MARTINE DA ROCHA Ingénieure Bioinformatique

Publications

Article dans une revue (26)

Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats Ana Paula Zotta Mota,Georgios Koutsovoulos,Laetitia Perfus-Barbeoch,Evelin Despot-Slade,Karine Labadieet al. Nature Communications, 2024, 15 (1), pp.773. ⟨10.1038/s41467-024-44914-y⟩ Article dans une revue hal-04489824v1
Invasion of the stigma by oomycete pathogenic hyphae or pollen tubes: striking similarities and differences Lucie Riglet,Sophie Hok,Naïma Kebdani-Minet,Joëlle Le Berre,Mathieu Gourgueset al. Journal of Experimental Botany, 2024, 75 (20), pp.6258-6274. ⟨10.1093/jxb/erae308⟩ Article dans une revue (article de synthèse) hal-04779975v1
AUXIN RESPONSIVE FACTOR8 regulates development of the feeding site induced by root-knot nematodes in tomato Yara Noureddine,Martine da Rocha,Jing An,Clémence Médina,Joffrey Mejiaset al. Journal of Experimental Botany, 2023, 74 (18), pp.5752-5766. ⟨10.1093/jxb/erad208⟩ Article dans une revue hal-04617469v1
Root-associated microbiota drive phytoremediation strategies to lead of Sonchus Asper (L.) Hill as revealed by intercropping-induced modifications of the rhizosphere microbiome Xinyue Mei,Ying Wang,Zuran Li,Marie Larousse,Arthur Péréet al. Environmental Science and Pollution Research, 2022, 29 (16), pp.23026-23040. ⟨10.1007/s11356-021-17353-1⟩ Article dans une revue hal-04617452v1
Copper microRNAs modulate the formation of giant feeding cells induced by the root knot nematode Meloidogyne incognita in Arabidopsis thaliana Yara Noureddine,Joffrey Mejias,Martine da Rocha,Sébastien Thomine,Michaël Quentinet al. New Phytologist, 2022, 236 (1), pp.283-295. ⟨10.1111/nph.18362⟩ Article dans une revue hal-03866626v1
Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes Martine da Rocha,Caroline Bournaud,Julie Dazenière,Peter Thorpe,Marc Bailly-Bechetet al. Genes, 2021, 12 (5), pp.771. ⟨10.3390/genes12050771⟩ Article dans une revue hal-04617459v1
Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest Djampa Kozlowski,Rahim Hassanaly-Goulamhoussen,Martine da Rocha,Georgios Koutsovoulos,Marc Bailly-Bechetet al. Evolutionary Applications, 2021, 14 (7), pp.1844-1866. ⟨10.1111/eva.13246⟩ Article dans une revue hal-04617465v1
Chromatin landscape dynamics in the early development of the plant parasitic nematode Meloidogyne incognita Rahim Hassanaly-Goulamhoussen,Ronaldo de Carvalho Augusto,Nathalie Marteu-Garello,Arthur Péré,Bruno Faveryet al. Frontiers in Cell and Developmental Biology, 2021, 9, pp.765690. ⟨10.3389/fcell.2021.765690⟩ Article dans une revue hal-03467409v2
The molecular signatures of compatible and incompatible pollination in Arabidopsis Chie Kodera,Jérémy Just,Martine Da Rocha,Antoine Larrieu,Lucie Rigletet al. BMC Genomics, 2021, 22 (1), ⟨10.1186/s12864-021-07503-7⟩ Article dans une revue hal-03299108v1
Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root- knot nematode Georgios Koutsovoulos,Marine Poullet,Abdelnaser Elashry,Erika Sallet,Martine da Rochaet al. Scientific Data , 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩ Article dans une revue (data paper) hal-02972492v1
Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica Franck Panabières,Corinne Rancurel,Martine da Rocha,Marie-Line Kuhn Frontiers in Genetics, 2020, 11, ⟨10.3389/fgene.2020.00557⟩ Article dans une revue hal-04080520v1
Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode &lt;em&gt;Meloidogyne incognita&lt;/em&gt; Philippe Castagnone-Sereno,Karine Mulet,Etienne Danchin,Georgios D. Koutsovoulos,Mégane Karaulicet al. Molecular Ecology, 2019, 28 (10), pp.2559-2572. ⟨10.1111/mec.15095⟩ Article dans une revue hal-02629335v1
Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes &lt;em&gt;Meloidogyne&lt;/em&gt; spp., with a focus on the asexually reproducing species Loris Pratx,Corinne Rancurel,Martine da Rocha,Etienne Danchin,Philippe Castagnone-Serenoet al. BMC Genomics, 2018, 19, pp.1-21. ⟨10.1186/s12864-018-4686-x⟩ Article dans une revue hal-02626482v1
A root-knot nematode small glycine and cysteine-rich secreted effector, MiSGCR1, is involved in plant parasitism Chinh-Nghia Nguyen,Laetitia Perfus-Barbeoch,Michaël Quentin,Jianlong Zhao,Marc Maglianoet al. New Phytologist, 2018, 217 (2), pp.687-699. ⟨10.1111/nph.14837⟩ Article dans une revue hal-02621877v1
Characterization of siRNAs clusters in &lt;em&gt;Arabidopsis thaliana&lt;/em&gt; galls induced by the root-knot nematode &lt;em&gt;Meloidogyne incognita&lt;/em&gt; Clémence Medina,Martine da Rocha,Marc Magliano,Alizée Raptopoulo,Nathalie Marteuet al. BMC Genomics, 2018, 19, ⟨10.1186/s12864-018-5296-3⟩ Article dans une revue hal-02628557v1
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes Romain Blanc-Mathieu,Laetitia Zurletto,Jean-Marc Aury,Martine da Rocha,Jerome Gouzyet al. PLoS Genetics, 2017, 13 (6), pp.e1006777. ⟨10.1371/journal.pgen.1006777⟩ Article dans une revue hal-01602779v1
The transcriptomes of &lt;em&gt;Xiphinema index&lt;/em&gt; and &lt;em&gt;Longidorus elongatus&lt;/em&gt; Suggest Independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes Etienne G J. Danchin,Laetitia Perfus-Barbeoch,Corinne Rancurel,Peter Thorpe,Martine da Rochaet al. Genes, 2017, 8 (10), ⟨10.3390/genes8100287⟩ Article dans une revue hal-02624204v1
Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita Clémence Medina,Martine da Rocha,Marc Magliano,Alizée Ratpopoulo,Benoît Revelet al. New Phytologist, 2017, 216 (3), pp.882-896. ⟨10.1111/nph.14717⟩ Article dans une revue hal-03148728v1
Transcriptome Profiling of Neurosensory Perception Genes in Wing Tissue of Two Evolutionary Distant Insect Orders: Diptera (&lt;em&gt;Drosophila melanogaster&lt;/em&gt;)&lt;em&gt;&lt;/em&gt;) and Hemiptera (&lt;em&gt;Acyrthosiphon pisum&lt;/em&gt;) Sandra Agnel,Martine da Rocha,Alain Robichon Journal of Molecular Evolution, 2017, 85 (5-6), pp.234 - 245. ⟨10.1007/s00239-017-9814-8⟩ Article dans une revue hal-02620001v1
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence Sebastian Eves-van Den Akker,Dominik R. Laetsch,Peter Thorpe,Catherine J. Lilley,Etienne G. J. Danchinet al. Genome Biology, 2016, 17 (1), pp.1-23. ⟨10.1186/s13059-016-0985-1⟩ Article dans une revue hal-01439090v1
Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks. Isabelle Damiani,Alice Drain,Marjorie Guichard,Sandrine Balzergue,Alexandre Boscariet al. Frontiers in Plant Science, 2016, 7, pp.794. ⟨10.3389/fpls.2016.00794⟩ Article dans une revue hal-01354648v1
Root-knot nematodes pan-genomics reveals novel target genes for safer and more specific control Etienne Danchin,Marie Jeanne Arguel,Amandine Fournier,Laetitia Perfus-Barbeoch,Marc Maglianoet al. Journal of Nematology, 2014, 46 (2), pp.150 Article dans une revue hal-01269022v1
Environmentally selected aphid variants in clonality context display differential patterns of methylation in the genome Claude Pasquier,Mathilde Clément,Aviv Dombrovsky,Stéphanie Penaud,Martine da Rochaet al. PLoS ONE, 2014, 9 (12), pp.e115022. ⟨10.1371/journal.pone.0115022⟩ Article dans une revue hal-01151509v1
Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining Etienne Danchin,Marie Jeanne Arguel,Amandine Fournier,Laetitia Zurletto,Marc Maglianoet al. PLoS Pathogens, 2013, 9 (10), pp.1-15. ⟨10.1371/journal.ppat.1003745⟩ Article dans une revue hal-01137164v1
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga Jean-François Flot,Boris Hespeels,Xiang Li,Benjamin Noel,Irina Arkhipovaet al. Nature, 2013, 500 (7463), pp.453-457. ⟨10.1038/nature12326⟩ Article dans une revue hal-01282538v1
Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes. Julien Paganini,Amandine Campan-Fournier,Martine da Rocha,Philippe Gouret,Pierre Pontarottiet al. PLoS ONE, 2012, 7 (11), pp.e50875. ⟨10.1371/journal.pone.0050875⟩ Article dans une revue hal-00831026v1

Communication dans un congrès (1)

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals in-sights into the bases of parasitism and virulence S. Eves-van den Akker,D. R. Laetsch,P. Thorpe,C. J. Lilley,Etienne Danchinet al. Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montréal, Canada. 387 p Communication dans un congrès hal-01604220v1

Poster de conférence (5)

Evolution of the genetic load in invasive insects: insights from a genomic cross-species study Eric Lombaert,Andréa Beaumé,Aurélie Blin,Martine Da Rocha,Mathieu Gautieret al. Congress of the European Society for Evolutionary Biology (ESEB 2025), Aug 2025, Barcelona, Spain. , pp.P01.053 Poster de conférence hal-05226015v1
Comparison of the PacBio 2.0 and 3.0 kits for full length mRNA sequencing in multiplex Marine Sallaberry,Eden Darnige,Lucien Hoffbeck,Sandra Fourre,Mathis Pochonet al. Assemblée Générale France Génomique, Jun 2023, Paris, France Poster de conférence hal-04150252v1
Insect invaders analysis pipeline: what happens to the genetic load when alien species become invasive? Barbara Porro,Mathieu Zallio,Emeline Deulery,Aurélie Blin,Mathieu Gautieret al. Les Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2023, Nice, France Poster de conférence hal-05261289v1
Isolation of candidates effectors secreted by the fungal pathogen Fusarium graminearum in the early stages of FHB disease on wheat. Philippe Lecomte,Christelle El Hajj Assaf,Martine da Rocha,Cherif Chetouhi,Olivier Soudièreet al. Effectome Network, Sep 2013, Lauret, France. 2013 Poster de conférence hal-02750292v1
Identification of effectors secreted by the fungal pathogen Fusarium graminearum, main causal agent of FHB on wheat Philippe Lecomte,Christelle El Hajj Assaf,Martine da Rocha,Cherif Chetouhi,Etienne Danchinet al. Plant Resistance Sustainability 2012 International Conference, Oct 2012, la colle sur loup, France. , 2012, International Conference on Plant Resistance Sustainability 2012 Poster de conférence hal-02749942v1

Pré-publication, Document de travail (4)

Transcriptional responses of Solanum lycopersicum to three distinct parasites reveal host hubs and networks underlying parasitic successes Julia Truch,Maëlle Jaouannet,Martine da Rocha,Emmanuelle Kulhanek-Fontanille,Cyril van Ghelderet al. 2026 Pré-publication, Document de travail hal-05513641v1
Plant-parasitic nematode microRNAs hijack plant AGO1 to induce host-cell reprogramming Ange Dussutour,Yara Noureddine,Martine da Rocha,Oussama Yahmi,Abile T. Mohammedet al. 2026 Pré-publication, Document de travail hal-05513624v1
Invasion of the stigma by the pollen tube or an oomycete pathogen: striking similarities and differences Lucie Riglet,Sophie Hok,Naïma Kebdani-Minet,Joëlle Le Berre,Mathieu Gourgueset al. 2023 Pré-publication, Document de travail hal-04229747v1
The polyploid genome of the mitotic parthenogenetic root-knot nematode &lt;em&gt;Meloidogyne enterolobii&lt;/em&gt; Georgios Koutsovoulos,Marine Poullet,Abdelnaser El Ashry,Djampa Kozlowski,Erika Salletet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02788762v1