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Mark Stoneking



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The genetic legacy of the expansion of Bantu-speaking peoples in Africa

Cesar A Fortes-Lima , Concetta Burgarella , Rickard Hammarén , Anders Eriksson , Mário Vicente
Nature, 2024, 625, pp.540-547. ⟨10.1038/s41586-023-06770-6⟩
Journal articles hal-04317801v1
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Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry

Sandra Oliveira , Anne-Maria Fehn , Beatriz Amorim , Mark Stoneking , Jorge Rocha
Science Advances , 2023, 9 (38), ⟨10.1126/sciadv.adh3822⟩
Journal articles hal-04367492v1
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South Asian maternal and paternal lineages in southern Thailand and the role of sex-biased admixture

Wipada Woravatin , Mark Stoneking , Metawee Srikummool , Jatupol Kampuansai , Leonardo Arias
PLoS ONE, 2023, 18 (9), pp.e0291547. ⟨10.1371/journal.pone.0291547⟩
Journal articles hal-04367499v1
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The genomic diversity of Taiwanese Austronesian groups: Implications for the “Into- and Out-of-Taiwan” models

Dang Liu , Albert Min-Shan Ko , Mark Stoneking
PNAS Nexus, 2023, 2 (5), ⟨10.1093/pnasnexus/pgad122⟩
Journal articles hal-04367486v1
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Genomic portrait and relatedness patterns of the Iron Age Log Coffin culture in northwestern Thailand

Selina Carlhoff , Wibhu Kutanan , Adam B Rohrlach , Cosimo Posth , Mark Stoneking
Nature Communications, 2023, 14 (1), pp.8527. ⟨10.1038/s41467-023-44328-2⟩
Journal articles hal-04367494v1
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Genomic perspectives on human dispersals during the Holocene

Mark Stoneking , Leonardo Arias , Dang Liu , Sandra Oliveira , Irina Pugach
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (4), ⟨10.1073/pnas.2209475119⟩
Journal articles hal-03952281v1
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Assessing Human Genome-wide Variation in the Massim Region of Papua New Guinea and Implications for the Kula Trading Tradition

Dang Liu , Benjamin M Peter , Wulf Schiefenhövel , Manfred Kayser , Mark Stoneking
Molecular Biology and Evolution, 2022, 39, ⟨10.1093/molbev/msac165⟩
Journal articles hal-03952082v1
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Ancient genomes from the last three millennia support multiple human dispersals into Wallacea

Sandra Oliveira , Kathrin Nägele , Selina Carlhoff , Irina Pugach , Toetik Koesbardiati
Nature Ecology & Evolution, 2022, 6, pp.1024 - 1034. ⟨10.1038/s41559-022-01775-2⟩
Journal articles hal-03745476v1
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The genomic prehistory of peoples speaking Khoisan languages

Brigitte Pakendorf , Mark Stoneking
Human Molecular Genetics, 2021, 30 (2), pp.R49-R55. ⟨10.1093/hmg/ddaa221⟩
Journal articles hal-03209205v1
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Genomic insights into population history and biological adaptation in Oceania

Jeremy Choin , Javier Mendoza-Revilla , Lara R Arauna , Sebastian Cuadros-Espinoza , Olivier Cassar
Nature, 2021, 592 (7855), pp.583-589. ⟨10.1038/s41586-021-03236-5⟩
Journal articles pasteur-03205291v1

Papuan mitochondrial genomes and the settlement of Sahul

Nicole Pedro , Nicolas Brucato , Verónica Fernandes , Mathilde André , Lauri Saag
Journal of Human Genetics, 2020, ⟨10.1038/s10038-020-0781-3⟩
Journal articles hal-02774590v1
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Extensive Ethnolinguistic Diversity in Vietnam Reflects Multiple Sources of Genetic Diversity

Dang Liu , Nguyen Thuy Duong , Nguyen Dang Ton , Nguyen van Phong , Brigitte Pakendorf
Molecular Biology and Evolution, 2020, 37 (9), pp.2503 - 2519. ⟨10.1093/molbev/msaa099⟩
Journal articles hal-03085670v1
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The paternal and maternal genetic history of Vietnamese populations

Enrico Macholdt , Leonardo Arias , Nguyen Thuy Duong , Nguyen Dang Ton , Nguyen Van Phong
European Journal of Human Genetics, 2020, 28 (5), pp.636-645. ⟨10.1038/s41431-019-0557-4⟩
Journal articles hal-02559765v1
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Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia

Nicolas Brucato , Verónica Fernandes , Pradiptajati Kusuma , Viktor Černý , Connie Mulligan
Genome Biology and Evolution, 2019, 11 (3), pp.748-758. ⟨10.1093/gbe/evz028⟩
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Multiple Deeply Divergent Denisovan Ancestries in Papuans

Guy Jacobs , Georgi Hudjashov , Lauri Saag , Pradiptajati Kusuma , Chelzie Darusallam
Journal articles hal-02112683v1

The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola

Sandra Oliveira , Alexander Hübner , Anne-Maria Fehn , Teresa Aço , Fernanda Lages
European Journal of Human Genetics, 2019, 27 (3), pp.475-483. ⟨10.1038/s41431-018-0304-2⟩
Journal articles hal-02050791v1
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Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia

Nguyen Thuy Duong , Enrico Macholdt , Nguyen Dang Ton , Leonardo Arias , Roland Schröder
Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-29989-0⟩
Journal articles hal-01960154v1
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Strong selection during the last millennium for African ancestry in the admixed population of Madagascar

Denis Pierron , Margit Heiske , Harilanto Razafindrazaka , Veronica Pereda-Loth , Jazmin Sanchez
Nature Communications, 2018, 9 (1), pp.932. ⟨10.1038/s41467-018-03342-5⟩
Journal articles hal-02112693v2
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Cultural Innovations Influence Patterns of Genetic Diversity in Northwestern Amazonia

Leonardo Arias , Roland Schröder , Alexander Hübner , Guillermo Barreto , Mark Stoneking
Molecular Biology and Evolution, 2018, 35 (11), pp.2719-2735. ⟨10.1093/molbev/msy169⟩
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Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa

Sandra Oliveira , Anne-Maria Fehn , Teresa Aço , Fernanda Lages , Magdalena Gayà-Vidal
American Journal of Physical Anthropology, 2018, 165 (3), pp.518-535
Journal articles hal-01960267v1

High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia

Leonardo Arias , Chiara Barbieri , Guillermo Barreto , Mark Stoneking , Brigitte Pakendorf
American Journal of Physical Anthropology, 2018, 165 (2), pp.238-255
Journal articles hal-01960279v1
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Genetic structure and sex-biased gene flow in the history of southern African populations

Vladimir Bajić , Chiara Barbieri , Alexander Hübner , Tom Tom Güldemann , Christfried Naumann
American Journal of Physical Anthropology, 2018, 167 (3), pp.656-671. ⟨10.1002/ajpa.23694⟩
Journal articles hal-01960263v1

The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor

Nicolas Brucato , Verónica Fernandes , Stéphane Mazières , Pradiptajati Kusuma , Murray Cox
American Journal of Human Genetics, 2018, 102 (1), pp.58-68. ⟨10.1016/j.ajhg.2017.11.011⟩
Journal articles hal-02112694v1
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Genomic landscape of human diversity across Madagascar

Denis Pierron , Margit Heiske , Harilanto Razafindrazaka , Ignace Rakoto , Nelly Rabetokotany
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (32), pp.E6498-E6506. ⟨10.1073/pnas.1704906114⟩
Journal articles hal-02112696v1
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Refining the Y chromosome phylogeny with southern African sequences

Chiara Barbieri , Alexander Hübner , Enrico Macholdt , Shengyu Ni , Sebastian Lippold
Human Genetics, 2016, 135 (5), pp.541 - 553. ⟨10.1007/s00439-016-1651-0⟩
Journal articles hal-01960474v1
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The Complex Admixture History and Recent Southern Origins of Siberian Populations

Irina Pugach , Rostislav Matveev , Viktor Spitsyn , Sergey Makarov , Innokentiy Novgorodov
Molecular Biology and Evolution, 2016, 33 (7), pp.1777-1795. ⟨10.1093/molbev/msw055⟩
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A genomic history of Aboriginal Australia

Anna-Sapfo Malaspinas , Michael Westaway , Craig Muller , Vitor Hugo Sousa , Oscar Lao
Nature, 2016, 538 (7624), pp.207-214. ⟨10.1038/nature18299⟩
Journal articles hal-02112765v1

New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa

Enrico Macholdt , Montgomery Slatkin , Brigitte Pakendorf , Mark Stoneking
American Journal of Physical Anthropology, 2014, 156 (4), pp.661-664
Journal articles halshs-01178744v1
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Migration and Interaction in a Contact Zone: mtDNA Variation among Bantu-Speakers in Southern Africa

Chiara Barbieri , Mário Vicente , Sandra Oliveira , Koen Bostoen , Jorge Rocha
PLoS ONE, 2014, 9 (6), pp.e99117. ⟨10.1371/journal.pone.0099117⟩
Journal articles halshs-01178666v1

Unraveling the complex maternal history of southern African Khoisan populations

Chiara Barbieri , Tom Güldemann , Linda Gerlach , Falko Berthold , Hirosi Nakagawa
American Journal of Physical Anthropology, 2014, 153 (3), pp.435-448
Journal articles halshs-01178706v1
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Ancient west Eurasian ancestry in southern and eastern Africa

Joseph Pickrell , Nick Patterson , Po-Ru Loh , Mark Lipson , Bonnie Berger
Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (7), pp.2632-2637. ⟨10.1073/pnas.1313787111⟩
Journal articles halshs-01179148v1
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Ancient Substructure in Early mtDNA Lineages of Southern Africa

Chiara Barbieri , Mário Vicente , Jorge Rocha , Sununguko w. Mpoloka , Mark Stoneking
American Journal of Human Genetics, 2013, 92 (2), pp.285-292. ⟨10.1016/j.ajhg.2012.12.010⟩
Journal articles hal-01998835v1
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The genetic prehistory of southern Africa

Joseph Pickrell , Nick Patterson , Chiara Barbieri , Falko Berthold , Linda Gerlach
Nature Communications, 2012, 3, pp.1143. ⟨10.1038/ncomms2140⟩
Journal articles hal-01998848v1
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Bringing together linguistic and genetic evidence to test the Bantu expansion

C. de Filippo , K. Bostoen , M. Stoneking , Brigitte Pakendorf
Proceedings of the Royal Society B: Biological Sciences, 2012, 279 (1741), pp.3256-3263. ⟨10.1098/rspb.2012.0318⟩
Journal articles hal-02006794v1
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Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands

F. Delfin , S. Myles , Y. Choi , D. Hughes , R. Illek
Molecular Biology and Evolution, 2012, 29 (2), pp.545-564. ⟨10.1093/molbev/msr186⟩
Journal articles hal-02006793v1
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Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra

Ellen Dröfn Gunnarsdóttir , Madhusudan Nandineni , Mingkun Li , Sean Myles , David Gil
Nature Communications, 2011, 2, pp.228. ⟨10.1038/ncomms1235⟩
Journal articles hal-02006798v1
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High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences.

Ivan Nasidze , Anna Schönberg , Christoph Theunert , Mingkun Li , Mark Stoneking
European Journal of Human Genetics, 2011, ⟨10.1038/ejhg.2011.62⟩
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Y-Chromosomal Variation in Sub-Saharan Africa: Insights Into the History of Niger-Congo Groups

C. de Filippo , C. Barbieri , M. Whitten , S. Mpoloka , E. Gunnarsdottir
Molecular Biology and Evolution, 2011, 28 (3), pp.1255-1269. ⟨10.1093/molbev/msq312⟩
Journal articles hal-02006802v1

Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia

Cesare de Filippo , Patricia Heyn , Lawrence Barham , Mark Stoneking , Brigitte Pakendorf
American Journal of Physical Anthropology, 2010, 141 (3), pp.382-394
Journal articles hal-02006808v1
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Genetic Admixture History of Eastern Indonesia as Revealed by Y-Chromosome and Mitochondrial DNA Analysis

S. Mona , K. Grunz , S. Brauer , Brigitte Pakendorf , L. Castri
Molecular Biology and Evolution, 2009, 26 (8), pp.1865-1877. ⟨10.1093/molbev/msp097⟩
Journal articles hal-02006809v1

Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis.

Patricia Balaresque , Georgina Bowden , Emma Parkin , Ghada Omran , Evelyne Heyer
Human Mutation, 2008, 29 (10), pp.1171-80. ⟨10.1002/humu.20757⟩
Journal articles hal-00393071v1

In search of polymorphic Alu insertions with restricted geographic distributions

R. Cordaux , D. Srikanta , J. R. Lee , M. Stoneking , M.A. Batzer
Genomics, 2007, 90, pp.154-158. ⟨10.1016/j.ygeno.2007.03.010⟩
Journal articles hal-00154542v1

Mating patterns amongst Siberian reindeer herders: Inferences from mtDNA and Y-chromosomal analyses

Brigitte Pakendorf , Innokentij Novgorodov , Vladimir Osakovskij , Mark Stoneking
American Journal of Physical Anthropology, 2007, 133 (3), pp.1013-1027
Journal articles hal-02006817v1

Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts

Brigitte Pakendorf , Innokentij Novgorodov , Vladimir Osakovskij , Al’bina Danilova , Artur Protod’jakonov
Human Genetics, 2006, 120 (3), pp.334-353
Journal articles hal-02006826v1
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Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific

M. Kayser , S. Brauer , R. Cordaux , A. Casto , O. Lao
Molecular Biology and Evolution, 2006, 23, pp.2234-2244
Journal articles hal-00117338v1

Mitochondrial DNA and Human Evolution

Brigitte Pakendorf , Mark Stoneking
Annual Review of Genomics and Human Genetics, 2005, 6 (1), pp.165-183
Journal articles hal-02012633v1
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Recent Origin and Cultural Reversion of a Hunter–Gatherer Group

Hiroki Oota , Brigitte Pakendorf , Günter Weiss , Arndt von Haeseler , Surin Pookajorn
PLoS Biology, 2005, 3 (3), pp.e71. ⟨10.1371/journal.pbio.0030071⟩
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Mitochondrial DNA evidence for admixed origins of central Siberian populations

Brigitte Pakendorf , Victor Wiebe , Larissa Tarskaia , Victor Spitsyn , Himla Soodyall
American Journal of Physical Anthropology, 2003, 120 (3), pp.211-224
Journal articles hal-02008721v1

Y-chromosomal evidence for a strong reduction in male population size of Yakuts

Brigitte Pakendorf , Bharti Morar , Larissa A Tarskaia , Manfred Kayser , Himla Soodyall
Human Genetics, 2002, 110 (2), pp.198-200. ⟨10.1007/s00439-001-0664-4⟩
Journal articles hal-02012591v1