Marie Mirouze Directrice de Recherche IRD

Publications

Poster de conférence (5)

Detection of transcriptomic structural variations in wild rice using Nanopore direct RNA sequencing. Marie-Christine Carpentier,Christel Llauro,Eric Lasserre,Marie Mirouze,Rod A. Winget al. JOBIM 2024: JOURNéES OUVERTES DE BIOLOGIE, INFORMATIQUE ET MATHéMATIQUES 2024, Jun 2024, TOULOUSE Université Paul Sabatier, France Poster de conférence hal-04919310v1
TEs as a major driver of genomic variation in trees ? Jumping MITEs in common beech revealed by TIPs and eccDNA Abirami Soundiramourtty,Lauren Clement,Christel Llauro,Olivier Panaud,Christophe Plomionet al. ICTE 2024 - International Congress on Transposable Elements, Apr 2024, Saint Malo, France. Poster de conférence hal-04907176v1
Clarifying the role of DNA methylation in tree phenotypic plasticity Mamadou Dia Sow,Anne-Laure Le Gac,Clément Lafon Placette,Alain Delaunay,Isabelle Le Janet al. 43. FEBS Congress, Biochemistry Forever, Jul 2018, Prague, Czech Republic. FEBS Open Bio, 8 (supplément S1), 2018, Supplément 43rd FEBS Congress, Biochemistry Forever, Prague, Czech Republic, July 7‐12, 2018 Poster de conférence hal-02736952v1
Drought-induced acclimation of DNA-hypomethylated poplars Anne-Laure Le Gac,Régis R. Fichot,Marie Mirouze,Vincent Segura,Alain Delaunayet al. IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. , 2016, IUFRO Genomics and Forest Tree Genetics. Abstract book Poster de conférence hal-02742078v1
Integration and Visualization of Epigenome and Mobilome Data in Crops Dagmara Robakowska Hyzorek,Marie Mirouze,Pierre Larmande JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. , 2016 Poster de conférence hal-01411668v1

Communication dans un congrès (9)

Plant genome stability and extrachromosomal circular DNA (eccDNA): vicious or virtuous circle? Marie Mirouze,Abirami Soundiramourtty,Christel Llauro,Assane Mbodj,Panpan Zhanget al. International Congress on Transposable Elements, GDR Elements transposables, Apr 2024, Saint Malo (FR), France Communication dans un congrès hal-04907186v1
Extrachromosomal circular DNA (eccDNA) and structural variants highlight genome instability in Arabidopsis epigenetic mutants Marie Mirouze,Panpan Zhang,Abirami Soundiramourtty,Christel Llauro,Assane Mbodjet al. FORUM Labex TULIP, Labex TULIP (Towards a Unified Theory of Biotic Interactions: roLe of environmental Perturbations); FR AIB (Fédération de Recherche Agrobiosciences, Interactions et Biodiversité), Oct 2023, Toulouse, France Communication dans un congrès hal-04907206v1
All you ever wanted to know about about extrachromosomal circular DNA (and never dared to ask!) Marie Mirouze "Pushing Boundaries", Vienna BioCenter PhD symposium, Nov 2022, Vienna ( virtual ), Austria Communication dans un congrès hal-04908153v1
Epigenetic control of genome stability in Arabidopsis thaliana Marie Mirouze Epigenetic Mechanisms of Crop Adaptation to Climate Change, EpiCatch, Jul 2021, Virtual conference, France Communication dans un congrès hal-04908163v1
Using long-read nanopore sequencing to unravel structural genomic variations in plants Marie-Christine Carpentier,Hshin-Ping Wu,Fu-Jin Wei,Christel Llauro,Marie Mirouzeet al. Nanopore London Calling 2019, Oxford Nanopore, May 2019, Londres (UK), United Kingdom Communication dans un congrès hal-04919461v1
Combining mobilome-seq and de novo genome assemblies to reveal TE dynamics in plant populations Marie Mirouze,Sophie Lanciano,Christel Llauro,Panpan Zhang International symposium EPI/GENETICS from basic research to plant breeding, INRAE, Oct 2018, Angers, France Communication dans un congrès hal-04908183v1
Sequencing mobilome reveals real time transposable element activity in plants and animals Marie Mirouze,Sophie Lanciano,Sophie Lanciano,Marie-Christine Carpentier,Christel Llauroet al. Conference on Epigenetic & Chromatin Regulation of Plant Traits, EpiTRAITS, Jan 2016, Strasbourg, France Communication dans un congrès hal-04908203v1
Mobilome sequencing reveals real time transposable element activity in plants Marie Mirouze,Sophie Lanciano,Marie-Christine Carpentier,Christel Llauro,Alain Ghesquiere ICTE 2016, GDR Elements transposables, Apr 2016, Saint Malo, France Communication dans un congrès hal-04908135v1
Epigenetic control of plant mobilomes Marie Mirouze Keystone Symposium on RNA Silencing in Plants, Keystone Symposium, Feb 2015, Keystone - Colorado, United States Communication dans un congrès hal-04908110v1

HDR (1)

A journey into the world of transposable elements. Activation, circular extrachromosomal DNA forms and impact on the genome: new avenues for understanding the mechanisms of plant evolution and adaptation. Marie Mirouze Botanique. Université de Perpignan Via Domitia, 2023 HDR tel-04873383v1

Article dans une revue (26)

45S rDNA Diversity In Natura as One Step towards Ribosomal Heterogeneity in Arabidopsis thaliana Valérie Delorme-Hinoux,Assane Mbodj,Sophie Brando,Anne de Bures,Christel Llauroet al. Plants, 2023, 12 (14), pp.2722. ⟨10.3390/plants12142722⟩ Article dans une revue hal-04270325v1
Editorial: Plant epigenetics and chromatin dynamics - EPIPLANT 2021-2022 Guillaume Moissiard,Marie Mirouze,Cristel Carles,Clémentine Vitte Frontiers in Plant Science, 2023, 14, ⟨10.3389/fpls.2023.1260391⟩ Article dans une revue hal-04305976v1
Extrachromosomal circular DNA and structural variants highlight genome instability in Arabidopsis epigenetic mutants P. Zhang,Assane Mbodj,A. Soundiramourtty,C. Llauro,Alain Ghesquièreet al. Nature Communications, 2023, 14, pp.5236. ⟨10.1038/s41467-023-41023-0⟩ Article dans une revue hal-04192599v1
Extrachromosomal circular DNA and structural variants highlight genome instability in Arabidopsis epigenetic mutants Panpan Zhang,Assane Mbodj,Abirami Soundiramourtty,Christel Llauro,Alain Ghesquièreet al. Nature Communications, 2023, 14 (1), pp.5236. ⟨10.1038/s41467-023-41023-0⟩ Article dans une revue hal-04766500v1
Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants Emilie Aubin,Christel Llauro,Joseph Garrigue,Marie Mirouze,Olivier Panaudet al. PLoS Genetics, 2023, 19 (10), pp.e1010964. ⟨10.1371/journal.pgen.1010964⟩ Article dans une revue hal-04274792v1
RNAi suppression of DNA methylation affects the drought stress response and genome integrity in transgenic poplar Mamadou D. Sow,Anne‐laure Le Gac,Régis Fichot,Sophie Lanciano,Alain Delaunayet al. New Phytologist, 2021, 232 (1), pp.80-97. ⟨10.1111/nph.17555⟩ Article dans une revue hal-03292338v1
ANCHOR: A Technical Approach to Monitor Single-Copy Locus Localization in Planta Anis Meschichi,Mathieu Ingouff,Claire Picart,Marie Mirouze,Sophie Dessetet al. Frontiers in Plant Science, 2021, 12, pp.677849. ⟨10.3389/fpls.2021.677849⟩ Article dans une revue hal-03313521v1
Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response Ariadna Picart-Picolo,Stefan Grob,Nathalie Picault,Michal Franek,Christel Llauroet al. Genome Research, In press, ⟨10.1101/gr.261586.120⟩ Article dans une revue hal-02962580v1
The genome sequence of segmental allotetraploid peanut Arachis hypogaea David Bertioli,Jerry Jenkins,Josh Clevenger,Olga Dudchenko,Dongying Gaoet al. Nature Genetics, 2019, 51 (5), pp.877-884. ⟨10.1038/s41588-019-0405-z⟩ Article dans une revue hal-02141867v1
Dicer-like and RNA-dependent RNA polymerase gene family identification and annotation in the cultivated Solanum tuberosum and its wild relative S. commersonii Salvatore Esposito,Riccardo Aversano,Vincenzo D’amelia,Clizia Villano,Daniela Aliotoet al. Planta, 2018, 248 (3), pp.729-743. ⟨10.1007/s00425-018-2937-3⟩ Article dans une revue hal-02098547v1
Dicer-2-Dependent Generation of Viral DNA from Defective Genomes of RNA Viruses Modulates Antiviral Immunity in Insects Enzo Poirier,Bertsy Goic,Lorena Tomé-Poderti,Lionel Frangeul,Jeremy Boussieret al. Cell Host and Microbe, 2018, 23 (3), pp.353-365.e8. ⟨10.1016/j.chom.2018.02.001⟩ Article dans une revue pasteur-01952531v1
The somatic piRNA pathway controls germline transposition over generations Bridlin Barckmann,Marianne El-Barouk,Alain Pélisson,Bruno Mugat,Blaise Maxime Liet al. Nucleic Acids Research, 2018, 46 (18), pp.9524 - 9536. ⟨10.1093/nar/gky761⟩ Article dans une revue hal-01904679v1
Transposable elements: all mobile, all different, some stress responsive, some adaptive? Sophie Lanciano,Marie Mirouze Current Opinion in Genetics and Development, 2018, 49, pp.106-114. ⟨10.1016/j.gde.2018.04.002⟩ Article dans une revue istex hal-02098540v1
Ecological plant epigenetics: Evidence from model and non-model species, and the way forward Christina Richards,Conchita Alonso,Claude Becker,Oliver Bossdorf,Etienne Bucheret al. Ecology Letters, 2017, 20 (12), pp.1576-1590. ⟨10.1111/ele.12858⟩ Article dans une revue hal-02098587v1
Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding Michael Thieme,Sophie Lanciano,Sandrine Balzergue,Nicolas Daccord,Marie Mirouzeet al. Genome Biology, 2017, 18 (1), pp.1-10. ⟨10.1186/s13059-017-1265-4⟩ Article dans une revue hal-02098596v1
Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology Emilie Debladis,Christel Llauro,Marie-Christine Carpentier,Marie Mirouze,Olivier Panaud BMC Genomics, 2017, 18, art. 537 [8 p.]. ⟨10.1186/s12864-017-3753-zg⟩ Article dans une revue ird-01626046v1
Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants Sophie Lanciano,Marie-Christine Carpentier,Christel Llauro,Edouard Jobet,Dagmara Robakowska-Hyzoreket al. PLoS Genetics, 2017, 13 (2), pp.e1006630. ⟨10.1371/journal.pgen.1006630⟩ Article dans une revue hal-02098598v1
DNA Methylation in Rice and Relevance for Breeding Sophie Lanciano,Marie Mirouze Epigenomes, 2017, 1 (2), pp.10. ⟨10.3390/epigenomes1020010⟩ Article dans une revue hal-02098591v1
Adaptation to Global Change: A Transposable Element–Epigenetics Perspective Olivier REY,Etienne Danchin,Marie Mirouze,Celine Loot,Simon Blanchet Trends in Ecology & Evolution, 2016, 31 (7), pp.514-526. ⟨10.1016/j.tree.2016.03.013⟩ Article dans une revue istex hal-02099870v1
Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes M. Mirouze,C. Vitte Journal of Experimental Botany, 2014, 65 (10), pp.2801-2812. ⟨10.1093/jxb/eru120⟩ Article dans une revue hal-03222994v1
Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes M. Mirouze,C. Vitte Journal of Experimental Botany, 2014, 65 (10), pp.2801-2812. ⟨10.1093/jxb/eru120⟩ Article dans une revue hal-04305941v1
Widespread and frequent horizontal transfers of transposable elements in plants. Moaine El Baidouri,Marie-Christine Carpentier,Richard Cooke,Dongying Gao,Eric Lasserreet al. Genome Research, 2014, 24 (5), pp.831-8. ⟨10.1101/gr.164400.113⟩ Article dans une revue hal-01218140v1
Epigenetic regulation of adaptive responses of forest tree species to the environment Katharina Braeutigam,Kelly J. Vining,Clément Lafon-Placette,Carl G. Fossdal,Marie Mirouzeet al. Ecology and Evolution, 2013, 3 (2), pp.399 - 415. ⟨10.1002/ece3.461⟩ Article dans une revue hal-02650711v1
Selective epigenetic control of retrotransposition in Arabidopsis Marie Mirouze,Jon Reinders,Etienne Bucher,Taisuke Nishimura,Korbinian Schneebergeret al. Nature, 2009, 461 (7262), pp.427 - 430. ⟨10.1038/nature08328⟩ Article dans une revue istex hal-01917183v1
Construction and characterisation of a BAC library from Arabidopsis halleri: evaluation of physical mapping based on conserved synteny with A. thaliana. Eric Lacombe,Magalie Cossegal,Marie Mirouze,Adam Thibaud,Fabrice Varoquauxet al. Plant Science, 2008, 174 (6), pp.634-640. ⟨10.1016/j.plantsci.2008.03.020⟩ Article dans une revue istex hal-00281372v1
A putative novel role for plant defensins: a defensin from the zinc hyperaccumulating plant, Arabidopsis halleri, confers zinc tolerance. M. Mirouze,J. Sels,Odile Richard,P. Czernic,S. Loubetet al. The Plant Journal, 2006, 47, pp.329-342. ⟨10.1111/j.1365-313X.2006.02788.x⟩ Article dans une revue hal-00087164v1

Pré-publication, Document de travail (2)

Characterization Of Interspecific Gene Flows at The Genome-wide Level in a Natural Ecosystem The Massane Forest Reveals New Insights Into Horizontal Transfer In plants Emilie Aubin,Christel Llauro,Joseph Garrigue,Marie Mirouze,Olivier Panaudet al. 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03852424v1
Hypomethylated poplars show higher tolerance to water deficit and highlight a dual role for DNA methylation in shoot meristem: regulation of stress response and genome integrity M.D. D Sow,A-L Le Gac,Régis Fichot,S. Lanciano,A. Delaunayet al. 2021 Pré-publication, Document de travail hal-03239719v1

Chapitre d'ouvrage (3)

Identification of extrachromosomal circular forms of active transposable elements using mobilome-seq S. Lanciano,Panpan Zhang,C. Llauro,Marie Mirouze Cho, Jungnam (ed.). Plant transposable elements : methods and protocols, 2250, Humana Press - Springer, pp.87-93, 2021, Methods in Molecular Biology, 978-1-0716-1133-3. ⟨10.1007/978-1-0716-1134-0_7⟩ Chapitre d'ouvrage hal-03674607v1
Preface Philippe Gallusci,Etienne Bucher,Marie Mirouze Plant Epigenetics Coming of Age for Breeding Applications, 88, Academic Press, Amsterdam(NLD), pp.XV-XVIII, 2018, Advances in Botanical Research, 9780128154038. ⟨10.1016/S0065-2296(18)30083-1⟩ Chapitre d'ouvrage hal-02539614v1
Aspects of Epigenetic Regulation in Cereals Omar Oltehua-Lopez,Ana Dorantes-Acosta,Mathieu Ingouff,Sophie Lanciano,Olivier Leblancet al. Plant Epigenetics Coming of Age for Breeding Applications, pp.361-386, 2018, ⟨10.1016/bs.abr.2018.10.004⟩ Chapitre d'ouvrage hal-02098511v1

Thèse (1)

Recherche de gènes impliqués dans la tolérance au zinc chez l'espèce modèle hyperaccumulatrice de zinc Arabidopsis halleri : un nouveau rôle possible pour les défensines de plantes Marie Mirouze Sciences du Vivant [q-bio]. Université Montpellier 2 (Sciences et Techniques), 2005. Français. ⟨NNT : ⟩ Thèse tel-02832953v1