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Marie Doumic



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A mathematical model of p62-ubiquitin aggregates in autophagy

Julia Delacour , Marie Doumic , Sascha Martens , Christian Schmeiser , Gabriele Zaffagnini et al.
Journal of Mathematical Biology, 2022, 84 (3), ⟨10.1007/s00285-021-01659-2⟩
Journal articles hal-02548223v1
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Insights into the dynamic trajectories of protein filament division revealed by numerical investigation into the mathematical model of pure fragmentation

Magali Tournus , Miguel Escobedo , Wei-Feng Xue , Marie Doumic
PLoS Computational Biology, 2021, 17 (9), pp.e1008964. ⟨10.1371/journal.pcbi.1008964⟩
Journal articles hal-03131754v1
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Telomere shortening causes distinct cell division regimes during replicative senescence in Saccharomyces cerevisiae

Hugo Martin , Marie Doumic , Maria Teresa Teixeira , Zhou Xu
Cell & Bioscience, 2021, 11 (1), ⟨10.1186/s13578-021-00693-3⟩
Journal articles hal-03374435v1
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Estimating the division rate from indirect measurements of single cells

Marie Doumic , Adélaïde Olivier , Lydia Robert
Discrete and Continuous Dynamical Systems - Series B, 2020, 25 (10), pp.3931--3961. ⟨10.3934/dcdsb.2020078⟩
Journal articles hal-02175633v1
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A purely mechanical model with asymmetric features for early morphogenesis of rod-shaped bacteria micro-colony

Marie Doumic , Sophie Hecht , Diane Peurichard
Mathematical Biosciences and Engineering, 2020, 17 (6), ⟨10.3934/mbe.2020356⟩
Journal articles hal-02865566v1
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The Division of Amyloid Fibrils: Systematic Comparison of Fibril Fragmentation Stability by Linking Theory with Experiments

David Béal , Magali Tournus , Ricardo Marchante , Tracey Purton , David Smith et al.
iScience, 2020, 23 (9), ⟨10.1016/j.isci.2020.101512⟩
Journal articles hal-01966243v1
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Cyclic asymptotic behaviour of a population reproducing by fission into two equal parts

Etienne Bernard , Marie Doumic , Pierre Gabriel
Kinetic and Related Models , 2019, 12 (3), pp.551-571. ⟨10.3934/krm.2019022⟩
Journal articles hal-01363549v5

Bidirectional sliding of two parallel microtubules generated by multiple identical motors

Jun Allard , Marie Doumic , Alex Mogilner , Dietmar Oelz
Journal of Mathematical Biology, 2019, ⟨10.1007/s00285-019-01369-w⟩
Journal articles hal-02181135v1
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A bi-monomeric, nonlinear Becker-Döring-type system to capture oscillatory aggregation kinetics in prion dynamics

Marie Doumic , Klemens Fellner , Mathieu Mezache , Human Rezaei
Journal of Theoretical Biology, 2019, 480, pp.241--261. ⟨10.1016/j.jtbi.2019.08.007⟩
Journal articles hal-01863748v1
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Early stage prion assembly involves two subpopulations with different quaternary structures and a secondary templating pathway

Angélique Igel-Egalon , Florent Laferrière , Mohammed Moudjou , Jan Bohl , Mathieu Mezache et al.
Communications Biology, 2019, 2 (1), pp.1-13. ⟨10.1038/s42003-019-0608-y⟩
Journal articles hal-02317910v1
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Pressure Reveals Unique Conformational Features in Prion Protein Fibril Diversity

Joan Torrent , Davy Martin , Sylvie Noinville , Yi Yin , Marie Doumic et al.
Scientific Reports, 2019, 9, pp.2802. ⟨10.1038/s41598-019-39261-8⟩
Journal articles hal-02057700v1
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Long-time asymptotics for polymerization models

Juan Calvo , Marie Doumic , Benoît Perthame
Communications in Mathematical Physics, 2018, 363 (1), pp.111-137. ⟨10.1007/s00220-018-3218-5⟩
Journal articles hal-01570292v2
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Estimating the division rate and kernel in the fragmentation equation

Marie Doumic , Miguel Escobedo , Magali Tournus
Annales de l'Institut Henri Poincaré C, Analyse non linéaire, 2018, 35 (7), pp.1847-1884. ⟨10.1016/j.anihpc.2018.03.004⟩
Journal articles hal-01501811v2
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Relative Entropy Method for Measure Solutions of the Growth-Fragmentation Equation

Tomasz Dębiec , Marie Doumic , Piotr Gwiazda , Emil Wiedemann
SIAM Journal on Applied Mathematics, 2018, 50 (6), pp.5811-5824
Journal articles hal-01762974v1
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A numerical scheme for the early steps of nucleation-aggregation Models

Harvey Thomas Banks , Marie Doumic , Carola Kruse
Journal of Mathematical Biology, 2017, 74 (1-2), pp.259-287. ⟨10.1007/s00285-016-1026-0⟩
Journal articles hal-00954437v1
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Toward an integrated workforce planning framework using structured equations

Marie Doumic , Benoît Perthame , Edouard Ribes , Delphine Salort , Nathan Toubiana et al.
European Journal of Operational Research, 2017, 262, ⟨10.1016/j.ejor.2017.03.076⟩
Journal articles hal-01343368v2
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The mechanism of monomer transfer between two structurally distinct PrP oligomers

Aurora Armiento , Philippe Moireau , Davy Martin , Nad’a Lepejova , Marie Doumic et al.
PLoS ONE, 2017, 12 (7), ⟨10.1371/journal.pone.0180538⟩
Journal articles hal-01574346v1
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Estimation from Moments Measurements for Amyloid Depolymerisation

Aurora Armiento , Marie Doumic , Philippe Moireau , Human Rezaei
Journal of Theoretical Biology, 2016, 397, pp.68 - 88. ⟨10.1016/j.jtbi.2016.02.037⟩
Journal articles hal-01248255v1
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Time Asymptotics for a Critical Case in Fragmentation and Growth-Fragmentation Equations

Marie Doumic , Miguel Escobedo
Kinetic and Related Models , 2016, 9 (2), pp.47. ⟨10.3934/krm.2016.9.251⟩
Journal articles hal-01080361v3
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Insights into the variability of nucleated amyloid polymerization by a minimalistic model of stochastic protein assembly

Sarah Eugene , Wei-Feng Xue , Philippe Robert , Marie Doumic
Journal of Chemical Physics, 2016, 144 (17), pp.12. ⟨10.1063/1.4947472⟩
Journal articles hal-01205549v3

Asymptotics of Stochastic Protein Assembly Models

Marie Doumic , Sarah Eugene , Philippe Robert
SIAM Journal on Applied Mathematics, 2016, 76 (6), pp.20. ⟨10.1137/16M1066920⟩
Journal articles hal-01301266v1
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Microscopic approach of a time elapsed neural model

Julien Chevallier , Maria J. Caceres , Marie Doumic , Patricia Reynaud-Bouret
Mathematical Models and Methods in Applied Sciences, 2015, ⟨10.1142/S021820251550058X⟩
Journal articles hal-01159215v1
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The asymmetry of telomere replication contributes to replicative senescence heterogeneity

Thibault Bourgeron , Zhou Xu , Marie Doumic , Maria Teresa Teixeira
Scientific Reports, 2015, 5, pp.15326. ⟨10.1038/srep15326⟩
Journal articles hal-01272075v1
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Statistical estimation of a growth-fragmentation model observed on a genealogical tree

Marie Doumic , Marc Hoffmann , Nathalie Krell , Lydia Robert
Bernoulli, 2015, 21 (3), pp.1760-1799. ⟨10.3150/14-BEJ623⟩
Journal articles hal-01102799v1
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Information Content in Data Sets for a Nucleated-Polymerization Model

H. T. Banks , Marie Doumic , Carola Kruse , Stephanie Prigent , H Rezaei et al.
Journal of Biological Dynamics, 2015, 9 (1), pp.26. ⟨10.1080/17513758.2015.1050465⟩
Journal articles hal-01123847v1
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Size distribution of amyloid brils. Mathematical models and experimental data.

Stephanie Prigent , Hadjer Wafaa Haffaf , H. T. Banks , M. Hoffmann , Human Rezaei et al.
International Journal of Pure and Applied Mathematics, 2014, 93 (6), pp.845-878. ⟨10.12732/ijpam.v93i6.10⟩
Journal articles hal-00958785v2
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Division in Escherichia coli is triggered by a size-sensing rather than a timing mechanism

Lydia Robert , Marc Hoffmann , Nathalie Krell , Stéphane Aymerich , Jérôme Robert et al.
BMC Biology, 2014, 12 (1), pp.17. ⟨10.1186/1741-7007-12-17⟩
Journal articles hal-00981312v1
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Estimating the Division Rate of the Self-Similar Growth-Fragmentation Equation

Thibault Bourgeron , Marie Doumic , Miguel Escobedo
Inverse Problems, 2014, 30 (2), pp.025007, 28
Journal articles hal-00858488v1
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Data-driven modeling of SRC control on the mitochondrial pathway of apoptosis: implication for anticancer therapy optimization.

Annabelle Ballesta , Jonathan Lopez , Nikolay Popgeorgiev , Philippe Gonzalo , Marie Doumic et al.
PLoS Computational Biology, 2013, 9 (4), pp.e1003011. ⟨10.1371/journal.pcbi.1003011⟩
Journal articles hal-00849021v1
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Estimating the Division Rate for the Growth-Fragmentation Equation

Marie Doumic-Jauffret , Leon M. Tine
Journal of Mathematical Biology, 2013, 67 (1), pp.69-103. ⟨10.1007/s00285-012-0553-6⟩
Journal articles hal-00634539v1
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Self-similarity in a General Aggregation-Fragmentation Problem ; Application to Fitness Analysis

Vincent Calvez , Marie Doumic-Jauffret , Pierre Gabriel
Journal de Mathématiques Pures et Appliquées, 2012, 98 (1), pp.1-27. ⟨10.1016/j.matpur.2012.01.004⟩
Journal articles hal-00539279v2
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Nonparametric estimation of the division rate of a size-structured population

Marie Doumic-Jauffret , Marc Hoffmann , Patricia Reynaud-Bouret , Vincent Rivoirard
SIAM Journal on Numerical Analysis, 2012, 50 (2), pp.925--950. ⟨10.1137/110828344⟩
Journal articles hal-00578694v1
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An efficient kinetic model for assemblies of amyloid fibrils and its application to polyglutamine aggregation.

Stephanie Prigent , Annabelle Ballesta , Frédérique Charles , Natacha Lenuzza , Pierre Gabriel et al.
PLoS ONE, 2012, 7 (11), pp.e43273. ⟨10.1371/journal.pone.0043273⟩
Journal articles hal-00778052v1
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A Structured Population Model of Cell Differentiation

Marie Doumic , Anna Marciniak-Czochra , Benoît Perthame , Jorge Zubelli
SIAM Journal on Applied Mathematics, 2011, 71 (6), pp.1918-1940. ⟨10.1137/100816584⟩
Journal articles inria-00541860v1

A new model for the estimation of cell proliferation dynamics using CFSE data.

H. T. Banks , Karyn L Sutton , W Clayton Thompson , Gennady Bocharov , Marie Doumic et al.
Journal of Immunological Methods, 2011, 373 (1-2), pp.143-60. ⟨10.1016/j.jim.2011.08.014⟩
Journal articles hal-00778058v1
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Eigenelements of a General Aggregation-Fragmentation Model

Marie Doumic-Jauffret , Pierre Gabriel
Mathematical Models and Methods in Applied Sciences, 2010, 20 (5), pp.757-783. ⟨10.1142/S021820251000443X⟩
Journal articles hal-00408088v3

Prion dynamics with size dependency-strain phenomena

Vincent Calvez , Natacha Lenuzza , Marie Doumic , Jean-Philippe Deslys , Franck Mouthon et al.
Journal of Biological Dynamics, 2010, 4 (1), pp.28-42. ⟨10.1080/17513750902935208⟩
Journal articles hal-00788492v1
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Stability Analysis of a Simplified Yet Complete Model for Chronic Myelegenous Leukemia

Marie Doumic-Jauffret , Peter S. Kim , Benoît Perthame
Bulletin of Mathematical Biology, 2010, 72 (7), pp.1732-1759. ⟨10.1007/s11538-009-9500-0⟩
Journal articles hal-00413152v1
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On the Calibration of a Size-Structured Population Model from Experimental Data

Marie Doumic-Jauffret , Pedro Maia , Jorge Zubelli
Acta Biotheoretica, 2010, 58 (4), pp.405-413. ⟨10.1007/s10441-010-9114-9⟩
Journal articles hal-00412637v1
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Label Structured Cell Proliferation Models.

H. T. Banks , Frédérique Charles , Marie Doumic-Jauffret , Karyn L Sutton , W Clayton Thompson et al.
Applied Mathematics Letters, 2010, 23 (12), pp.1412-1415. ⟨10.1016/j.aml.2010.07.009⟩
Journal articles hal-00778074v1
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Scaling limit of a discrete prion dynamics model

Marie Doumic , Thierry Goudon , Thomas Lepoutre
Communications in Mathematical Sciences, 2009, 7 (4), ⟨10.4310/CMS.2009.v7.n4.a3⟩
Journal articles inria-00403914v1
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Simulation of Laser Beam Propagation With a Paraxial Model in a Tilted Frame

Marie Doumic , Frédéric Duboc , François Golse , Rémi Sentis
Journal of Computational Physics, 2009, 228 (3), pp.861--880. ⟨10.1016/⟩
Journal articles hal-00327179v1
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Boundary Value Problem for an Oblique Paraxial Model of Light Propagation

Marie Doumic-Jauffret
Methods and Applications of Analysis, 2009, 16 (1), pp.119-138
Journal articles hal-00337162v1
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Numerical Solution of an Inverse Problem in Size-Structured Population Dynamics

Marie Doumic-Jauffret , Benoît Perthame , Jorge Zubelli
Inverse Problems, 2009, 25 (4), pp.045008. ⟨10.1088/0266-5611/25/4/045008⟩
Journal articles hal-00327151v1
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Analysis of a Population Model Structured by the Cells Molecular Content

Marie Doumic-Jauffret
Mathematical Modelling of Natural Phenomena, 2007, 2 (3), pp.121-152. ⟨10.1051/mmnp:2007006⟩
Journal articles hal-00327131v1

How the shortest telomere in the cell signals senescence

Prisca Berardi , Stefano Mattarocci , Rachel Langston , Pascale Jolivet , Gilles Charvin et al.
EMBO Workshop on Telomere function and evolution in health and disease, EMBO, Sep 2022, Troia, Portugal
Conference papers hal-03960641v1

The effect of the shortest telomere on cell proliferation

Stefano Mattarocci , Prisca Berardi , Rachel Langston , Stéphane Marcand , Marie Doumic et al.
Telomeres & Telomerase, Cold Spring Habor Laboratory, Dec 2021, Cold Spring Harbor, United States
Conference papers hal-03960655v1

Automated Quantification of Amyloid Fibrils Morphological Features by Image Processing Techniques

Yi Yin , Stephanie Prigent , Joan Torrent , Human Rezaei , Dirk Drasdo et al.
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.534-537, ⟨10.1109/ISBI.2019.8759597⟩
Conference papers hal-02973437v1

How the shortest telomere in the cell signals senescence

Stefano Mattarocci , Prisca Berardi , Rachel Langston , Stéphane Marcand , Marie Doumic et al.
Telomeres & Telomerase, Dec 2021, Cold Spring Harbor (New York), United States
Conference poster hal-03960682v1
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Growth-fragmentation equations in biology

Marie Doumic
Analysis of PDEs [math.AP]. Université Pierre et Marie Curie - Paris VI, 2013
Habilitation à diriger des recherches tel-00844123v1