Marianne De Paepe

Documents

Publications

	Purchases dominate the carbon footprint of research laboratories Marianne de Paepe , Laurent Jeanneau , Jerôme Mariette , Olivier Aumont , André Estevez-Torres PLOS Sustainability and Transformation, 2024, 3 (7), pp.e0000116. ⟨10.1371/journal.pstr.0000116⟩ Journal articles hal-04666497v1
	Comparison of interferometric light microscopy with nanoparticle tracking analysis for the study of extracellular vesicles and bacteriophages Romain Sausset , Zuzana Krupova , Eric Guédon , Sandrine Peron , Alice Grangier Journal of Extracellular Biology, 2023, 2 (2), pp.e75. ⟨10.1002/jex2.75⟩ Journal articles hal-04003317v2
	Viruses of Microbes 2020: The Latest Conquest on Viruses of Microbes Tessa E F Quax , Marianne de Paepe , Karin Holmfeldt Viruses, 2021, 13 (5), pp.802. ⟨10.3390/v13050802⟩ Journal articles hal-04127728v1
	New insights into intestinal phages Romain Sausset , Marie-Agnès Petit , V. Gaboriau-Routhiau , Marianne de Paepe Mucosal Immunology, 2020, 13 (2), pp.205-215. ⟨10.1038/s41385-019-0250-5⟩ Journal articles hal-02912995v1
	Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles Eric Dugat-Bony , Julien Lossouarn , Marianne de Paepe , Anne-Sophie Sarthou , Yasmina Fedala Food Microbiology, 2020, 85 (103278), ⟨10.1016/j.fm.2019.103278⟩ Journal articles hal-02623156v1
	The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition Jeffrey Cornuault , Elisabeth Moncaut , Valentin Loux , Aurélie Mathieu , Harry Sokol The International Society of Microbiologial Ecology Journal, 2020, 14 (3), pp.771-787. ⟨10.1038/s41396-019-0566-x⟩ Journal articles hal-02504597v1
	Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes Jeffrey K. Cornuault , Marie-Agnès Petit , Mahendra Mariadassou , Leandro Benevides , Elisabeth Moncaut Microbiome, 2018, 6 (1), 14 p. ⟨10.1186/s40168-018-0452-1⟩ Journal articles hal-01774632v1
	Inflammation boosts bacteriophage transfer between Salmonella spp. Mederic Diard , Erik Bakkeren , Jeffrey Cornuault , Kathrin Moor , Annika Hausmann Science, 2017, 355 (6330), pp.1-5. ⟨10.1126/science.aaf8451⟩ Journal articles hal-01607431v1
	Bactériophages et dysbioses intestinales Marianne de Paepe , Jeffrey Cornuault , Marie-Agnès Petit Bulletin de l'Association des Anciens Elèves de l'Institut Pasteur, 2016, 58 (226), pp.7-10 Journal articles hal-01533893v1
	Carriage of λ latent virus is costly for its bacterial host due to frequent reactivation in monoxenic mouse intestine Marianne de Paepe , Laurent Tournier , Elisabeth Moncaut , Olivier Son , Philippe P. Langella PLoS Genetics, 2016, 12 (2), ⟨10.1371/journal.pgen.1005861⟩ Journal articles hal-02637844v1
	Bactériophages et microbiote intestinal Marianne de Paepe , Marie-Agnès Petit Bulletin de l'Association des Anciens Elèves de l'Institut Pasteur, 2016, 58 (226), pp.4-6 Journal articles hal-01533892v1
	Temperate phages acquire DNA from defective prophages by relaxed homologous recombination: the role of rad52-like recombinases. Marianne de Paepe , Geoffrey Hutinet , Olivier Son , Jihane Amarir , Sophie Schbath PLoS Genetics, 2014, 10 (3), pp.1-15. ⟨10.1371/journal.pgen.1004181⟩ Journal articles hal-01134590v1
	Killing the killers Marianne de Paepe , Marie Agnes Petit eLife, 2014, 3, pp.e04168. ⟨10.7554/eLife.04168⟩ Journal articles hal-01204493v1
	Bacteriophages: an underestimated role in human and animal health ? Marianne de Paepe , Marion Leclerc , Marie-Agnès Petit , Colin R. Tinsley Frontiers in Cellular and Infection Microbiology, 2014, 4, p. 39. ⟨10.3389/fcimb.2014.00039⟩ Journal articles hal-03665153v1
	Bacteriophages: an underestimated role in human and animal health? Marianne de Paepe , Marion Leclerc , Colin R. Tinsley , Marie Agnes Petit Frontiers in Cellular and Infection Microbiology, 2014, 4, ⟨10.3389/fcimb.2014.00039⟩ Journal articles hal-01204359v1
	Respiratory complex I deficiency induces drought tolerance by impacting leaf stomatal and hydraulic conductances. Reda Djebbar , Touhami Rzigui , Pierre Pétriacq , Caroline Mauve , Pierrick Priault Planta, 2012, 235 (3), pp.603-614. ⟨10.1007/s00425-011-1524-7⟩ Journal articles hal-02648980v1
	Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut. Marianne de Paepe , Valérie Gaboriau-Routhiau , Dominique Rainteau , Sabine Rakotobe , François Taddei PLoS Genetics, 2011, 7 (6), pp.e1002107. ⟨10.1371/journal.pgen.1002107⟩ Journal articles inserm-00709328v1
	Emergence of variability in isogenic Escherichia coli populations infected by a filamentous virus Marianne de Paepe , Lydia Robert , Ariel B. Lindner , François Taddei , Silvia de Monte PLoS ONE, 2010, 5 (7), pp.e11823. ⟨10.1371/journal.pone.0011823⟩ Journal articles hal-02668951v1
	The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses Valérie Gaboriau Routhiau , Sabine Rakotobe , Emelyne Lécuyer , Imke Mulder , Annaig Lan Immunity, 2009, 31 (4), pp.677-689. ⟨10.1016/j.immuni.2009.08.020⟩ Journal articles hal-02666267v1
	Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut Antoine Giraud , Safia Arous , Marianne de Paepe , Valérie Gaboriau Routhiau , Jean-Christophe Bambou PLoS Genetics, 2008, 4 (1), pp.e2. ⟨10.1371/journal.pgen.0040002⟩ Journal articles hal-02661984v1
	Ecology of microbial invasions: amplification allows virus carriers to invade more rapidly when rare Sam P. Brown , Ludovic L. Le Chat , Marianne de Paepe , François Taddei Current Biology - CB, 2006, 16 (20), pp.2048-2052. ⟨10.1016/j.cub.2006.08.089⟩ Journal articles hal-02666343v1
	Viruses' Life History: Towards a Mechanistic Basis of a Trade-Off between Survival and Reproduction among Phages. Marianne de Paepe , François Taddei PLoS Biology, 2006, 4 (7), pp.e193. ⟨10.1371/journal.pbio.0040193⟩ Journal articles inserm-00080125v1

	Origins and rate of mutations in bacteriophage Lambda Julien Lopez , Mahendra Mariadassou , Valentin Loux , Rafael Sanjuán , Marina Elez Phages in Lyon 2023, phages.fr, Nov 2023, Lyon, France Conference papers hal-04321371v1
	Intestinal Virions in Crohn's disease patients Marianne De Paepe Viruses of Microbes 2022, Jul 2022, Guimaraes, Portugal Conference papers hal-04321104v1
	Intestinal Virions in Crohn's disease patients Marianne de Paepe XXIVème Journées Francophones de Virologie, Apr 2022, Strasbourg, France Conference papers hal-04321039v1
	The use of Interferometric Light Microscopy (ILM, Videodrop) for the quantification of EVs purified from stool samples Romain Sausset , Céline Henry , Marie-Agnès Petit , Luisa de Sordi , Marianne de Paepe Grand-Ouest Extracellular Vesicle Network: Innovation, Cancer & Therapy, Jun 2021, On line, France Conference papers hal-04320485v1
	Roseburia intestinalis resistance to phage predation by CRISPR spacer acquisition in the mouse gut Marianne de Paepe CRISPR 2021, Jun 2021, Paris, France Conference papers hal-04321056v1
	Recombinaison homologue chez les phages tempérés: impacts sur l’évolution de leur variabilité génétique Marianne de Paepe XXIIèmes Journées Francophones de Virologie, Mar 2019, Lyon, France Conference papers hal-04321075v1
	Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystems Marianne de Paepe , Eric Dugat-Bony , Jérôme Hamelin , Mahendra Mariadassou , Kim Milferstedt Phages On Marseille, Nov 2016, Marseille, France. pp.1 Conference papers hal-01531724v1
	P60 - Bile salts as a source of strain diversification in the mouse gut Marianne de Paepe , François Taddei , Nadine Cerf - Bensussan Journées des Microbiologistes de l'INRA, May 2010, Poitiers, France Conference papers hal-01204244v1

	Real-time monitoring of replication errors’ fate in single Escherichia coli cells reveals the origin and dynamics of spontaneous mutations Chiara Enrico Bena , Jean Ollion , Marianne De Paepe , Magali Ventroux , Lydia Robert Physics and Biological Systems 2024, Jun 2024, Palaiseau (Ecole Polytechnique), France Conference poster hal-04637570v1
	Phage mutation rates Julien Lopez , Yuvaraj Bhoobalan , Magali Ventroux , Marina Elez , Marianne De Paepe Phages in Paris, Oct 2022, Paris, France Conference poster hal-04321260v1
	The use of interferometric microscopy to quantify viral particles in complex samples such as fecal samples Romain Sausset , Matthieu Greffet , Marie-Agnès Petit , Marianne de Paepe Phages 2019 - The Oxford Bacteriophage Conference, Sep 2019, Oxford, United Kingdom Conference poster hal-04320998v1

Marianne De Paepe

Publications

Purchases dominate the carbon footprint of research laboratories

Comparison of interferometric light microscopy with nanoparticle tracking analysis for the study of extracellular vesicles and bacteriophages

Viruses of Microbes 2020: The Latest Conquest on Viruses of Microbes

New insights into intestinal phages

Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles

The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition

Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes

Inflammation boosts bacteriophage transfer between Salmonella spp.

Bactériophages et dysbioses intestinales

Carriage of λ latent virus is costly for its bacterial host due to frequent reactivation in monoxenic mouse intestine

Bactériophages et microbiote intestinal

Temperate phages acquire DNA from defective prophages by relaxed homologous recombination: the role of rad52-like recombinases.

Killing the killers

Bacteriophages: an underestimated role in human and animal health ?

Bacteriophages: an underestimated role in human and animal health?

Respiratory complex I deficiency induces drought tolerance by impacting leaf stomatal and hydraulic conductances.

Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut.

Emergence of variability in isogenic Escherichia coli populations infected by a filamentous virus

The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses

Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut

Ecology of microbial invasions: amplification allows virus carriers to invade more rapidly when rare

Viruses' Life History: Towards a Mechanistic Basis of a Trade-Off between Survival and Reproduction among Phages.

Origins and rate of mutations in bacteriophage Lambda

Intestinal Virions in Crohn's disease patients

Intestinal Virions in Crohn's disease patients

The use of Interferometric Light Microscopy (ILM, Videodrop) for the quantification of EVs purified from stool samples

Roseburia intestinalis resistance to phage predation by CRISPR spacer acquisition in the mouse gut

Recombinaison homologue chez les phages tempérés: impacts sur l’évolution de leur variabilité génétique

Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystems

P60 - Bile salts as a source of strain diversification in the mouse gut

Real-time monitoring of replication errors’ fate in single Escherichia coli cells reveals the origin and dynamics of spontaneous mutations

Phage mutation rates

The use of interferometric microscopy to quantify viral particles in complex samples such as fecal samples