Matter Physics [2001-2015], 2004, 70, pp.041901 Article dans une revue hal-00003424v1
Thermal denaturation of a helicoidal DNA model Maria Barbi,Stefano Lepri,Michel Peyrard,Nikos Theodorakopoulos Physical Review E , 2003, 68 (6), ⟨10.1103/PhysRevE.68.061909⟩ Article dans une revue hal-03509963v1
Stabilization of ratchet dynamics by weak periodic signals Maria Barbi,Mario Salerno Physical Review E , 2001, 63 (6), ⟨10.1103/PhysRevE.63.066212⟩ Article dans une revue hal-03509953v1
Phase locking effect and current reversals in deterministic underdamped ratchets Maria Barbi,Mario Salerno Physical Review E , 2000, 62 (2), pp.1988-1994. ⟨10.1103/PhysRevE.62.1988⟩ Article dans une revue hal-03509593v1
Vector nonlinear Klein-Gordon lattices: General derivation of small amplitude envelope soliton solutions Simona Cocco,Maria Barbi,Michel Peyrard Physics Letters A, 1999, 253 (3-4), pp.161-167. ⟨10.1016/S0375-9601(99)00058-4⟩ Article dans une revue hal-03509237v1
A Twist Opening Model for DNA Maria Barbi,Simona Cocco,Michel Peyrard,Stefano Ruffo Journal of Biological Physics, 1999, 24 (2/4), pp.97-114. ⟨10.1023/A:1005139326775⟩ Article dans une revue hal-03509228v1
Dynamical model for DNA sequences P. Allegrini,Maria Barbi,P. Grigolini,B. West Physical Review E , 1995, 52 (5), pp.5281-5296. ⟨10.1103/PhysRevE.52.5281⟩ Article dans une revue hal-03509184v1

Communication dans un congrès (1)

IN SILICO MANIPULATION OF SINGLE DNA MOLECULES Maria Barbi,R. Cortini,P. Carrivain International Symposium on Mathematical and Computational Biology, 2014, Poznan, France. pp.245-261, ⟨10.1142/9789814667944_0016⟩ Communication dans un congrès hal-03518414v1

Poster de conférence (2)

Nanomanipulation of single chromatin fiber with magnetic tweezers Aurélien Bancaud,Gaudeline Wagner,Natalia Conde e Silva,Pierre Recouvreux,Christophe Lavelleet al. 6th European Biophysics Congress, 2007, Londres, United Kingdom Poster de conférence hal-04339183v1
Torsional manipulation of single chromatin fibers reveals a highly flexible structure Aurélien Bancaud,Gaudeline Wagner,Natalia Conde e Silva,Maria Barbi,J.-F. Allemandet al. European Biophysical Society Meeting, 2005, Montpellier, France Poster de conférence hal-04345467v1

Chapitre d'ouvrage (3)

The Role of Supercoiling in the Motor Activity of RNA Polymerases Annick C Lesne,Jean-Marc Victor,Edouard Bertrand,Eugenia Basyuk,Maria Barbi Methods in Molecular Biology, pp.215-232, 2018, ⟨10.1007/978-1-4939-8556-2_11⟩ Chapitre d'ouvrage hal-02343520v1
ON THE ION-MEDIATED INTERACTION BETWEEN PROTEIN AND DNA Maria Barbi,F. Paillusson Symmetries and Groups in Contemporary Physics, WORLD SCIENTIFIC, pp.231-236, 2013, ⟨10.1142/9789814518550_0028⟩ Chapitre d'ouvrage hal-03518420v1
Protein–DNA Electrostatics Maria Barbi,Fabien Paillusson Dynamics of Proteins and Nucleic Acids, 92, Elsevier, pp.253-297, 2013, Advances in Protein Chemistry and Structural Biology, ⟨10.1016/B978-0-12-411636-8.00007-9⟩ Chapitre d'ouvrage hal-03518417v1