Marianne De Paepe

36
Documents

Publications

Publications

T7 DNA polymerase treatment improves quantitative sequencing of both double-stranded and single-stranded DNA viruses

Maud Billaud , Ilias Theodorou , Quentin Lamy-Besnier , Shiraz Shah , François Lecointe et al.
Peer Community Journal, 2024, 4, pp.e63. ⟨10.24072/pcjournal.437⟩
Article dans une revue hal-04662155 v1
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Purchases dominate the carbon footprint of research laboratories

Marianne de Paepe , Laurent Jeanneau , Jerôme Mariette , Olivier Aumont , André Estevez-Torres
PLOS Sustainability and Transformation, 2024, 3 (7), pp.e0000116. ⟨10.1371/journal.pstr.0000116⟩
Article dans une revue (data paper) hal-04666497 v2
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Comparison of interferometric light microscopy with nanoparticle tracking analysis for the study of extracellular vesicles and bacteriophages

Romain Sausset , Zuzana Krupova , Eric Guédon , Sandrine Peron , Alice Grangier et al.
Journal of Extracellular Biology, 2023, 2 (2), pp.e75. ⟨10.1002/jex2.75⟩
Article dans une revue hal-04003317 v2
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Viruses of Microbes 2020: The Latest Conquest on Viruses of Microbes

Tessa E F Quax , Marianne de Paepe , Karin Holmfeldt
Viruses, 2021, 13 (5), pp.802. ⟨10.3390/v13050802⟩
Article dans une revue hal-04127728 v1

The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition

Jeffrey Cornuault , Elisabeth Moncaut , Valentin Loux , Aurélie Mathieu , Harry Sokol et al.
The International Society of Microbiologial Ecology Journal, 2020, 14 (3), pp.771-787. ⟨10.1038/s41396-019-0566-x⟩
Article dans une revue hal-02504597 v1
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New insights into intestinal phages

Romain Sausset , Marie-Agnès Petit , V. Gaboriau-Routhiau , Marianne de Paepe
Mucosal Immunology, 2020, 13 (2), pp.205-215. ⟨10.1038/s41385-019-0250-5⟩
Article dans une revue hal-02912995 v1
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Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles

Eric Dugat-Bony , Julien Lossouarn , Marianne de Paepe , Anne-Sophie Sarthou , Yasmina Fedala et al.
Food Microbiology, 2020, 85 (103278), ⟨10.1016/j.fm.2019.103278⟩
Article dans une revue hal-02623156 v1
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Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes

Jeffrey K. Cornuault , Marie-Agnès Petit , Mahendra Mariadassou , Leandro Benevides , Elisabeth Moncaut et al.
Microbiome, 2018, 6 (1), 14 p. ⟨10.1186/s40168-018-0452-1⟩
Article dans une revue hal-01774632 v1

Inflammation boosts bacteriophage transfer between Salmonella spp.

Mederic Diard , Erik Bakkeren , Jeffrey Cornuault , Kathrin Moor , Annika Hausmann et al.
Science, 2017, 355 (6330), pp.1-5. ⟨10.1126/science.aaf8451⟩
Article dans une revue hal-01607431 v1
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Carriage of λ latent virus is costly for its bacterial host due to frequent reactivation in monoxenic mouse intestine

Marianne de Paepe , Laurent Tournier , Elisabeth Moncaut , Olivier Son , Philippe P. Langella et al.
PLoS Genetics, 2016, 12 (2), ⟨10.1371/journal.pgen.1005861⟩
Article dans une revue hal-02637844 v1

Bactériophages et dysbioses intestinales

Marianne de Paepe , Jeffrey Cornuault , Marie-Agnès Petit
Bulletin de l'Association des Anciens Elèves de l'Institut Pasteur, 2016, 58 (226), pp.7-10
Article dans une revue (article de synthèse) hal-01533893 v1

Bactériophages et microbiote intestinal

Marianne de Paepe , Marie-Agnès Petit
Bulletin de l'Association des Anciens Elèves de l'Institut Pasteur, 2016, 58 (226), pp.4-6
Article dans une revue (article de synthèse) hal-01533892 v1
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Killing the killers

Marianne de Paepe , Marie Agnes Petit
eLife, 2014, 3, pp.e04168. ⟨10.7554/eLife.04168⟩
Article dans une revue (article de synthèse) hal-01204493 v1
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Bacteriophages: an underestimated role in human and animal health?

Marianne de Paepe , Marion Leclerc , Colin R. Tinsley , Marie Agnes Petit
Frontiers in Cellular and Infection Microbiology, 2014, 4, ⟨10.3389/fcimb.2014.00039⟩
Article dans une revue hal-01204359 v1
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Temperate phages acquire DNA from defective prophages by relaxed homologous recombination: the role of rad52-like recombinases.

Marianne de Paepe , Geoffrey Hutinet , Olivier Son , Jihane Amarir , Sophie Schbath et al.
PLoS Genetics, 2014, 10 (3), pp.1-15. ⟨10.1371/journal.pgen.1004181⟩
Article dans une revue hal-01134590 v1
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Bacteriophages: an underestimated role in human and animal health ?

Marianne de Paepe , Marion Leclerc , Marie-Agnès Petit , Colin R. Tinsley
Frontiers in Cellular and Infection Microbiology, 2014, 4, p. 39. ⟨10.3389/fcimb.2014.00039⟩
Article dans une revue hal-03665153 v1

Respiratory complex I deficiency induces drought tolerance by impacting leaf stomatal and hydraulic conductances.

Reda Djebbar , Touhami Rzigui , Pierre Pétriacq , Caroline Mauve , Pierrick Priault et al.
Planta, 2012, 235 (3), pp.603-614. ⟨10.1007/s00425-011-1524-7⟩
Article dans une revue istex hal-02648980 v1
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Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut.

Marianne de Paepe , Valérie Gaboriau-Routhiau , Dominique Rainteau , Sabine Rakotobe , François Taddei et al.
PLoS Genetics, 2011, 7 (6), pp.e1002107. ⟨10.1371/journal.pgen.1002107⟩
Article dans une revue inserm-00709328 v1
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Emergence of variability in isogenic <em>Escherichia coli</em> populations infected by a filamentous virus

Marianne de Paepe , Lydia Robert , Ariel B. Lindner , François Taddei , Silvia de Monte
PLoS ONE, 2010, 5 (7), pp.e11823. ⟨10.1371/journal.pone.0011823⟩
Article dans une revue hal-02668951 v1

The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses

Valérie Gaboriau Routhiau , Sabine Rakotobe , Emelyne Lécuyer , Imke Mulder , Annaig Lan et al.
Immunity, 2009, 31 (4), pp.677-689. ⟨10.1016/j.immuni.2009.08.020⟩
Article dans une revue hal-02666267 v1
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Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut

Antoine Giraud , Safia Arous , Marianne de Paepe , Valérie Gaboriau Routhiau , Jean-Christophe Bambou et al.
PLoS Genetics, 2008, 4 (1), pp.e2. ⟨10.1371/journal.pgen.0040002⟩
Article dans une revue hal-02661984 v1
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Viruses' Life History: Towards a Mechanistic Basis of a Trade-Off between Survival and Reproduction among Phages.

Marianne de Paepe , François Taddei
PLoS Biology, 2006, 4 (7), pp.e193. ⟨10.1371/journal.pbio.0040193⟩
Article dans une revue inserm-00080125 v1

Ecology of microbial invasions: amplification allows virus carriers to invade more rapidly when rare

Sam P. Brown , Ludovic L. Le Chat , Marianne de Paepe , François Taddei
Current Biology, 2006, 16 (20), pp.2048-2052. ⟨10.1016/j.cub.2006.08.089⟩
Article dans une revue hal-02666343 v1

Origins and rate of mutations in bacteriophage Lambda

Julien Lopez , Mahendra Mariadassou , Valentin Loux , Rafael Sanjuán , Marina Elez et al.
Phages in Lyon 2023, phages.fr, Nov 2023, Lyon, France
Communication dans un congrès hal-04321371 v1

Intestinal Virions in Crohn's disease patients

Marianne de Paepe
XXIVème Journées Francophones de Virologie, Apr 2022, Strasbourg, France
Communication dans un congrès hal-04321039 v1

Intestinal Virions in Crohn's disease patients

Marianne De Paepe
Viruses of Microbes 2022, Jul 2022, Guimaraes, Portugal
Communication dans un congrès hal-04321104 v1

The use of Interferometric Light Microscopy (ILM, Videodrop) for the quantification of EVs purified from stool samples

Romain Sausset , Céline Henry , Marie-Agnès Petit , Luisa de Sordi , Marianne de Paepe
Grand-Ouest Extracellular Vesicle Network: Innovation, Cancer & Therapy, Jun 2021, On line, France
Communication dans un congrès hal-04320485 v1

Roseburia intestinalis resistance to phage predation by CRISPR spacer acquisition in the mouse gut

Marianne de Paepe
CRISPR 2021, Jun 2021, Paris, France
Communication dans un congrès hal-04321056 v1

Recombinaison homologue chez les phages tempérés: impacts sur l’évolution de leur variabilité génétique

Marianne de Paepe
XXIIèmes Journées Francophones de Virologie, Mar 2019, Lyon, France
Communication dans un congrès hal-04321075 v1

Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystems

Marianne de Paepe , Eric Dugat-Bony , Jérôme Hamelin , Mahendra Mariadassou , Kim Milferstedt et al.
Phages On Marseille, Nov 2016, Marseille, France. pp.1
Communication dans un congrès hal-01531724 v1

P60 - Bile salts as a source of strain diversification in the mouse gut

Marianne de Paepe , François Taddei , Nadine Cerf - Bensussan
Journées des Microbiologistes de l'INRA, May 2010, Poitiers, France
Communication dans un congrès hal-01204244 v1